Wall clock time and date at job start Wed Apr 1 2020 03:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00048 * 2 1 4 4 H 1.48492 * 109.46949 * 239.99840 * 3 2 1 5 5 H 1.48498 * 109.46989 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46851 * 120.00027 * 3 2 1 7 7 C 1.37881 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99691 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99905 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.46678 * 184.87662 * 9 7 2 11 11 C 1.48052 * 110.99410 * 184.38008 * 10 9 7 12 12 C 1.54258 * 106.83175 * 146.61369 * 11 10 9 13 13 C 1.54365 * 104.82904 * 358.54753 * 12 11 10 14 14 H 1.08998 * 110.04615 * 95.62603 * 13 12 11 15 15 C 1.49931 * 111.23580 * 302.38030 * 10 9 7 16 16 H 1.09009 * 112.95796 * 79.37528 * 15 10 9 17 17 C 1.54886 * 106.55828 * 313.49902 * 15 10 9 18 18 C 1.52924 * 108.61865 * 184.59671 * 17 15 10 19 19 C 1.50304 * 109.43046 * 52.63791 * 18 17 15 20 20 O 1.21279 * 118.67424 * 159.19157 * 19 18 17 21 21 N 1.33325 * 122.64556 * 339.21478 * 19 18 17 22 22 C 1.46498 * 117.35946 * 180.21890 * 21 19 18 23 23 C 1.52996 * 109.47427 * 89.99945 * 22 21 19 24 24 C 1.50704 * 109.47382 * 179.97438 * 23 22 21 25 25 C 1.38264 * 119.94739 * 269.73030 * 24 23 22 26 26 C 1.38141 * 120.05641 * 179.72166 * 25 24 23 27 27 C 1.38734 * 119.94480 * 0.54757 * 26 25 24 28 28 O 1.35901 * 120.05904 * 179.74952 * 27 26 25 29 29 C 1.38736 * 119.88738 * 359.72350 * 27 26 25 30 30 C 1.38144 * 119.94137 * 0.02562 * 29 27 26 31 31 H 0.97001 * 119.99842 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.46679 * 64.87979 * 9 7 2 33 33 H 1.08995 * 109.47171 * 304.87658 * 9 7 2 34 34 H 1.08993 * 109.98965 * 27.26630 * 11 10 9 35 35 H 1.08999 * 110.02118 * 265.97340 * 11 10 9 36 36 H 1.08998 * 110.37077 * 239.70815 * 12 11 10 37 37 H 1.08998 * 110.36959 * 117.38357 * 12 11 10 38 38 H 1.08997 * 109.38310 * 65.11057 * 17 15 10 39 39 H 1.09005 * 110.22633 * 304.57691 * 17 15 10 40 40 H 1.09006 * 109.47651 * 292.64652 * 18 17 15 41 41 H 1.08998 * 109.47969 * 172.63392 * 18 17 15 42 42 H 1.09005 * 109.46605 * 209.99920 * 22 21 19 43 43 H 1.09001 * 109.47243 * 329.99163 * 22 21 19 44 44 H 1.08991 * 109.47256 * 299.99458 * 23 22 21 45 45 H 1.09004 * 109.47285 * 60.00123 * 23 22 21 46 46 H 1.08000 * 119.96859 * 359.97438 * 25 24 23 47 47 H 1.07997 * 120.02895 * 180.27289 * 26 25 24 48 48 H 0.96702 * 113.99574 * 269.98022 * 28 27 26 49 49 H 1.07994 * 120.03208 * 179.97438 * 29 27 26 50 50 H 1.08004 * 119.97253 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2011 -3.6133 0.1189 11 6 1.5060 -4.9165 0.0172 12 6 2.4796 -5.8889 -0.6800 13 6 3.7316 -5.0404 -0.9891 14 1 4.4735 -5.1683 -0.2009 15 6 3.2078 -3.5887 -0.9919 16 1 4.0064 -2.8655 -0.8261 17 6 2.4140 -3.3598 -2.3020 18 6 3.3842 -3.4412 -3.4813 19 6 4.1614 -4.7253 -3.4016 20 8 4.6848 -5.1522 -4.4090 21 7 4.2981 -5.4141 -2.2683 22 6 5.0848 -6.6488 -2.3216 23 6 6.5527 -6.3312 -2.0300 24 6 7.3619 -7.6015 -2.0842 25 6 7.5425 -8.3542 -0.9385 26 6 8.2789 -9.5219 -0.9868 27 6 8.8471 -9.9333 -2.1838 28 8 9.5763 -11.0791 -2.2328 29 6 8.6691 -9.1734 -3.3307 30 6 7.9274 -8.0091 -3.2782 31 1 -0.4850 0.8401 -0.0004 32 1 0.6918 -2.5958 -0.9302 33 1 0.5600 -2.5198 0.8433 34 1 0.5980 -4.8091 -0.5761 35 1 1.2589 -5.2863 1.0123 36 1 2.0410 -6.2682 -1.6029 37 1 2.7349 -6.7129 -0.0137 38 1 1.9526 -2.3726 -2.2776 39 1 1.6417 -4.1211 -2.4127 40 1 4.0725 -2.5968 -3.4447 41 1 2.8237 -3.4129 -4.4157 42 1 4.7099 -7.3507 -1.5766 43 1 4.9989 -7.0918 -3.3138 44 1 6.9276 -5.6294 -2.7748 45 1 6.6386 -5.8883 -1.0377 46 1 7.1040 -8.0310 -0.0060 47 1 8.4160 -10.1118 -0.0926 48 1 10.5189 -10.9532 -2.0573 49 1 9.1107 -9.4912 -4.2636 50 1 7.7882 -7.4173 -4.1709 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030907.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:28 Heat of formation + Delta-G solvation = -43.993434 kcal Electronic energy + Delta-G solvation = -30500.413535 eV Core-core repulsion = 26492.396446 eV Total energy + Delta-G solvation = -4008.017089 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.89109 -39.97828 -38.30687 -37.35813 -35.46233 -33.40866 -32.88944 -32.04441 -31.25449 -30.31903 -27.97725 -27.64027 -26.30620 -24.34005 -23.28558 -23.04706 -22.67918 -21.33910 -21.28112 -19.58464 -18.69986 -18.01084 -16.82399 -16.54077 -16.21027 -15.99793 -15.96438 -15.56002 -15.40218 -14.86689 -14.60633 -14.15593 -14.02294 -13.88618 -13.76333 -13.50040 -13.36066 -13.17503 -12.84838 -12.47175 -12.27714 -12.12510 -12.02343 -11.79718 -11.68232 -11.54985 -11.31799 -11.15035 -11.11132 -10.88609 -10.76526 -10.70920 -10.57514 -10.50047 -10.39091 -9.88981 -9.31946 -9.25363 -9.20487 -8.89972 -8.54075 -8.48042 -7.40888 -6.11588 -4.13651 0.93555 1.09029 2.79518 3.05932 3.27568 3.33011 3.34956 3.36123 3.92808 4.35027 4.54828 4.62235 4.65034 4.71835 4.77494 4.89049 4.97929 5.02669 5.11706 5.19017 5.21688 5.27070 5.28468 5.38219 5.42012 5.50757 5.55854 5.63583 5.69679 5.70646 5.72690 5.84190 5.94380 6.00885 6.05160 6.09299 6.15164 6.17756 6.21077 6.35162 6.40297 6.55319 6.57468 6.63124 6.78780 7.04988 7.22547 7.33245 7.59276 7.65822 7.87177 8.05444 8.30478 8.39057 8.92884 9.51178 10.99190 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019046 B = 0.002339 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.738483 B =11968.373411 C =12152.099805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.061 0.939 9 C 0.183 3.817 10 N -0.513 5.513 11 C 0.037 3.963 12 C -0.140 4.140 13 C 0.136 3.864 14 H 0.090 0.910 15 C 0.082 3.918 16 H 0.106 0.894 17 C -0.149 4.149 18 C -0.133 4.133 19 C 0.522 3.478 20 O -0.563 6.563 21 N -0.591 5.591 22 C 0.113 3.887 23 C -0.095 4.095 24 C -0.083 4.083 25 C -0.099 4.099 26 C -0.144 4.144 27 C 0.095 3.905 28 O -0.501 6.501 29 C -0.144 4.144 30 C -0.096 4.096 31 H 0.263 0.737 32 H -0.001 1.001 33 H 0.035 0.965 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.128 0.872 47 H 0.127 0.873 48 H 0.388 0.612 49 H 0.127 0.873 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.232 -16.738 -3.166 22.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.550 4.550 8 H 0.079 0.921 9 C 0.058 3.942 10 N -0.237 5.237 11 C -0.092 4.092 12 C -0.179 4.179 13 C 0.031 3.969 14 H 0.108 0.892 15 C -0.026 4.026 16 H 0.124 0.876 17 C -0.187 4.187 18 C -0.173 4.173 19 C 0.312 3.688 20 O -0.442 6.442 21 N -0.322 5.322 22 C -0.011 4.011 23 C -0.133 4.133 24 C -0.083 4.083 25 C -0.118 4.118 26 C -0.162 4.162 27 C 0.051 3.949 28 O -0.311 6.311 29 C -0.162 4.162 30 C -0.114 4.114 31 H 0.072 0.928 32 H 0.016 0.984 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.124 0.876 39 H 0.079 0.921 40 H 0.117 0.883 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.146 0.854 47 H 0.145 0.855 48 H 0.244 0.756 49 H 0.145 0.855 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 13.983 -16.992 -3.284 22.249 hybrid contribution 0.351 1.021 -0.519 1.197 sum 14.334 -15.971 -3.803 21.795 Atomic orbital electron populations 1.69935 1.06040 1.27006 1.50419 1.24966 0.94822 0.99263 0.95277 0.86607 0.79515 0.82911 0.78689 1.20223 1.21370 1.20168 1.21064 0.93268 0.89897 1.50734 0.92051 1.19940 0.90661 0.87333 0.96266 1.65094 1.15465 1.02020 1.41143 1.22835 0.95733 0.90974 0.99642 1.22843 0.96078 0.98387 1.00569 1.21731 0.95118 0.96127 0.83905 0.89225 1.23329 0.95957 0.93102 0.90248 0.87574 1.22574 0.97688 1.05224 0.93246 1.21639 0.99334 0.94972 1.01391 1.20387 0.80115 0.86193 0.82150 1.90661 1.49746 1.69588 1.34205 1.47097 1.51429 1.24483 1.09203 1.21455 0.89429 0.86665 1.03510 1.20943 0.94513 0.94523 1.03346 1.19860 0.98202 0.96895 0.93364 1.20992 0.98273 0.94171 0.98321 1.21403 1.00269 0.97046 0.97515 1.18495 0.96834 0.86739 0.92823 1.84832 1.23699 1.28955 1.93653 1.21424 1.01343 0.94971 0.98462 1.21046 0.96499 0.95969 0.97899 0.92775 0.98361 0.94677 0.94196 0.91019 0.91527 0.91209 0.87584 0.92061 0.88263 0.88784 0.90588 0.89556 0.90317 0.90550 0.85408 0.85486 0.75627 0.85512 0.85312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.17 13.29 55.43 0.74 -24.43 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.51 -13.08 7.90 -34.44 -0.27 -13.35 16 8 H 0.06 1.54 6.71 -52.49 -0.35 1.19 16 9 C 0.18 4.32 4.09 -4.97 -0.02 4.30 16 10 N -0.51 -9.81 5.30 -221.81 -1.18 -10.99 16 11 C 0.04 0.59 5.98 -2.53 -0.02 0.58 16 12 C -0.14 -1.82 5.76 -25.36 -0.15 -1.96 16 13 C 0.14 1.84 3.09 -67.42 -0.21 1.63 16 14 H 0.09 1.13 8.13 -51.93 -0.42 0.71 16 15 C 0.08 1.38 2.89 -64.32 -0.19 1.19 16 16 H 0.11 1.87 7.30 -51.92 -0.38 1.50 16 17 C -0.15 -2.48 3.98 -25.78 -0.10 -2.59 16 18 C -0.13 -1.99 6.05 -28.11 -0.17 -2.16 16 19 C 0.52 8.07 7.46 -11.82 -0.09 7.99 16 20 O -0.56 -10.06 16.19 5.56 0.09 -9.97 16 21 N -0.59 -7.90 2.43 -166.31 -0.40 -8.31 16 22 C 0.11 1.30 5.07 -4.04 -0.02 1.28 16 23 C -0.09 -0.99 5.65 -27.88 -0.16 -1.15 16 24 C -0.08 -0.82 5.14 -104.60 -0.54 -1.36 16 25 C -0.10 -0.90 9.69 -39.61 -0.38 -1.28 16 26 C -0.14 -1.28 9.99 -39.43 -0.39 -1.68 16 27 C 0.10 0.89 6.71 -39.21 -0.26 0.63 16 28 O -0.50 -4.13 13.50 -19.43 -0.26 -4.40 16 29 C -0.14 -1.35 9.99 -39.43 -0.39 -1.74 16 30 C -0.10 -0.95 9.69 -39.61 -0.38 -1.34 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.00 -0.03 6.15 -51.93 -0.32 -0.35 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.04 0.67 7.36 -51.93 -0.38 0.29 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.07 0.88 7.96 -51.93 -0.41 0.47 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.11 2.10 5.94 -51.93 -0.31 1.79 16 39 H 0.06 1.02 6.57 -51.93 -0.34 0.68 16 40 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.08 0.77 7.81 -51.93 -0.41 0.37 16 43 H 0.09 1.13 7.14 -51.93 -0.37 0.76 16 44 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 45 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 46 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 47 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 48 H 0.39 1.30 9.06 45.56 0.41 1.71 16 49 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 50 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 393.70 15.07 5.93 5.93 Total: -1.00 -30.59 393.70 -11.00 -41.60 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.06 Total: 4.57 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -3.84 Total: -9.54 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: -0.84 Total: -43.73 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.17 Total: -14.37 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.59 -11.00 -41.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030907.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.396 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds