Wall clock time and date at job start Wed Apr 1 2020 03:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99901 * 2 1 4 4 H 1.48494 * 109.47453 * 270.00723 * 3 2 1 5 5 H 1.48494 * 109.47144 * 30.00621 * 3 2 1 6 6 H 1.48502 * 109.47110 * 150.00658 * 3 2 1 7 7 C 1.38809 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99587 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00508 * 179.97438 * 7 2 1 10 10 C 1.46501 * 120.00244 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46853 * 172.60804 * 10 9 7 12 12 H 1.08995 * 109.87706 * 39.61775 * 11 10 9 13 13 C 1.54331 * 109.87939 * 160.79272 * 11 10 9 14 14 C 1.55445 * 102.96702 * 141.60577 * 13 11 10 15 15 C 1.54910 * 101.45280 * 324.51783 * 14 13 11 16 16 N 1.47019 * 109.88134 * 278.59691 * 11 10 9 17 17 C 1.34777 * 125.64969 * 61.66752 * 16 11 10 18 18 O 1.21282 * 119.99836 * 358.01229 * 17 16 11 19 19 C 1.50696 * 120.00207 * 178.01594 * 17 16 11 20 20 C 1.50697 * 109.82689 * 80.70876 * 19 17 16 21 21 C 1.38243 * 120.00126 * 90.42734 * 20 19 17 22 22 C 1.38237 * 119.99742 * 179.77013 * 21 20 19 23 23 C 1.38232 * 120.00088 * 0.47860 * 22 21 20 24 24 C 1.38231 * 119.99896 * 359.79751 * 23 22 21 25 25 C 1.38236 * 120.00562 * 359.95068 * 24 23 22 26 26 C 1.54391 * 109.83032 * 201.69062 * 19 17 16 27 27 C 1.55300 * 102.25313 * 98.15246 * 26 19 17 28 28 C 1.54948 * 100.94212 * 34.13746 * 27 26 19 29 29 O 1.43236 * 109.83090 * 319.82050 * 19 17 16 30 30 H 0.96998 * 119.99768 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99524 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.46839 * 52.60247 * 10 9 7 33 33 H 1.09000 * 109.46926 * 292.60602 * 10 9 7 34 34 H 1.08997 * 110.71550 * 259.97041 * 13 11 10 35 35 H 1.08996 * 110.72223 * 23.24551 * 13 11 10 36 36 H 1.08997 * 111.11614 * 206.45851 * 14 13 11 37 37 H 1.09005 * 111.00995 * 82.52423 * 14 13 11 38 38 H 1.08997 * 110.36736 * 278.10644 * 15 14 13 39 39 H 1.09005 * 110.36464 * 155.89585 * 15 14 13 40 40 H 1.07996 * 119.99803 * 359.97438 * 21 20 19 41 41 H 1.08005 * 119.99411 * 180.25200 * 22 21 20 42 42 H 1.07996 * 119.99686 * 179.76614 * 23 22 21 43 43 H 1.08008 * 119.99611 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.00243 * 179.97438 * 25 24 23 45 45 H 1.09006 * 110.84615 * 216.34863 * 26 19 17 46 46 H 1.08996 * 110.84432 * 339.96006 * 26 19 17 47 47 H 1.09000 * 111.12802 * 276.21482 * 27 26 19 48 48 H 1.09004 * 111.15803 * 152.06646 * 27 26 19 49 49 H 1.09003 * 110.31024 * 204.64217 * 28 27 26 50 50 H 1.08999 * 110.39621 * 82.50826 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 6 5.6060 -2.1972 -0.1873 12 1 5.8946 -1.3136 0.3818 13 6 6.4255 -3.4181 0.2813 14 6 7.5734 -3.4898 -0.7645 15 6 6.8430 -3.0394 -2.0542 16 7 5.9030 -1.9931 -1.6126 17 6 5.3996 -1.0118 -2.3873 18 8 4.6029 -0.2228 -1.9250 19 6 5.8266 -0.8949 -3.8277 20 6 5.0553 -1.8773 -4.6708 21 6 3.8576 -1.5006 -5.2494 22 6 3.1524 -2.4003 -6.0267 23 6 3.6400 -3.6797 -6.2174 24 6 4.8347 -4.0581 -5.6341 25 6 5.5426 -3.1568 -4.8611 26 6 5.5760 0.5422 -4.3333 27 6 6.9802 1.1905 -4.1932 28 6 7.8954 -0.0178 -4.5145 29 8 7.2307 -1.1548 -3.9409 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3621 -0.0014 32 1 3.7530 -3.0977 -0.8172 33 1 3.9521 -2.9828 0.9478 34 1 6.8254 -3.2531 1.2818 35 1 5.8198 -4.3237 0.2514 36 1 7.9507 -4.5075 -0.8642 37 1 8.3778 -2.7998 -0.5098 38 1 6.3003 -3.8758 -2.4946 39 1 7.5557 -2.6311 -2.7709 40 1 3.4745 -0.5025 -5.0968 41 1 2.2187 -2.1047 -6.4821 42 1 3.0871 -4.3837 -6.8215 43 1 5.2154 -5.0578 -5.7828 44 1 6.4758 -3.4526 -4.4051 45 1 5.2535 0.5364 -5.3746 46 1 4.8480 1.0535 -3.7035 47 1 7.1471 1.5508 -3.1781 48 1 7.1180 1.9916 -4.9194 49 1 8.8756 0.1177 -4.0571 50 1 7.9956 -0.1423 -5.5927 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277990828.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:21 Heat of formation + Delta-G solvation = -36.814037 kcal Electronic energy + Delta-G solvation = -32918.229238 eV Core-core repulsion = 28910.523471 eV Total energy + Delta-G solvation = -4007.705767 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.19283 -40.27525 -39.35591 -38.34320 -36.44261 -33.75681 -33.59047 -33.22985 -32.14401 -31.75736 -30.68788 -29.19493 -26.79532 -25.45930 -24.21316 -23.94809 -23.49785 -22.40849 -22.23950 -21.58601 -20.25070 -19.68346 -18.70295 -18.07950 -17.63493 -16.89163 -16.68066 -16.60311 -16.39760 -15.81016 -15.71239 -15.52878 -15.07721 -14.88905 -14.72977 -14.64331 -14.41684 -14.17577 -14.13451 -13.83154 -13.73616 -13.54597 -13.34103 -13.02312 -12.98205 -12.89319 -12.80075 -12.32020 -12.25610 -12.13601 -11.96198 -11.95379 -11.84130 -11.80370 -11.72265 -11.52604 -11.35122 -11.02409 -10.41618 -9.85905 -9.69365 -9.58758 -9.17038 -8.04986 -5.30958 0.28727 0.45798 1.26507 1.36291 1.43490 1.61378 2.00802 2.47407 2.49018 2.81220 3.27409 3.41338 3.47069 3.50506 3.61730 3.75158 3.92932 3.97388 3.99632 4.06617 4.12043 4.16017 4.23168 4.28712 4.31329 4.35624 4.54884 4.62822 4.66258 4.66900 4.73281 4.74879 4.81924 4.83092 4.91074 4.98547 4.99207 5.05591 5.08589 5.11908 5.13164 5.16476 5.39240 5.49199 5.52259 5.55290 5.56667 5.70729 5.82266 6.04881 6.20448 6.60693 7.08619 7.25718 7.93504 8.12265 9.17423 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009010 B = 0.005341 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.045786 B = 5240.941136 C = 5768.190651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.059 4.059 3 Si 0.963 3.037 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.217 4.217 8 H 0.051 0.949 9 N -0.744 5.744 10 C 0.150 3.850 11 C 0.124 3.876 12 H 0.057 0.943 13 C -0.115 4.115 14 C -0.117 4.117 15 C 0.084 3.916 16 N -0.602 5.602 17 C 0.518 3.482 18 O -0.547 6.547 19 C 0.155 3.845 20 C -0.108 4.108 21 C -0.126 4.126 22 C -0.133 4.133 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.100 4.100 26 C -0.146 4.146 27 C -0.150 4.150 28 C 0.047 3.953 29 O -0.358 6.358 30 H 0.255 0.745 31 H 0.370 0.630 32 H 0.009 0.991 33 H 0.035 0.965 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.132 0.868 42 H 0.149 0.851 43 H 0.155 0.845 44 H 0.146 0.854 45 H 0.098 0.902 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.111 0.889 49 H 0.111 0.889 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.277 -8.333 -13.651 29.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.250 4.250 3 Si 0.794 3.206 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.198 1.198 7 C -0.349 4.349 8 H 0.069 0.931 9 N -0.392 5.392 10 C 0.022 3.978 11 C 0.020 3.980 12 H 0.075 0.925 13 C -0.153 4.153 14 C -0.154 4.154 15 C -0.037 4.037 16 N -0.335 5.335 17 C 0.305 3.695 18 O -0.424 6.424 19 C 0.112 3.888 20 C -0.109 4.109 21 C -0.144 4.144 22 C -0.151 4.151 23 C -0.134 4.134 24 C -0.141 4.141 25 C -0.118 4.118 26 C -0.184 4.184 27 C -0.187 4.187 28 C -0.028 4.028 29 O -0.278 6.278 30 H 0.064 0.936 31 H 0.207 0.793 32 H 0.027 0.973 33 H 0.053 0.947 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.133 0.867 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.150 0.850 42 H 0.166 0.834 43 H 0.173 0.827 44 H 0.164 0.836 45 H 0.116 0.884 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.130 0.870 49 H 0.129 0.871 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 23.759 -8.137 -13.385 28.458 hybrid contribution -0.928 1.672 0.136 1.917 sum 22.831 -6.465 -13.249 27.177 Atomic orbital electron populations 1.69873 1.06652 1.26185 1.61016 1.25243 0.95897 1.00466 1.03350 0.85265 0.77538 0.80478 0.77335 1.21679 1.22262 1.19805 1.19030 0.83142 0.93015 1.39676 0.93052 1.42866 1.02245 1.04220 1.89849 1.21160 0.91067 0.87902 0.97625 1.21961 0.94016 0.99735 0.82251 0.92520 1.22692 0.96539 0.95413 1.00698 1.22844 0.96534 1.03941 0.92108 1.22963 0.91826 0.89727 0.99142 1.48502 1.46142 1.28799 1.10059 1.20680 0.80585 0.80390 0.87889 1.90731 1.34268 1.43455 1.73980 1.20581 0.83253 0.95494 0.89435 1.19787 0.96056 0.95882 0.99147 1.21160 0.95039 1.00365 0.97832 1.21365 1.00158 0.94544 0.99065 1.21548 0.96524 0.95839 0.99537 1.21535 0.95044 1.00546 0.97011 1.21335 1.00724 0.91740 0.97971 1.23195 1.00057 0.92435 1.02682 1.23272 0.92590 0.99573 1.03265 1.23692 0.96529 0.83066 0.99543 1.88338 1.16107 1.40025 1.83315 0.93606 0.79337 0.97264 0.94712 0.88164 0.89702 0.86678 0.89846 0.91567 0.87140 0.87479 0.84968 0.83362 0.82703 0.83650 0.88369 0.91289 0.91617 0.87032 0.87079 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -68.86 13.97 21.65 0.30 -68.56 16 2 C -0.06 -3.89 5.50 84.86 0.47 -3.43 16 3 Si 0.96 54.97 27.39 68.60 1.88 56.85 16 4 H -0.29 -16.74 7.11 99.48 0.71 -16.03 16 5 H -0.30 -16.33 7.11 99.48 0.71 -15.62 16 6 H -0.27 -14.85 6.52 99.48 0.65 -14.20 16 7 C -0.22 -14.10 10.47 84.03 0.88 -13.22 16 8 H 0.05 3.58 8.06 -2.91 -0.02 3.55 16 9 N -0.74 -41.11 3.94 -343.45 -1.35 -42.47 16 10 C 0.15 6.58 5.60 86.38 0.48 7.06 16 11 C 0.12 4.15 3.06 45.34 0.14 4.28 16 12 H 0.06 2.07 7.98 -2.39 -0.02 2.05 16 13 C -0.12 -2.42 6.40 31.89 0.20 -2.21 16 14 C -0.12 -1.80 7.11 32.09 0.23 -1.57 16 15 C 0.08 1.82 4.96 86.86 0.43 2.25 16 16 N -0.60 -19.39 3.05 -788.06 -2.41 -21.80 16 17 C 0.52 19.71 6.60 87.66 0.58 20.29 16 18 O -0.55 -26.71 11.93 -3.04 -0.04 -26.74 16 19 C 0.16 4.61 0.71 -11.82 -0.01 4.60 16 20 C -0.11 -3.19 4.79 -19.86 -0.10 -3.29 16 21 C -0.13 -4.00 8.75 22.27 0.19 -3.80 16 22 C -0.13 -3.63 10.05 22.27 0.22 -3.41 16 23 C -0.12 -2.60 10.05 22.27 0.22 -2.37 16 24 C -0.12 -2.57 10.05 22.27 0.22 -2.35 16 25 C -0.10 -2.40 8.21 22.27 0.18 -2.22 16 26 C -0.15 -4.16 4.98 31.86 0.16 -4.01 16 27 C -0.15 -3.08 7.16 32.05 0.23 -2.85 16 28 C 0.05 0.79 7.78 72.65 0.56 1.35 16 29 O -0.36 -8.14 6.61 -148.98 -0.98 -9.12 16 30 H 0.26 16.98 8.31 -92.71 -0.77 16.20 16 31 H 0.37 20.76 3.56 -92.71 -0.33 20.43 16 32 H 0.01 0.44 8.12 -2.39 -0.02 0.42 16 33 H 0.04 1.47 8.01 -2.39 -0.02 1.45 16 34 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.08 1.72 7.85 -2.39 -0.02 1.70 16 36 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.07 1.39 6.80 -2.39 -0.02 1.38 16 39 H 0.11 2.17 4.86 -2.38 -0.01 2.16 16 40 H 0.11 3.67 6.85 -2.91 -0.02 3.65 16 41 H 0.13 3.19 8.06 -2.91 -0.02 3.16 16 42 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 43 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 44 H 0.15 2.90 5.19 -2.91 -0.02 2.89 16 45 H 0.10 2.48 6.89 -2.38 -0.02 2.46 16 46 H 0.07 2.53 6.72 -2.39 -0.02 2.52 16 47 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -87.77 380.23 3.27 -84.50 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: 0.56 Total: 32.23 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 5.31 Total: -4.88 kcal Atomic # 7 Polarization: -129.37 SS G_CDS: -3.46 Total: -132.82 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -1.02 Total: -35.87 kcal Atomic # 14 Polarization: 54.97 SS G_CDS: 1.88 Total: 56.85 kcal Total: -87.77 3.27 -84.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277990828.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.682 kcal (2) G-P(sol) polarization free energy of solvation -87.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds