Wall clock time and date at job start Wed Apr 1 2020 02:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00157 * 2 1 4 4 H 1.48503 * 109.46895 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47419 * 299.99722 * 3 2 1 6 6 H 1.48502 * 109.46876 * 60.00232 * 3 2 1 7 7 C 1.38818 * 119.99694 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99367 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99993 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99739 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46979 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.55286 * 60.12387 * 11 10 9 13 13 C 1.53293 * 109.51350 * 180.24946 * 11 10 9 14 14 N 1.47149 * 108.38615 * 172.22567 * 13 11 10 15 15 C 1.34777 * 120.98438 * 129.44706 * 14 13 11 16 16 O 1.21284 * 119.99523 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00313 * 180.02562 * 15 14 13 18 18 C 1.50702 * 109.46944 * 179.97438 * 17 15 14 19 19 C 1.38261 * 120.00054 * 269.72363 * 18 17 15 20 20 C 1.38203 * 119.99989 * 179.81032 * 19 18 17 21 21 C 1.38260 * 120.00177 * 0.40147 * 20 19 18 22 22 C 1.38212 * 119.99503 * 359.85610 * 21 20 19 23 23 C 1.50702 * 119.99755 * 179.97438 * 22 21 20 24 24 C 1.53002 * 117.50049 * 8.72170 * 23 22 21 25 25 C 1.53002 * 117.49827 * 300.06363 * 23 22 21 26 26 C 1.38208 * 119.99888 * 90.00264 * 18 17 15 27 27 C 1.47158 * 118.03557 * 309.47002 * 14 13 11 28 28 C 1.53292 * 108.38531 * 50.53262 * 27 14 13 29 29 O 1.42956 * 109.22263 * 307.69756 * 28 27 14 30 30 H 0.96997 * 119.99793 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00286 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47155 * 59.99600 * 10 9 7 33 33 H 1.09001 * 109.47058 * 299.99481 * 10 9 7 34 34 H 1.08999 * 109.68479 * 291.95478 * 13 11 10 35 35 H 1.09001 * 109.68027 * 52.50577 * 13 11 10 36 36 H 1.08993 * 109.46926 * 300.00028 * 17 15 14 37 37 H 1.09002 * 109.46756 * 60.00048 * 17 15 14 38 38 H 1.08004 * 119.99504 * 0.02562 * 19 18 17 39 39 H 1.08004 * 120.00408 * 180.23362 * 20 19 18 40 40 H 1.07995 * 120.00291 * 179.83217 * 21 20 19 41 41 H 1.09005 * 115.55134 * 154.39569 * 23 22 21 42 42 H 1.08999 * 117.49416 * 0.02562 * 24 23 22 43 43 H 1.08995 * 117.50049 * 145.01954 * 24 23 22 44 44 H 1.08998 * 117.49974 * 214.98145 * 25 23 22 45 45 H 1.09000 * 117.49975 * 359.97438 * 25 23 22 46 46 H 1.07998 * 120.00287 * 359.97438 * 26 18 17 47 47 H 1.09002 * 109.68029 * 290.80733 * 27 14 13 48 48 H 1.09003 * 109.70935 * 170.27629 * 27 14 13 49 49 H 1.09000 * 109.51123 * 187.77017 * 28 27 14 50 50 H 1.09005 * 109.55129 * 67.64730 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0021 12 1 0.4381 -4.7651 -0.8888 13 6 1.8291 -6.1478 0.0095 14 7 0.8615 -7.2402 0.1987 15 6 0.8507 -8.3077 -0.6239 16 8 1.6468 -8.3783 -1.5362 17 6 -0.1505 -9.4136 -0.4103 18 6 0.0473 -10.4794 -1.4572 19 6 -0.6411 -10.4089 -2.6541 20 6 -0.4568 -11.3842 -3.6158 21 6 0.4097 -12.4349 -3.3776 22 6 1.0938 -12.5082 -2.1789 23 6 2.0379 -13.6538 -1.9190 24 6 2.3534 -14.5885 -3.0884 25 6 1.4560 -15.0686 -1.9451 26 6 0.9124 -11.5305 -1.2184 27 6 -0.0944 -7.1323 1.3123 28 6 -0.7662 -5.7562 1.2413 29 8 0.2408 -4.7441 1.1687 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6840 -3.7142 0.8921 33 1 2.6853 -3.7150 -0.8879 34 1 2.3484 -6.2777 -0.9400 35 1 2.5507 -6.1511 0.8265 36 1 -0.0085 -9.8458 0.5802 37 1 -1.1600 -9.0100 -0.4893 38 1 -1.3203 -9.5897 -2.8390 39 1 -0.9916 -11.3272 -4.5524 40 1 0.5517 -13.1985 -4.1280 41 1 2.8376 -13.4516 -1.2064 42 1 1.8785 -14.3746 -4.0459 43 1 3.3605 -15.0015 -3.1451 44 1 1.8731 -15.7972 -1.2500 45 1 0.3903 -15.1708 -2.1498 46 1 1.4470 -11.5878 -0.2818 47 1 0.4334 -7.2347 2.2604 48 1 -0.8491 -7.9141 1.2260 49 1 -1.3743 -5.6015 2.1325 50 1 -1.3990 -5.7045 0.3552 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273292563.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:30 Heat of formation + Delta-G solvation = -32.530984 kcal Electronic energy + Delta-G solvation = -29248.081901 eV Core-core repulsion = 25240.561861 eV Total energy + Delta-G solvation = -4007.520040 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.58242 -40.57471 -39.44740 -37.66865 -36.66696 -35.72929 -34.08384 -33.52582 -31.88103 -31.67694 -29.58908 -28.69147 -26.83603 -24.96059 -24.66667 -24.01067 -23.43934 -22.90396 -22.30613 -20.94942 -19.90326 -19.24743 -18.33449 -17.95188 -17.64767 -17.04741 -17.02241 -16.58606 -16.48045 -16.08446 -15.95405 -15.68242 -15.27680 -15.12962 -15.01921 -14.86475 -14.38863 -14.31049 -14.07463 -14.02690 -13.59374 -13.38596 -13.14241 -12.98085 -12.92496 -12.81102 -12.61355 -12.43695 -12.24823 -12.05022 -12.01647 -11.88378 -11.86223 -11.62262 -11.55858 -11.23330 -11.19145 -10.97605 -10.89291 -9.69572 -9.61952 -9.39793 -9.01630 -7.94818 -5.24352 0.36782 0.47174 1.47343 1.48866 1.54186 1.59095 1.82147 2.55857 2.66603 2.76743 3.14909 3.38969 3.51554 3.53772 3.62708 3.76092 3.91054 3.96794 3.99957 4.00336 4.08056 4.12155 4.16552 4.18740 4.24583 4.34938 4.37118 4.42938 4.49827 4.52574 4.57127 4.66433 4.74842 4.76343 4.79432 4.89173 4.94092 4.96305 5.07813 5.10462 5.13420 5.18367 5.24580 5.27894 5.47938 5.56025 5.64054 5.69319 6.09463 6.23550 6.27370 6.31349 7.07233 7.32940 8.06610 8.31936 9.29033 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024234 B = 0.001797 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.119636 B =15581.998012 C =15832.108024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.978 3.022 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.248 4.248 8 H 0.078 0.922 9 N -0.739 5.739 10 C 0.159 3.841 11 C 0.089 3.911 12 H 0.047 0.953 13 C 0.096 3.904 14 N -0.616 5.616 15 C 0.514 3.486 16 O -0.578 6.578 17 C -0.093 4.093 18 C -0.074 4.074 19 C -0.128 4.128 20 C -0.124 4.124 21 C -0.132 4.132 22 C -0.060 4.060 23 C -0.136 4.136 24 C -0.176 4.176 25 C -0.159 4.159 26 C -0.115 4.115 27 C 0.075 3.925 28 C 0.035 3.965 29 O -0.388 6.388 30 H 0.251 0.749 31 H 0.376 0.624 32 H 0.030 0.970 33 H 0.040 0.960 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.096 0.904 46 H 0.127 0.873 47 H 0.092 0.908 48 H 0.134 0.866 49 H 0.128 0.872 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.850 -33.278 -0.251 33.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.380 4.380 8 H 0.096 0.904 9 N -0.382 5.382 10 C 0.032 3.968 11 C 0.030 3.970 12 H 0.065 0.935 13 C -0.028 4.028 14 N -0.350 5.350 15 C 0.305 3.695 16 O -0.457 6.457 17 C -0.132 4.132 18 C -0.074 4.074 19 C -0.146 4.146 20 C -0.141 4.141 21 C -0.150 4.150 22 C -0.060 4.060 23 C -0.154 4.154 24 C -0.212 4.212 25 C -0.196 4.196 26 C -0.133 4.133 27 C -0.047 4.047 28 C -0.042 4.042 29 O -0.307 6.307 30 H 0.060 0.940 31 H 0.208 0.792 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.156 0.844 40 H 0.153 0.847 41 H 0.130 0.870 42 H 0.118 0.882 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.114 0.886 46 H 0.145 0.855 47 H 0.111 0.889 48 H 0.152 0.848 49 H 0.145 0.855 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.238 -33.099 -0.580 33.180 hybrid contribution 0.041 1.282 -0.320 1.322 sum -2.196 -31.817 -0.900 31.905 Atomic orbital electron populations 1.69847 1.06690 1.26004 1.59389 1.25622 0.96470 1.01224 1.03555 0.85015 0.78190 0.79472 0.76704 1.18982 1.21938 1.21879 1.19713 0.91599 0.85263 1.41387 0.90444 1.42394 1.05708 1.00779 1.89318 1.20774 0.93144 0.84107 0.98761 1.22423 0.92269 0.94124 0.88145 0.93548 1.22023 0.91828 0.85198 1.03779 1.48289 1.35362 1.19954 1.31346 1.21228 0.84915 0.82937 0.80457 1.90714 1.42549 1.79275 1.33141 1.20774 0.99702 0.91913 1.00830 1.19455 0.97324 0.95161 0.95504 1.21228 1.00502 0.99229 0.93596 1.21346 0.98709 0.94441 0.99640 1.21252 0.97305 0.99288 0.97159 1.19315 0.96979 0.95514 0.94222 1.21086 1.00818 0.89720 1.03732 1.23168 1.01793 1.02548 0.93734 1.23084 0.99828 0.94916 1.01734 1.20954 0.98277 0.94243 0.99785 1.22737 0.93159 0.99199 0.89593 1.23261 0.90129 0.86929 1.03883 1.88104 1.47242 1.53008 1.42354 0.93996 0.79248 0.95184 0.94188 0.89426 0.89728 0.84881 0.85294 0.85526 0.84401 0.84676 0.86963 0.88165 0.87480 0.87171 0.88593 0.85523 0.88934 0.84848 0.85460 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.89 13.06 21.65 0.28 -60.61 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 3 Si 0.98 47.18 29.55 68.60 2.03 49.21 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 7 C -0.25 -14.38 9.99 84.04 0.84 -13.54 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 9 N -0.74 -39.72 5.50 -343.44 -1.89 -41.60 16 10 C 0.16 6.73 5.96 86.38 0.51 7.25 16 11 C 0.09 3.11 2.87 30.69 0.09 3.20 16 12 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 13 C 0.10 2.75 5.93 86.35 0.51 3.26 16 14 N -0.62 -14.22 3.02 -817.34 -2.47 -16.68 16 15 C 0.51 12.42 7.70 87.66 0.68 13.10 16 16 O -0.58 -19.49 15.50 -3.04 -0.05 -19.54 16 17 C -0.09 -1.39 4.21 29.10 0.12 -1.27 16 18 C -0.07 -1.44 4.37 -19.87 -0.09 -1.52 16 19 C -0.13 -2.50 9.70 22.27 0.22 -2.29 16 20 C -0.12 -2.25 10.05 22.27 0.22 -2.02 16 21 C -0.13 -2.34 9.30 22.27 0.21 -2.14 16 22 C -0.06 -1.12 5.61 -19.87 -0.11 -1.23 16 23 C -0.14 -1.98 6.04 -11.54 -0.07 -2.05 16 24 C -0.18 -2.01 9.86 30.62 0.30 -1.71 16 25 C -0.16 -1.70 10.17 30.62 0.31 -1.39 16 26 C -0.11 -2.23 9.39 22.27 0.21 -2.02 16 27 C 0.07 1.17 6.54 86.35 0.56 1.74 16 28 C 0.03 0.77 6.98 72.08 0.50 1.27 16 29 O -0.39 -13.34 10.13 -148.98 -1.51 -14.85 16 30 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 31 H 0.38 21.63 7.54 -92.71 -0.70 20.93 16 32 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.09 2.76 7.08 -2.39 -0.02 2.75 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.13 1.18 7.96 -2.39 -0.02 1.16 16 37 H 0.13 1.27 7.60 -2.39 -0.02 1.25 16 38 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 40 H 0.14 1.85 6.02 -2.91 -0.02 1.83 16 41 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.10 1.09 6.18 -2.39 -0.01 1.08 16 43 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 47 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.13 0.98 6.06 -2.39 -0.01 0.97 16 49 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 50 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -78.88 406.56 2.13 -76.75 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: 0.24 Total: 32.75 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 5.49 Total: -5.42 kcal Atomic # 7 Polarization: -114.83 SS G_CDS: -4.07 Total: -118.90 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -1.56 Total: -34.39 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -78.88 2.13 -76.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273292563.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.222 kcal (2) G-P(sol) polarization free energy of solvation -78.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds