Wall clock time and date at job start Wed Apr 1 2020 03:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00091 * 2 1 4 4 H 1.48493 * 109.47067 * 239.99490 * 3 2 1 5 5 H 1.48503 * 109.47304 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47103 * 119.99487 * 3 2 1 7 7 C 1.38810 * 119.99615 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99790 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00454 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00056 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46852 * 187.27788 * 10 9 7 12 12 H 1.08999 * 109.99573 * 318.77515 * 11 10 9 13 13 C 1.54327 * 109.88169 * 197.67648 * 11 10 9 14 14 C 1.55154 * 102.93875 * 218.39040 * 13 11 10 15 15 C 1.54910 * 101.62385 * 35.48466 * 14 13 11 16 16 N 1.47024 * 109.88344 * 79.86751 * 11 10 9 17 17 C 1.34773 * 125.64987 * 298.32123 * 16 11 10 18 18 O 1.21283 * 119.99969 * 3.15443 * 17 16 11 19 19 C 1.50700 * 120.00376 * 183.15791 * 17 16 11 20 20 C 1.50704 * 109.87110 * 279.88436 * 19 17 16 21 21 C 1.38227 * 119.99953 * 269.02406 * 20 19 17 22 22 C 1.38241 * 120.00163 * 179.76506 * 21 20 19 23 23 C 1.38235 * 119.99386 * 0.48435 * 22 21 20 24 24 C 1.38227 * 120.00146 * 359.78985 * 23 22 21 25 25 C 1.38231 * 119.99847 * 89.29530 * 20 19 17 26 26 C 1.54094 * 109.88151 * 158.87385 * 19 17 16 27 27 C 1.54811 * 104.19040 * 242.60609 * 26 19 17 28 28 C 1.54998 * 102.09042 * 20.88255 * 27 26 19 29 29 O 1.43748 * 109.87535 * 41.04239 * 19 17 16 30 30 H 0.97001 * 119.99849 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99838 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47611 * 67.27633 * 10 9 7 33 33 H 1.09005 * 109.47087 * 307.27513 * 10 9 7 34 34 H 1.08995 * 110.71761 * 100.02863 * 13 11 10 35 35 H 1.09003 * 110.71675 * 336.75160 * 13 11 10 36 36 H 1.09003 * 111.00095 * 153.57703 * 14 13 11 37 37 H 1.08996 * 111.00616 * 277.38562 * 14 13 11 38 38 H 1.09001 * 110.36574 * 81.83792 * 15 14 13 39 39 H 1.08994 * 110.36915 * 204.17013 * 15 14 13 40 40 H 1.08007 * 119.99758 * 359.97438 * 21 20 19 41 41 H 1.07995 * 119.99731 * 180.25372 * 22 21 20 42 42 H 1.08002 * 119.99250 * 179.77207 * 23 22 21 43 43 H 1.08005 * 119.99977 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.00577 * 359.97438 * 25 20 19 45 45 H 1.08999 * 110.48828 * 1.28495 * 26 19 17 46 46 H 1.08998 * 110.48632 * 123.93376 * 26 19 17 47 47 H 1.08998 * 110.91097 * 139.07713 * 27 26 19 48 48 H 1.09000 * 110.90884 * 262.65088 * 27 26 19 49 49 H 1.09002 * 110.62082 * 81.47265 * 28 27 26 50 50 H 1.08995 * 110.62065 * 204.31867 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0737 -4.8139 -0.1822 12 1 0.1762 -4.6368 0.4103 13 6 1.7355 -6.1392 0.2506 14 6 1.2042 -7.1516 -0.7982 15 6 1.1464 -6.2767 -2.0752 16 7 0.7171 -4.9475 -1.6023 17 6 0.0987 -4.0108 -2.3483 18 8 -0.1604 -2.9273 -1.8687 19 6 -0.2711 -4.3096 -3.7783 20 6 0.9380 -4.1512 -4.6639 21 6 1.2060 -2.9312 -5.2559 22 6 2.3178 -2.7846 -6.0643 23 6 3.1559 -3.8607 -6.2887 24 6 2.8847 -5.0822 -5.7012 25 6 1.7758 -5.2274 -4.8886 26 6 -1.3884 -3.3546 -4.2412 27 6 -2.5804 -4.2903 -4.5579 28 6 -2.2189 -5.5619 -3.7486 29 8 -0.7837 -5.6486 -3.8810 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.5835 -3.7730 0.9484 33 1 2.7787 -3.6602 -0.8173 34 1 1.4160 -6.4200 1.2541 35 1 2.8216 -6.0632 0.1976 36 1 1.8978 -7.9828 -0.9251 37 1 0.2120 -7.5116 -0.5260 38 1 2.1317 -6.2145 -2.5373 39 1 0.4207 -6.6819 -2.7802 40 1 0.5486 -2.0916 -5.0841 41 1 2.5293 -1.8303 -6.5235 42 1 4.0224 -3.7471 -6.9232 43 1 3.5393 -5.9231 -5.8768 44 1 1.5643 -6.1817 -4.4293 45 1 -1.6505 -2.6592 -3.4439 46 1 -1.0808 -2.8127 -5.1356 47 1 -3.5176 -3.8590 -4.2063 48 1 -2.6308 -4.5087 -5.6245 49 1 -2.5013 -5.4443 -2.7024 50 1 -2.7001 -6.4402 -4.1785 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277990830.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:26 Heat of formation + Delta-G solvation = -9.658618 kcal Electronic energy + Delta-G solvation = -32823.423791 eV Core-core repulsion = 28816.895571 eV Total energy + Delta-G solvation = -4006.528220 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.93998 -38.92308 -38.29663 -36.77209 -34.16305 -32.51951 -32.24120 -31.15533 -30.89406 -30.68510 -28.59521 -27.98061 -24.98115 -24.22663 -22.92448 -22.72397 -22.08938 -21.39759 -21.00990 -20.14088 -18.59225 -17.64209 -17.09920 -16.51661 -16.35143 -15.84460 -15.53415 -14.85195 -14.69552 -14.62398 -14.36930 -13.83033 -13.72459 -13.47578 -13.32585 -13.15608 -13.00303 -12.86945 -12.77891 -12.51459 -12.30010 -11.94584 -11.81457 -11.56690 -11.45468 -11.24725 -11.11217 -11.02896 -10.80020 -10.76065 -10.65515 -10.63106 -10.51700 -10.40181 -10.25625 -9.85189 -9.44264 -9.04766 -8.78548 -8.63072 -8.42940 -7.99605 -6.54849 -5.45361 -2.71172 1.38173 1.52386 3.19064 3.40413 3.56816 3.60337 3.61713 3.66272 3.90765 4.53551 4.69167 4.72054 4.75772 4.83316 4.95337 5.02433 5.02860 5.09167 5.11714 5.17123 5.24051 5.40260 5.51665 5.54514 5.58546 5.62668 5.70319 5.71616 5.81594 5.82917 5.86773 5.95873 5.96532 6.01543 6.10082 6.11434 6.13548 6.19813 6.23179 6.33267 6.49938 6.57253 6.59749 6.61257 6.65772 6.83762 6.92049 7.07427 7.11951 7.90324 8.09654 8.68770 8.87534 9.84543 10.49708 10.87744 11.76224 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008930 B = 0.005029 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3134.636884 B = 5566.369742 C = 6340.749032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.896 3.104 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.289 1.289 7 C -0.231 4.231 8 H 0.060 0.940 9 N -0.715 5.715 10 C 0.148 3.852 11 C 0.129 3.871 12 H 0.072 0.928 13 C -0.124 4.124 14 C -0.133 4.133 15 C 0.089 3.911 16 N -0.603 5.603 17 C 0.506 3.494 18 O -0.454 6.454 19 C 0.141 3.859 20 C -0.075 4.075 21 C -0.098 4.098 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.127 4.127 25 C -0.097 4.097 26 C -0.145 4.145 27 C -0.151 4.151 28 C 0.044 3.956 29 O -0.356 6.356 30 H 0.249 0.751 31 H 0.395 0.605 32 H 0.016 0.984 33 H 0.018 0.982 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.129 0.871 45 H 0.106 0.894 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.063 0.937 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.080 -17.679 -11.946 21.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.207 4.207 3 Si 0.728 3.272 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.363 4.363 8 H 0.078 0.922 9 N -0.363 5.363 10 C 0.019 3.981 11 C 0.026 3.974 12 H 0.090 0.910 13 C -0.163 4.163 14 C -0.171 4.171 15 C -0.034 4.034 16 N -0.340 5.340 17 C 0.290 3.710 18 O -0.324 6.324 19 C 0.098 3.902 20 C -0.075 4.075 21 C -0.116 4.116 22 C -0.138 4.138 23 C -0.136 4.136 24 C -0.145 4.145 25 C -0.115 4.115 26 C -0.182 4.182 27 C -0.189 4.189 28 C -0.033 4.033 29 O -0.275 6.275 30 H 0.059 0.941 31 H 0.233 0.767 32 H 0.033 0.967 33 H 0.036 0.964 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.147 0.853 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.147 0.853 45 H 0.124 0.876 46 H 0.105 0.895 47 H 0.101 0.899 48 H 0.094 0.906 49 H 0.081 0.919 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.063 -17.038 -11.753 20.726 hybrid contribution 0.332 1.143 -0.007 1.190 sum -0.731 -15.895 -11.760 19.786 Atomic orbital electron populations 1.69715 1.04750 1.24631 1.57792 1.24627 0.95333 0.96945 1.03763 0.86439 0.78565 0.84627 0.77577 1.21737 1.21889 1.21630 1.19085 0.90429 0.84679 1.42069 0.92230 1.42523 1.06515 0.98878 1.88335 1.20967 0.93275 0.86625 0.97282 1.21890 0.98377 0.95383 0.81759 0.91018 1.22630 1.00900 0.93721 0.99028 1.22766 1.01603 0.97453 0.95262 1.22688 1.00290 0.83232 0.97146 1.48294 1.59298 1.15532 1.10877 1.20258 0.79430 0.84413 0.86858 1.90991 1.50461 1.20503 1.70396 1.20953 0.93401 0.83922 0.91935 1.19391 0.95731 0.94645 0.97752 1.21136 0.97745 0.96824 0.95900 1.21103 0.94830 0.98836 0.99018 1.21147 0.99280 0.93272 0.99912 1.21087 0.97568 0.97595 0.98256 1.21105 0.93921 0.98754 0.97737 1.23128 0.92867 0.98317 1.03906 1.23114 0.99036 0.95783 1.00929 1.23603 0.81240 0.98578 0.99849 1.88806 1.20228 1.24872 1.93592 0.94137 0.76679 0.96685 0.96425 0.90364 0.90561 0.90448 0.90963 0.92320 0.88397 0.85273 0.85915 0.86275 0.86155 0.85285 0.87553 0.89459 0.89916 0.90588 0.91916 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.81 13.06 55.49 0.72 -29.09 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.90 23.98 29.55 -169.99 -5.02 18.95 16 4 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 5 H -0.29 -7.83 7.11 56.52 0.40 -7.42 16 6 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 7 C -0.23 -7.05 9.99 -15.06 -0.15 -7.20 16 8 H 0.06 1.78 7.83 -52.48 -0.41 1.37 16 9 N -0.71 -19.99 4.11 -59.91 -0.25 -20.24 16 10 C 0.15 3.32 5.60 -4.04 -0.02 3.30 16 11 C 0.13 2.33 3.06 -66.95 -0.20 2.13 16 12 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 13 C -0.12 -1.61 6.41 -24.90 -0.16 -1.77 16 14 C -0.13 -1.43 7.08 -24.58 -0.17 -1.61 16 15 C 0.09 1.17 4.93 -2.50 -0.01 1.16 16 16 N -0.60 -10.45 3.06 -162.97 -0.50 -10.95 16 17 C 0.51 9.92 6.53 -10.99 -0.07 9.85 16 18 O -0.45 -11.26 12.06 5.56 0.07 -11.20 16 19 C 0.14 2.21 0.63 -92.35 -0.06 2.15 16 20 C -0.07 -1.16 4.83 -104.63 -0.51 -1.67 16 21 C -0.10 -1.53 8.73 -39.58 -0.35 -1.88 16 22 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 23 C -0.12 -1.45 10.05 -39.59 -0.40 -1.85 16 24 C -0.13 -1.55 10.05 -39.59 -0.40 -1.95 16 25 C -0.10 -1.33 8.12 -39.58 -0.32 -1.65 16 26 C -0.14 -2.14 5.64 -25.21 -0.14 -2.28 16 27 C -0.15 -1.70 7.15 -24.72 -0.18 -1.88 16 28 C 0.04 0.49 7.66 38.21 0.29 0.78 16 29 O -0.36 -4.76 6.93 -35.23 -0.24 -5.00 16 30 H 0.25 7.81 8.31 -40.82 -0.34 7.47 16 31 H 0.39 11.81 5.55 -40.82 -0.23 11.59 16 32 H 0.02 0.34 8.03 -51.93 -0.42 -0.07 16 33 H 0.02 0.42 8.13 -51.93 -0.42 0.00 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.96 7.85 -51.93 -0.41 0.55 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.77 6.85 -51.93 -0.36 0.41 16 39 H 0.10 1.22 4.78 -51.93 -0.25 0.97 16 40 H 0.13 2.05 6.43 -52.48 -0.34 1.72 16 41 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 43 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 44 H 0.13 1.59 5.14 -52.49 -0.27 1.32 16 45 H 0.11 1.90 6.64 -51.93 -0.34 1.56 16 46 H 0.09 1.20 5.76 -51.93 -0.30 0.90 16 47 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 382.61 15.07 5.77 5.77 Total: -1.00 -36.40 382.61 -10.32 -46.72 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -7.52 Total: 11.88 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -3.34 Total: -6.83 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -0.02 Total: -60.28 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.18 Total: -16.20 kcal Atomic # 14 Polarization: 23.98 SS G_CDS: -5.02 Total: 18.95 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.40 -10.32 -46.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277990830.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.058 kcal (2) G-P(sol) polarization free energy of solvation -36.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds