Wall clock time and date at job start Wed Apr 1 2020 02:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00157 * 2 1 4 4 H 1.48503 * 109.46895 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47419 * 299.99722 * 3 2 1 6 6 H 1.48502 * 109.46876 * 60.00232 * 3 2 1 7 7 C 1.38818 * 119.99694 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99367 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99993 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99739 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46979 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.55286 * 60.12387 * 11 10 9 13 13 C 1.53293 * 109.51350 * 180.24946 * 11 10 9 14 14 N 1.47149 * 108.38615 * 172.22567 * 13 11 10 15 15 C 1.34777 * 120.98438 * 129.44706 * 14 13 11 16 16 O 1.21284 * 119.99523 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00313 * 180.02562 * 15 14 13 18 18 C 1.50702 * 109.46944 * 179.97438 * 17 15 14 19 19 C 1.38261 * 120.00054 * 269.72363 * 18 17 15 20 20 C 1.38203 * 119.99989 * 179.81032 * 19 18 17 21 21 C 1.38260 * 120.00177 * 0.40147 * 20 19 18 22 22 C 1.38212 * 119.99503 * 359.85610 * 21 20 19 23 23 C 1.50702 * 119.99755 * 179.97438 * 22 21 20 24 24 C 1.53002 * 117.50049 * 8.72170 * 23 22 21 25 25 C 1.53002 * 117.49827 * 300.06363 * 23 22 21 26 26 C 1.38208 * 119.99888 * 90.00264 * 18 17 15 27 27 C 1.47158 * 118.03557 * 309.47002 * 14 13 11 28 28 C 1.53292 * 108.38531 * 50.53262 * 27 14 13 29 29 O 1.42956 * 109.22263 * 307.69756 * 28 27 14 30 30 H 0.96997 * 119.99793 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00286 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47155 * 59.99600 * 10 9 7 33 33 H 1.09001 * 109.47058 * 299.99481 * 10 9 7 34 34 H 1.08999 * 109.68479 * 291.95478 * 13 11 10 35 35 H 1.09001 * 109.68027 * 52.50577 * 13 11 10 36 36 H 1.08993 * 109.46926 * 300.00028 * 17 15 14 37 37 H 1.09002 * 109.46756 * 60.00048 * 17 15 14 38 38 H 1.08004 * 119.99504 * 0.02562 * 19 18 17 39 39 H 1.08004 * 120.00408 * 180.23362 * 20 19 18 40 40 H 1.07995 * 120.00291 * 179.83217 * 21 20 19 41 41 H 1.09005 * 115.55134 * 154.39569 * 23 22 21 42 42 H 1.08999 * 117.49416 * 0.02562 * 24 23 22 43 43 H 1.08995 * 117.50049 * 145.01954 * 24 23 22 44 44 H 1.08998 * 117.49974 * 214.98145 * 25 23 22 45 45 H 1.09000 * 117.49975 * 359.97438 * 25 23 22 46 46 H 1.07998 * 120.00287 * 359.97438 * 26 18 17 47 47 H 1.09002 * 109.68029 * 290.80733 * 27 14 13 48 48 H 1.09003 * 109.70935 * 170.27629 * 27 14 13 49 49 H 1.09000 * 109.51123 * 187.77017 * 28 27 14 50 50 H 1.09005 * 109.55129 * 67.64730 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0021 12 1 0.4381 -4.7651 -0.8888 13 6 1.8291 -6.1478 0.0095 14 7 0.8615 -7.2402 0.1987 15 6 0.8507 -8.3077 -0.6239 16 8 1.6468 -8.3783 -1.5362 17 6 -0.1505 -9.4136 -0.4103 18 6 0.0473 -10.4794 -1.4572 19 6 -0.6411 -10.4089 -2.6541 20 6 -0.4568 -11.3842 -3.6158 21 6 0.4097 -12.4349 -3.3776 22 6 1.0938 -12.5082 -2.1789 23 6 2.0379 -13.6538 -1.9190 24 6 2.3534 -14.5885 -3.0884 25 6 1.4560 -15.0686 -1.9451 26 6 0.9124 -11.5305 -1.2184 27 6 -0.0944 -7.1323 1.3123 28 6 -0.7662 -5.7562 1.2413 29 8 0.2408 -4.7441 1.1687 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6840 -3.7142 0.8921 33 1 2.6853 -3.7150 -0.8879 34 1 2.3484 -6.2777 -0.9400 35 1 2.5507 -6.1511 0.8265 36 1 -0.0085 -9.8458 0.5802 37 1 -1.1600 -9.0100 -0.4893 38 1 -1.3203 -9.5897 -2.8390 39 1 -0.9916 -11.3272 -4.5524 40 1 0.5517 -13.1985 -4.1280 41 1 2.8376 -13.4516 -1.2064 42 1 1.8785 -14.3746 -4.0459 43 1 3.3605 -15.0015 -3.1451 44 1 1.8731 -15.7972 -1.2500 45 1 0.3903 -15.1708 -2.1498 46 1 1.4470 -11.5878 -0.2818 47 1 0.4334 -7.2347 2.2604 48 1 -0.8491 -7.9141 1.2260 49 1 -1.3743 -5.6015 2.1325 50 1 -1.3990 -5.7045 0.3552 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273292563.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:32 Heat of formation + Delta-G solvation = -10.845265 kcal Electronic energy + Delta-G solvation = -29247.141538 eV Core-core repulsion = 25240.561861 eV Total energy + Delta-G solvation = -4006.579676 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.63052 -39.79289 -38.34566 -37.05554 -35.05423 -34.36871 -33.03097 -32.11486 -31.03298 -30.20208 -28.65318 -27.51007 -25.36168 -24.06129 -23.49478 -22.99974 -22.56390 -22.12868 -20.92076 -20.17112 -19.03481 -17.48521 -17.27141 -17.02056 -16.46821 -16.29813 -15.88607 -15.67811 -15.20647 -15.05227 -14.62501 -14.59602 -14.37698 -14.23713 -13.80231 -13.43607 -13.36558 -13.13439 -12.95692 -12.64765 -12.52089 -12.50692 -12.25698 -12.10318 -11.91410 -11.58971 -11.43427 -11.23774 -11.01249 -10.97202 -10.88547 -10.79990 -10.70275 -10.45961 -10.06826 -9.90195 -9.87262 -9.66750 -8.97648 -8.85632 -8.72182 -8.54345 -6.87399 -5.71580 -3.00055 1.07683 1.17816 2.49730 2.76294 3.30237 3.46619 3.51947 3.54397 3.75114 3.93825 4.13850 4.36120 4.44719 4.52291 4.58853 4.60090 4.67340 4.72463 4.74430 4.84152 4.88646 4.99167 5.06024 5.12249 5.14655 5.18956 5.26406 5.30555 5.38106 5.46332 5.48071 5.61294 5.65624 5.66010 5.69281 5.69935 5.79407 5.84189 5.88803 5.96433 6.24458 6.28120 6.31553 6.34428 6.38235 6.57204 6.70575 6.77568 7.23323 7.45976 7.73962 8.03918 8.46598 9.58472 10.15752 10.51921 11.51302 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024234 B = 0.001797 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.119636 B =15581.998012 C =15832.108024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.163 3.837 11 C 0.074 3.926 12 H 0.062 0.938 13 C 0.086 3.914 14 N -0.615 5.615 15 C 0.517 3.483 16 O -0.529 6.529 17 C -0.101 4.101 18 C -0.061 4.061 19 C -0.108 4.108 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.051 4.051 23 C -0.117 4.117 24 C -0.177 4.177 25 C -0.170 4.170 26 C -0.098 4.098 27 C 0.071 3.929 28 C 0.045 3.955 29 O -0.356 6.356 30 H 0.254 0.746 31 H 0.388 0.612 32 H 0.028 0.972 33 H 0.036 0.964 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.112 0.888 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.119 0.881 47 H 0.079 0.921 48 H 0.091 0.909 49 H 0.105 0.895 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.784 -31.505 -1.086 31.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.370 5.370 10 C 0.035 3.965 11 C 0.015 3.985 12 H 0.080 0.920 13 C -0.037 4.037 14 N -0.350 5.350 15 C 0.304 3.696 16 O -0.405 6.405 17 C -0.141 4.141 18 C -0.061 4.061 19 C -0.126 4.126 20 C -0.132 4.132 21 C -0.140 4.140 22 C -0.051 4.051 23 C -0.135 4.135 24 C -0.214 4.214 25 C -0.207 4.207 26 C -0.116 4.116 27 C -0.052 4.052 28 C -0.033 4.033 29 O -0.274 6.274 30 H 0.064 0.936 31 H 0.222 0.778 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.130 0.870 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.137 0.863 47 H 0.097 0.903 48 H 0.109 0.891 49 H 0.123 0.877 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.181 -31.286 -1.439 31.395 hybrid contribution 0.032 0.815 -0.057 0.818 sum -2.149 -30.471 -1.496 30.583 Atomic orbital electron populations 1.69687 1.05108 1.25414 1.57817 1.24746 0.95532 0.97667 1.03091 0.86105 0.78777 0.84108 0.77132 1.20553 1.21917 1.21889 1.19284 0.91063 0.84097 1.42523 0.91083 1.42214 1.06059 0.99447 1.89298 1.20629 0.92375 0.84726 0.98784 1.22794 0.92942 0.94281 0.88459 0.91962 1.22334 0.91594 0.85641 1.04144 1.48193 1.35438 1.20790 1.30605 1.20505 0.85006 0.82482 0.81562 1.90734 1.40438 1.78228 1.31131 1.20706 0.99946 0.93730 0.99726 1.19227 0.97209 0.94703 0.94974 1.20985 0.99848 0.98646 0.93161 1.21055 0.98581 0.94524 0.99029 1.21000 0.97373 0.98865 0.96788 1.19031 0.96856 0.95068 0.94192 1.21039 1.00532 0.89404 1.02573 1.23075 1.01109 1.03311 0.93882 1.23034 0.99781 0.95985 1.01869 1.20718 0.97932 0.93830 0.99115 1.22538 0.92852 0.99660 0.90193 1.22915 0.90909 0.86660 1.02822 1.88171 1.46007 1.50425 1.42799 0.93639 0.77837 0.95375 0.94680 0.88086 0.90475 0.87925 0.87848 0.86174 0.85980 0.86152 0.86984 0.88330 0.88422 0.88484 0.88595 0.86300 0.90270 0.89103 0.87745 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.78 13.06 55.49 0.72 -28.06 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -19.11 5.50 -59.91 -0.33 -19.44 16 10 C 0.16 3.39 5.96 -4.04 -0.02 3.37 16 11 C 0.07 1.28 2.87 -26.58 -0.08 1.20 16 12 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 13 C 0.09 1.24 5.93 -3.54 -0.02 1.22 16 14 N -0.62 -7.62 3.02 -172.27 -0.52 -8.14 16 15 C 0.52 6.61 7.70 -10.99 -0.08 6.52 16 16 O -0.53 -8.92 15.50 5.55 0.09 -8.84 16 17 C -0.10 -0.89 4.21 -29.03 -0.12 -1.01 16 18 C -0.06 -0.63 4.37 -104.62 -0.46 -1.09 16 19 C -0.11 -1.11 9.70 -39.59 -0.38 -1.49 16 20 C -0.11 -1.07 10.05 -39.59 -0.40 -1.47 16 21 C -0.12 -1.13 9.30 -39.58 -0.37 -1.50 16 22 C -0.05 -0.50 5.61 -104.62 -0.59 -1.08 16 23 C -0.12 -0.91 6.04 -91.77 -0.55 -1.47 16 24 C -0.18 -1.14 9.86 -26.69 -0.26 -1.40 16 25 C -0.17 -1.05 10.17 -26.69 -0.27 -1.32 16 26 C -0.10 -0.99 9.39 -39.59 -0.37 -1.37 16 27 C 0.07 0.67 6.54 -3.53 -0.02 0.64 16 28 C 0.05 0.54 6.98 37.31 0.26 0.80 16 29 O -0.36 -6.18 10.13 -35.23 -0.36 -6.54 16 30 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.39 10.83 7.54 -40.82 -0.31 10.52 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.10 1.56 7.08 -51.93 -0.37 1.19 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.10 0.66 7.96 -51.93 -0.41 0.25 16 37 H 0.10 0.70 7.60 -51.93 -0.39 0.31 16 38 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 39 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 40 H 0.12 0.89 6.02 -52.49 -0.32 0.57 16 41 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.10 0.60 6.18 -51.93 -0.32 0.28 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.09 0.55 6.06 -51.93 -0.31 0.24 16 49 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 406.56 15.07 6.13 6.13 Total: -1.00 -35.63 406.56 -11.18 -46.82 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -7.90 Total: 7.25 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -3.99 Total: -6.97 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.12 Total: -55.64 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.27 Total: -15.37 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.63 -11.18 -46.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273292563.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.973 kcal (2) G-P(sol) polarization free energy of solvation -35.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds