Wall clock time and date at job start Wed Apr 1 2020 03:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99901 * 2 1 4 4 H 1.48494 * 109.47453 * 270.00723 * 3 2 1 5 5 H 1.48494 * 109.47144 * 30.00621 * 3 2 1 6 6 H 1.48502 * 109.47110 * 150.00658 * 3 2 1 7 7 C 1.38809 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99587 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00508 * 179.97438 * 7 2 1 10 10 C 1.46501 * 120.00244 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46853 * 172.60804 * 10 9 7 12 12 H 1.08995 * 109.87706 * 39.61775 * 11 10 9 13 13 C 1.54331 * 109.87939 * 160.79272 * 11 10 9 14 14 C 1.55445 * 102.96702 * 141.60577 * 13 11 10 15 15 C 1.54910 * 101.45280 * 324.51783 * 14 13 11 16 16 N 1.47019 * 109.88134 * 278.59691 * 11 10 9 17 17 C 1.34777 * 125.64969 * 61.66752 * 16 11 10 18 18 O 1.21282 * 119.99836 * 358.01229 * 17 16 11 19 19 C 1.50696 * 120.00207 * 178.01594 * 17 16 11 20 20 C 1.50697 * 109.82689 * 80.70876 * 19 17 16 21 21 C 1.38243 * 120.00126 * 90.42734 * 20 19 17 22 22 C 1.38237 * 119.99742 * 179.77013 * 21 20 19 23 23 C 1.38232 * 120.00088 * 0.47860 * 22 21 20 24 24 C 1.38231 * 119.99896 * 359.79751 * 23 22 21 25 25 C 1.38236 * 120.00562 * 359.95068 * 24 23 22 26 26 C 1.54391 * 109.83032 * 201.69062 * 19 17 16 27 27 C 1.55300 * 102.25313 * 98.15246 * 26 19 17 28 28 C 1.54948 * 100.94212 * 34.13746 * 27 26 19 29 29 O 1.43236 * 109.83090 * 319.82050 * 19 17 16 30 30 H 0.96998 * 119.99768 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99524 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.46839 * 52.60247 * 10 9 7 33 33 H 1.09000 * 109.46926 * 292.60602 * 10 9 7 34 34 H 1.08997 * 110.71550 * 259.97041 * 13 11 10 35 35 H 1.08996 * 110.72223 * 23.24551 * 13 11 10 36 36 H 1.08997 * 111.11614 * 206.45851 * 14 13 11 37 37 H 1.09005 * 111.00995 * 82.52423 * 14 13 11 38 38 H 1.08997 * 110.36736 * 278.10644 * 15 14 13 39 39 H 1.09005 * 110.36464 * 155.89585 * 15 14 13 40 40 H 1.07996 * 119.99803 * 359.97438 * 21 20 19 41 41 H 1.08005 * 119.99411 * 180.25200 * 22 21 20 42 42 H 1.07996 * 119.99686 * 179.76614 * 23 22 21 43 43 H 1.08008 * 119.99611 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.00243 * 179.97438 * 25 24 23 45 45 H 1.09006 * 110.84615 * 216.34863 * 26 19 17 46 46 H 1.08996 * 110.84432 * 339.96006 * 26 19 17 47 47 H 1.09000 * 111.12802 * 276.21482 * 27 26 19 48 48 H 1.09004 * 111.15803 * 152.06646 * 27 26 19 49 49 H 1.09003 * 110.31024 * 204.64217 * 28 27 26 50 50 H 1.08999 * 110.39621 * 82.50826 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 6 5.6060 -2.1972 -0.1873 12 1 5.8946 -1.3136 0.3818 13 6 6.4255 -3.4181 0.2813 14 6 7.5734 -3.4898 -0.7645 15 6 6.8430 -3.0394 -2.0542 16 7 5.9030 -1.9931 -1.6126 17 6 5.3996 -1.0118 -2.3873 18 8 4.6029 -0.2228 -1.9250 19 6 5.8266 -0.8949 -3.8277 20 6 5.0553 -1.8773 -4.6708 21 6 3.8576 -1.5006 -5.2494 22 6 3.1524 -2.4003 -6.0267 23 6 3.6400 -3.6797 -6.2174 24 6 4.8347 -4.0581 -5.6341 25 6 5.5426 -3.1568 -4.8611 26 6 5.5760 0.5422 -4.3333 27 6 6.9802 1.1905 -4.1932 28 6 7.8954 -0.0178 -4.5145 29 8 7.2307 -1.1548 -3.9409 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3621 -0.0014 32 1 3.7530 -3.0977 -0.8172 33 1 3.9521 -2.9828 0.9478 34 1 6.8254 -3.2531 1.2818 35 1 5.8198 -4.3237 0.2514 36 1 7.9507 -4.5075 -0.8642 37 1 8.3778 -2.7998 -0.5098 38 1 6.3003 -3.8758 -2.4946 39 1 7.5557 -2.6311 -2.7709 40 1 3.4745 -0.5025 -5.0968 41 1 2.2187 -2.1047 -6.4821 42 1 3.0871 -4.3837 -6.8215 43 1 5.2154 -5.0578 -5.7828 44 1 6.4758 -3.4526 -4.4051 45 1 5.2535 0.5364 -5.3746 46 1 4.8480 1.0535 -3.7035 47 1 7.1471 1.5508 -3.1781 48 1 7.1180 1.9916 -4.9194 49 1 8.8756 0.1177 -4.0571 50 1 7.9956 -0.1423 -5.5927 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277990828.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:23 Heat of formation + Delta-G solvation = -12.155899 kcal Electronic energy + Delta-G solvation = -32917.159981 eV Core-core repulsion = 28910.523471 eV Total energy + Delta-G solvation = -4006.636510 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.05791 -39.08981 -38.37359 -37.01047 -34.38822 -32.58413 -32.38182 -31.32339 -31.05252 -30.74719 -29.06590 -28.20142 -25.16016 -24.22587 -22.99720 -22.84119 -21.86694 -21.38076 -21.11295 -20.38091 -18.88665 -17.93210 -17.30519 -16.84749 -16.46743 -15.92254 -15.44840 -15.23911 -14.73992 -14.59526 -14.39228 -14.04513 -13.87078 -13.65834 -13.53247 -13.17833 -13.12980 -13.01799 -12.62008 -12.55115 -12.41964 -12.05688 -11.97125 -11.83699 -11.70517 -11.42178 -11.39341 -11.19283 -10.96827 -10.85193 -10.82137 -10.63849 -10.56246 -10.35096 -10.27377 -9.90924 -9.40568 -9.18879 -8.83286 -8.65726 -8.59151 -8.20039 -6.89771 -5.53615 -2.83781 1.32224 1.48005 2.94467 3.22763 3.50017 3.60962 3.66045 3.72791 3.84261 4.37379 4.52252 4.58668 4.66154 4.79604 4.87396 4.94484 4.96855 4.99331 5.01825 5.06904 5.16510 5.26356 5.38327 5.43964 5.47662 5.50518 5.60641 5.62571 5.66984 5.74045 5.76869 5.84702 5.91008 5.94041 5.98267 5.99288 6.06356 6.06906 6.10084 6.16633 6.28799 6.45693 6.47485 6.51864 6.56848 6.77934 6.80316 6.95978 7.02841 7.89216 8.22701 8.58490 8.67654 9.52277 10.25554 10.47315 11.65403 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009010 B = 0.005341 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.045786 B = 5240.941136 C = 5768.190651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.002 3.998 3 Si 0.898 3.102 4 H -0.283 1.283 5 H -0.303 1.303 6 H -0.283 1.283 7 C -0.228 4.228 8 H 0.082 0.918 9 N -0.742 5.742 10 C 0.153 3.847 11 C 0.125 3.875 12 H 0.072 0.928 13 C -0.124 4.124 14 C -0.132 4.132 15 C 0.091 3.909 16 N -0.601 5.601 17 C 0.531 3.469 18 O -0.487 6.487 19 C 0.144 3.856 20 C -0.091 4.091 21 C -0.096 4.096 22 C -0.119 4.119 23 C -0.115 4.115 24 C -0.127 4.127 25 C -0.096 4.096 26 C -0.142 4.142 27 C -0.155 4.155 28 C 0.048 3.952 29 O -0.360 6.360 30 H 0.255 0.745 31 H 0.372 0.628 32 H 0.028 0.972 33 H 0.025 0.975 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.129 0.871 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.086 0.914 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.287 -6.460 -12.682 24.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.192 4.192 3 Si 0.730 3.270 4 H -0.209 1.209 5 H -0.230 1.230 6 H -0.209 1.209 7 C -0.358 4.358 8 H 0.100 0.900 9 N -0.390 5.390 10 C 0.024 3.976 11 C 0.021 3.979 12 H 0.090 0.910 13 C -0.162 4.162 14 C -0.170 4.170 15 C -0.032 4.032 16 N -0.336 5.336 17 C 0.316 3.684 18 O -0.360 6.360 19 C 0.101 3.899 20 C -0.092 4.092 21 C -0.114 4.114 22 C -0.137 4.137 23 C -0.134 4.134 24 C -0.145 4.145 25 C -0.114 4.114 26 C -0.179 4.179 27 C -0.193 4.193 28 C -0.028 4.028 29 O -0.279 6.279 30 H 0.064 0.936 31 H 0.208 0.792 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.117 0.883 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.147 0.853 45 H 0.105 0.895 46 H 0.127 0.873 47 H 0.098 0.902 48 H 0.104 0.896 49 H 0.105 0.895 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 19.691 -6.205 -12.415 24.091 hybrid contribution 0.331 1.223 -0.121 1.273 sum 20.022 -4.982 -12.536 24.142 Atomic orbital electron populations 1.69735 1.05145 1.25395 1.59046 1.24558 0.95074 0.97155 1.02456 0.86309 0.78443 0.84490 0.77783 1.20940 1.23013 1.20927 1.19010 0.81060 0.94270 1.41463 0.89997 1.42800 1.03755 1.02238 1.90163 1.20949 0.88157 0.90345 0.98144 1.21964 0.96702 0.97821 0.81378 0.91011 1.22680 0.96462 0.98033 0.99035 1.22820 0.97590 1.01674 0.94966 1.22671 0.92254 0.90837 0.97414 1.48299 1.46196 1.28662 1.10412 1.19884 0.81328 0.80843 0.86332 1.90790 1.31563 1.41136 1.72471 1.20891 0.81998 0.95056 0.91958 1.19680 0.96004 0.94844 0.98666 1.21101 0.93890 1.00449 0.95983 1.21125 0.99717 0.93790 0.99049 1.21170 0.96196 0.96245 0.99741 1.21098 0.95624 0.99356 0.98426 1.21080 1.00003 0.92459 0.97880 1.23236 0.99100 0.92530 1.03050 1.23264 0.94410 0.98337 1.03260 1.23448 0.96329 0.84806 0.98197 1.88382 1.17578 1.38954 1.82991 0.93552 0.79177 0.95436 0.95699 0.90192 0.90266 0.90192 0.90884 0.92001 0.88269 0.85534 0.85817 0.86175 0.86110 0.85322 0.89467 0.87336 0.90177 0.89566 0.89536 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -31.80 13.97 55.49 0.78 -31.03 16 2 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 3 Si 0.90 25.42 27.39 -169.99 -4.66 20.77 16 4 H -0.28 -8.02 7.11 56.52 0.40 -7.62 16 5 H -0.30 -8.51 7.11 56.52 0.40 -8.10 16 6 H -0.28 -7.78 6.52 56.52 0.37 -7.41 16 7 C -0.23 -7.10 10.47 -15.06 -0.16 -7.25 16 8 H 0.08 2.71 8.06 -52.48 -0.42 2.28 16 9 N -0.74 -19.86 3.94 -59.91 -0.24 -20.09 16 10 C 0.15 3.30 5.60 -4.04 -0.02 3.27 16 11 C 0.12 2.13 3.06 -66.95 -0.20 1.92 16 12 H 0.07 1.32 7.98 -51.93 -0.41 0.90 16 13 C -0.12 -1.50 6.40 -24.74 -0.16 -1.65 16 14 C -0.13 -1.32 7.11 -24.43 -0.17 -1.50 16 15 C 0.09 1.12 4.96 -2.53 -0.01 1.10 16 16 N -0.60 -9.91 3.05 -163.02 -0.50 -10.40 16 17 C 0.53 9.90 6.60 -10.99 -0.07 9.82 16 18 O -0.49 -11.31 11.93 5.56 0.07 -11.25 16 19 C 0.14 2.13 0.71 -92.20 -0.07 2.06 16 20 C -0.09 -1.35 4.79 -104.62 -0.50 -1.85 16 21 C -0.10 -1.46 8.75 -39.58 -0.35 -1.81 16 22 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 23 C -0.12 -1.39 10.05 -39.59 -0.40 -1.79 16 24 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 25 C -0.10 -1.25 8.21 -39.58 -0.33 -1.58 16 26 C -0.14 -1.94 4.98 -24.78 -0.12 -2.07 16 27 C -0.16 -1.67 7.16 -24.48 -0.18 -1.84 16 28 C 0.05 0.47 7.78 38.19 0.30 0.77 16 29 O -0.36 -4.46 6.61 -35.23 -0.23 -4.70 16 30 H 0.25 8.19 8.31 -40.82 -0.34 7.86 16 31 H 0.37 10.14 3.56 -40.82 -0.15 9.99 16 32 H 0.03 0.64 8.12 -51.93 -0.42 0.21 16 33 H 0.03 0.53 8.01 -51.93 -0.42 0.11 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.93 7.85 -51.93 -0.41 0.52 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.75 6.80 -51.93 -0.35 0.40 16 39 H 0.10 1.15 4.86 -51.93 -0.25 0.90 16 40 H 0.13 1.95 6.85 -52.49 -0.36 1.59 16 41 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 42 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 44 H 0.13 1.49 5.19 -52.49 -0.27 1.22 16 45 H 0.09 1.05 6.89 -51.93 -0.36 0.69 16 46 H 0.11 1.82 6.72 -51.93 -0.35 1.47 16 47 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 380.23 15.07 5.73 5.73 Total: -1.00 -37.77 380.23 -9.95 -47.72 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -7.57 Total: 9.57 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -3.33 Total: -6.32 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: 0.04 Total: -61.52 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.17 Total: -15.95 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -4.66 Total: 20.77 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.77 -9.95 -47.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277990828.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.565 kcal (2) G-P(sol) polarization free energy of solvation -37.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds