Wall clock time and date at job start Wed Apr 1 2020 03:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00501 * 2 1 4 4 H 1.48503 * 109.47037 * 239.99916 * 3 2 1 5 5 H 1.48497 * 109.46901 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47656 * 119.99556 * 3 2 1 7 7 C 1.38814 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00126 * 191.96800 * 7 2 1 9 9 N 1.36937 * 119.99880 * 11.97723 * 7 2 1 10 10 C 1.47146 * 120.98369 * 30.06582 * 9 7 2 11 11 C 1.53299 * 108.38302 * 129.49343 * 10 9 7 12 12 O 1.42952 * 109.22453 * 52.30294 * 11 10 9 13 13 C 1.42966 * 114.16803 * 297.41832 * 12 11 10 14 14 C 1.47151 * 120.97887 * 210.09600 * 9 7 2 15 15 H 1.09005 * 109.68190 * 110.75101 * 14 9 7 16 16 C 1.52998 * 109.68498 * 350.23066 * 14 9 7 17 17 N 1.46507 * 109.46961 * 61.01226 * 16 14 9 18 18 C 1.34778 * 119.99946 * 179.97438 * 17 16 14 19 19 O 1.21285 * 119.99794 * 0.02562 * 18 17 16 20 20 C 1.50695 * 119.99667 * 180.27408 * 18 17 16 21 21 C 1.50706 * 109.46728 * 179.73012 * 20 18 17 22 22 C 1.30997 * 119.99873 * 126.92659 * 21 20 18 23 23 C 1.50699 * 120.00301 * 8.40311 * 22 21 20 24 24 C 1.50698 * 109.47124 * 125.91907 * 23 22 21 25 25 C 1.38231 * 120.00556 * 269.72727 * 24 23 22 26 26 C 1.38234 * 120.00398 * 179.78845 * 25 24 23 27 27 C 1.38235 * 119.99760 * 0.44384 * 26 25 24 28 28 C 1.38235 * 120.00055 * 359.81062 * 27 26 25 29 29 C 1.38231 * 119.99891 * 359.97438 * 28 27 26 30 30 H 0.97008 * 119.99566 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.68585 * 249.21316 * 10 9 7 32 32 H 1.09003 * 109.68390 * 9.76982 * 10 9 7 33 33 H 1.09001 * 109.50930 * 172.22735 * 11 10 9 34 34 H 1.09001 * 109.50836 * 292.37575 * 11 10 9 35 35 H 1.08998 * 109.51199 * 302.66041 * 13 12 11 36 36 H 1.09000 * 109.51668 * 182.50288 * 13 12 11 37 37 H 1.09003 * 109.47281 * 301.01701 * 16 14 9 38 38 H 1.09000 * 109.47420 * 181.01327 * 16 14 9 39 39 H 0.96999 * 119.99917 * 0.02562 * 17 16 14 40 40 H 1.08991 * 109.47725 * 299.72760 * 20 18 17 41 41 H 1.08996 * 109.47022 * 59.73540 * 20 18 17 42 42 H 1.08000 * 120.00090 * 306.92277 * 21 20 18 43 43 H 1.08001 * 119.99566 * 188.40109 * 22 21 20 44 44 H 1.08997 * 109.47350 * 245.92326 * 23 22 21 45 45 H 1.09007 * 109.46677 * 5.92517 * 23 22 21 46 46 H 1.08002 * 119.99884 * 0.02562 * 25 24 23 47 47 H 1.07999 * 120.00272 * 180.27436 * 26 25 24 48 48 H 1.07999 * 119.99962 * 179.83085 * 27 26 25 49 49 H 1.07998 * 120.00060 * 180.02562 * 28 27 26 50 50 H 1.08005 * 120.00299 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0725 -1.2123 0.1945 9 7 1.3478 -2.3753 -0.2450 10 6 0.1598 -2.4071 -1.1127 11 6 0.3523 -3.5139 -2.1557 12 8 0.6855 -4.7346 -1.4906 13 6 1.9152 -4.6879 -0.7629 14 6 1.8027 -3.6412 0.3515 15 1 1.0820 -3.9751 1.0981 16 6 3.1694 -3.4394 1.0088 17 7 3.0569 -2.4374 2.0718 18 6 4.1427 -2.0959 2.7935 19 8 5.2130 -2.6176 2.5627 20 6 4.0256 -1.0698 3.8909 21 6 5.3707 -0.8754 4.5423 22 6 5.8767 0.3278 4.6536 23 6 5.0403 1.5322 4.3060 24 6 5.0289 2.4887 5.4705 25 6 4.0504 2.3843 6.4413 26 6 4.0425 3.2590 7.5116 27 6 5.0078 4.2440 7.6064 28 6 5.9832 4.3518 6.6329 29 6 5.9937 3.4743 5.5649 30 1 -0.4850 0.8402 -0.0004 31 1 -0.7266 -2.6170 -0.5141 32 1 0.0455 -1.4460 -1.6141 33 1 -0.5707 -3.6469 -2.7200 34 1 1.1587 -3.2375 -2.8351 35 1 2.7272 -4.4158 -1.4372 36 1 2.1166 -5.6656 -0.3250 37 1 3.8852 -3.0972 0.2613 38 1 3.5112 -4.3832 1.4338 39 1 2.2009 -2.0205 2.2566 40 1 3.6861 -0.1238 3.4693 41 1 3.3079 -1.4143 4.6353 42 1 5.9173 -1.7279 4.9175 43 1 6.8935 0.4565 4.9944 44 1 5.4630 2.0283 3.4324 45 1 4.0208 1.2153 4.0862 46 1 3.2942 1.6169 6.3655 47 1 3.2806 3.1746 8.2724 48 1 5.0000 4.9291 8.4413 49 1 6.7376 5.1210 6.7072 50 1 6.7560 3.5582 4.8044 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272870022.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:04 Heat of formation + Delta-G solvation = -27.588284 kcal Electronic energy + Delta-G solvation = -30142.444934 eV Core-core repulsion = 26135.139225 eV Total energy + Delta-G solvation = -4007.305708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.90387 -40.22283 -39.85107 -37.15565 -36.66702 -35.26326 -33.36460 -32.89391 -32.12301 -31.75679 -29.69574 -28.91491 -27.28014 -26.25074 -25.22023 -23.46419 -23.35215 -22.38815 -21.55650 -21.30743 -19.43509 -18.74559 -17.98619 -17.60613 -17.54701 -17.18873 -16.76347 -16.36208 -16.21433 -16.07220 -16.02470 -15.65105 -15.43194 -15.24104 -14.88602 -14.81379 -14.51655 -14.29224 -14.17409 -13.92134 -13.57668 -13.50486 -13.20948 -12.98542 -12.85681 -12.75211 -12.69406 -12.46230 -12.15324 -12.00260 -11.98428 -11.91906 -11.83156 -11.68501 -11.30470 -10.93831 -10.61899 -10.54335 -9.94521 -9.81508 -9.80280 -9.58213 -8.62208 -7.85505 -5.35257 0.43676 0.51010 1.22842 1.42173 1.48249 1.51309 1.77725 2.43084 2.52574 2.89475 3.04003 3.30718 3.45549 3.77046 3.92159 3.94755 4.02943 4.05377 4.16599 4.21093 4.26356 4.29898 4.31879 4.39520 4.46898 4.47825 4.60029 4.62094 4.64873 4.66830 4.68361 4.76884 4.79023 4.84266 5.00906 5.05970 5.12181 5.13436 5.18623 5.31401 5.58025 5.59304 5.63115 5.65314 5.66886 5.70693 5.71446 5.87102 6.14412 6.29734 6.37805 6.74767 7.11925 7.38481 7.78226 8.34080 9.18775 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014146 B = 0.002803 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.894892 B = 9985.444446 C =11233.660988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.030 4.030 3 Si 0.939 3.061 4 H -0.292 1.292 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.604 5.604 10 C 0.148 3.852 11 C 0.046 3.954 12 O -0.398 6.398 13 C 0.057 3.943 14 C 0.126 3.874 15 H 0.038 0.962 16 C 0.142 3.858 17 N -0.698 5.698 18 C 0.511 3.489 19 O -0.592 6.592 20 C -0.118 4.118 21 C -0.135 4.135 22 C -0.147 4.147 23 C -0.067 4.067 24 C -0.085 4.085 25 C -0.131 4.131 26 C -0.126 4.126 27 C -0.133 4.133 28 C -0.125 4.125 29 C -0.132 4.132 30 H 0.249 0.751 31 H 0.007 0.993 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.042 0.958 35 H 0.048 0.952 36 H 0.117 0.883 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.412 0.588 40 H 0.103 0.897 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.125 0.875 47 H 0.139 0.861 48 H 0.143 0.857 49 H 0.142 0.858 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.211 2.589 11.577 13.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.226 4.226 3 Si 0.768 3.232 4 H -0.219 1.219 5 H -0.224 1.224 6 H -0.191 1.191 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.330 5.330 10 C 0.023 3.977 11 C -0.032 4.032 12 O -0.317 6.317 13 C -0.022 4.022 14 C 0.020 3.980 15 H 0.056 0.944 16 C 0.018 3.982 17 N -0.349 5.349 18 C 0.299 3.701 19 O -0.474 6.474 20 C -0.157 4.157 21 C -0.153 4.153 22 C -0.165 4.165 23 C -0.104 4.104 24 C -0.085 4.085 25 C -0.149 4.149 26 C -0.144 4.144 27 C -0.150 4.150 28 C -0.143 4.143 29 C -0.150 4.150 30 H 0.059 0.941 31 H 0.025 0.975 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.135 0.865 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.249 0.751 40 H 0.121 0.879 41 H 0.139 0.861 42 H 0.133 0.867 43 H 0.141 0.859 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.143 0.857 47 H 0.157 0.843 48 H 0.161 0.839 49 H 0.159 0.841 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.716 2.191 11.402 13.940 hybrid contribution -0.113 1.487 -0.303 1.521 sum 7.603 3.677 11.098 13.947 Atomic orbital electron populations 1.70096 1.06124 1.25621 1.55301 1.25545 0.95669 1.00124 1.01298 0.85785 0.77922 0.80981 0.78504 1.21883 1.22379 1.19096 1.19268 0.91391 0.84129 1.42492 0.91261 1.44287 1.32000 1.03145 1.53606 1.21250 0.88176 0.97150 0.91148 1.23216 1.00430 0.85063 0.94465 1.87802 1.41236 1.34940 1.67674 1.22997 0.86087 0.99882 0.93203 1.21548 0.93920 0.88173 0.94363 0.94423 1.21083 0.96279 0.91555 0.89314 1.46063 1.12452 1.42064 1.34281 1.20881 0.83312 0.82822 0.83110 1.90614 1.28860 1.56805 1.71102 1.20885 0.98986 0.99131 0.96718 1.22354 0.95961 0.97716 0.99287 1.22666 0.99368 0.92975 1.01444 1.19888 1.00686 0.93957 0.95865 1.19855 0.96014 0.96333 0.96256 1.21279 0.98821 1.00071 0.94753 1.21440 0.99449 0.95342 0.98153 1.21480 0.95029 0.98823 0.99710 1.21442 0.99350 0.99299 0.94186 1.21294 0.98819 0.95561 0.99323 0.94122 0.97474 0.91537 0.87800 0.93945 0.93387 0.86467 0.93452 0.90346 0.75103 0.87928 0.86061 0.86655 0.85906 0.90663 0.90225 0.85713 0.84287 0.83913 0.84053 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.66 11.12 21.65 0.24 -49.41 16 2 C -0.03 -1.50 5.04 84.86 0.43 -1.07 16 3 Si 0.94 41.88 29.57 68.60 2.03 43.91 16 4 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 5 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 7 C -0.24 -11.74 7.13 84.03 0.60 -11.15 16 8 H 0.07 3.41 5.76 -2.91 -0.02 3.39 16 9 N -0.60 -27.17 3.04 -673.72 -2.04 -29.21 16 10 C 0.15 6.68 5.39 86.36 0.47 7.14 16 11 C 0.05 1.70 6.98 72.08 0.50 2.20 16 12 O -0.40 -14.51 10.74 -148.98 -1.60 -16.11 16 13 C 0.06 1.86 6.29 72.08 0.45 2.31 16 14 C 0.13 4.70 3.20 44.97 0.14 4.85 16 15 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 16 C 0.14 5.03 4.44 86.38 0.38 5.41 16 17 N -0.70 -24.99 3.77 -463.04 -1.74 -26.73 16 18 C 0.51 18.01 7.82 87.66 0.69 18.70 16 19 O -0.59 -24.27 16.03 -3.04 -0.05 -24.32 16 20 C -0.12 -3.33 5.79 29.10 0.17 -3.16 16 21 C -0.13 -3.61 8.75 25.65 0.22 -3.39 16 22 C -0.15 -3.64 9.49 25.65 0.24 -3.40 16 23 C -0.07 -1.70 5.45 29.10 0.16 -1.54 16 24 C -0.08 -1.99 5.12 -19.87 -0.10 -2.10 16 25 C -0.13 -2.92 9.70 22.27 0.22 -2.70 16 26 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 27 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 28 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 29 C -0.13 -2.78 9.70 22.27 0.22 -2.57 16 30 H 0.25 13.27 8.31 -92.70 -0.77 12.50 16 31 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.07 3.35 6.28 -2.39 -0.01 3.33 16 33 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 34 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.05 1.86 7.55 -2.39 -0.02 1.85 16 38 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.41 15.37 7.35 -92.71 -0.68 14.69 16 40 H 0.10 3.00 5.31 -2.39 -0.01 2.99 16 41 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 42 H 0.12 3.08 8.05 -2.91 -0.02 3.06 16 43 H 0.12 2.74 8.06 -2.91 -0.02 2.71 16 44 H 0.07 1.94 8.09 -2.39 -0.02 1.92 16 45 H 0.08 2.12 5.23 -2.38 -0.01 2.11 16 46 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 47 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 48 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 49 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 50 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -61.79 401.43 2.54 -59.24 By element: Atomic # 1 Polarization: 39.06 SS G_CDS: 0.25 Total: 39.31 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 5.46 Total: 3.32 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -3.55 Total: -105.36 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -1.65 Total: -40.43 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -61.79 2.54 -59.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272870022.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.655 kcal (2) G-P(sol) polarization free energy of solvation -61.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds