Wall clock time and date at job start Wed Apr 1 2020 03:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00091 * 2 1 4 4 H 1.48493 * 109.47067 * 239.99490 * 3 2 1 5 5 H 1.48503 * 109.47304 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47103 * 119.99487 * 3 2 1 7 7 C 1.38810 * 119.99615 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99790 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00454 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00056 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46852 * 187.27788 * 10 9 7 12 12 H 1.08999 * 109.99573 * 318.77515 * 11 10 9 13 13 C 1.54327 * 109.88169 * 197.67648 * 11 10 9 14 14 C 1.55154 * 102.93875 * 218.39040 * 13 11 10 15 15 C 1.54910 * 101.62385 * 35.48466 * 14 13 11 16 16 N 1.47024 * 109.88344 * 79.86751 * 11 10 9 17 17 C 1.34773 * 125.64987 * 298.32123 * 16 11 10 18 18 O 1.21283 * 119.99969 * 3.15443 * 17 16 11 19 19 C 1.50700 * 120.00376 * 183.15791 * 17 16 11 20 20 C 1.50704 * 109.87110 * 279.88436 * 19 17 16 21 21 C 1.38227 * 119.99953 * 269.02406 * 20 19 17 22 22 C 1.38241 * 120.00163 * 179.76506 * 21 20 19 23 23 C 1.38235 * 119.99386 * 0.48435 * 22 21 20 24 24 C 1.38227 * 120.00146 * 359.78985 * 23 22 21 25 25 C 1.38231 * 119.99847 * 89.29530 * 20 19 17 26 26 C 1.54094 * 109.88151 * 158.87385 * 19 17 16 27 27 C 1.54811 * 104.19040 * 242.60609 * 26 19 17 28 28 C 1.54998 * 102.09042 * 20.88255 * 27 26 19 29 29 O 1.43748 * 109.87535 * 41.04239 * 19 17 16 30 30 H 0.97001 * 119.99849 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99838 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47611 * 67.27633 * 10 9 7 33 33 H 1.09005 * 109.47087 * 307.27513 * 10 9 7 34 34 H 1.08995 * 110.71761 * 100.02863 * 13 11 10 35 35 H 1.09003 * 110.71675 * 336.75160 * 13 11 10 36 36 H 1.09003 * 111.00095 * 153.57703 * 14 13 11 37 37 H 1.08996 * 111.00616 * 277.38562 * 14 13 11 38 38 H 1.09001 * 110.36574 * 81.83792 * 15 14 13 39 39 H 1.08994 * 110.36915 * 204.17013 * 15 14 13 40 40 H 1.08007 * 119.99758 * 359.97438 * 21 20 19 41 41 H 1.07995 * 119.99731 * 180.25372 * 22 21 20 42 42 H 1.08002 * 119.99250 * 179.77207 * 23 22 21 43 43 H 1.08005 * 119.99977 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.00577 * 359.97438 * 25 20 19 45 45 H 1.08999 * 110.48828 * 1.28495 * 26 19 17 46 46 H 1.08998 * 110.48632 * 123.93376 * 26 19 17 47 47 H 1.08998 * 110.91097 * 139.07713 * 27 26 19 48 48 H 1.09000 * 110.90884 * 262.65088 * 27 26 19 49 49 H 1.09002 * 110.62082 * 81.47265 * 28 27 26 50 50 H 1.08995 * 110.62065 * 204.31867 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0737 -4.8139 -0.1822 12 1 0.1762 -4.6368 0.4103 13 6 1.7355 -6.1392 0.2506 14 6 1.2042 -7.1516 -0.7982 15 6 1.1464 -6.2767 -2.0752 16 7 0.7171 -4.9475 -1.6023 17 6 0.0987 -4.0108 -2.3483 18 8 -0.1604 -2.9273 -1.8687 19 6 -0.2711 -4.3096 -3.7783 20 6 0.9380 -4.1512 -4.6639 21 6 1.2060 -2.9312 -5.2559 22 6 2.3178 -2.7846 -6.0643 23 6 3.1559 -3.8607 -6.2887 24 6 2.8847 -5.0822 -5.7012 25 6 1.7758 -5.2274 -4.8886 26 6 -1.3884 -3.3546 -4.2412 27 6 -2.5804 -4.2903 -4.5579 28 6 -2.2189 -5.5619 -3.7486 29 8 -0.7837 -5.6486 -3.8810 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.5835 -3.7730 0.9484 33 1 2.7787 -3.6602 -0.8173 34 1 1.4160 -6.4200 1.2541 35 1 2.8216 -6.0632 0.1976 36 1 1.8978 -7.9828 -0.9251 37 1 0.2120 -7.5116 -0.5260 38 1 2.1317 -6.2145 -2.5373 39 1 0.4207 -6.6819 -2.7802 40 1 0.5486 -2.0916 -5.0841 41 1 2.5293 -1.8303 -6.5235 42 1 4.0224 -3.7471 -6.9232 43 1 3.5393 -5.9231 -5.8768 44 1 1.5643 -6.1817 -4.4293 45 1 -1.6505 -2.6592 -3.4439 46 1 -1.0808 -2.8127 -5.1356 47 1 -3.5176 -3.8590 -4.2063 48 1 -2.6308 -4.5087 -5.6245 49 1 -2.5013 -5.4443 -2.7024 50 1 -2.7001 -6.4402 -4.1785 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277990830.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:25 Heat of formation + Delta-G solvation = -32.937664 kcal Electronic energy + Delta-G solvation = -32824.433246 eV Core-core repulsion = 28816.895571 eV Total energy + Delta-G solvation = -4007.537675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.16378 -40.17895 -39.35265 -38.21688 -36.21779 -33.62646 -33.56463 -33.02024 -32.08094 -31.73422 -30.28336 -29.06209 -26.69894 -25.59387 -24.40907 -23.86739 -23.49812 -22.64860 -22.07110 -21.37209 -19.99518 -19.18025 -18.63566 -17.93158 -17.64886 -17.01465 -16.74919 -16.53175 -16.13037 -15.70589 -15.68418 -15.27320 -15.06003 -14.94675 -14.80003 -14.67566 -14.21009 -14.13972 -14.01181 -13.69636 -13.64168 -13.22801 -13.12992 -12.96180 -12.93861 -12.82852 -12.67151 -12.32217 -12.28565 -12.17779 -11.99007 -11.85170 -11.78206 -11.73971 -11.60453 -11.49372 -11.37480 -10.91079 -10.35311 -9.84310 -9.63975 -9.46294 -8.81342 -7.83108 -5.09845 0.30870 0.46928 1.38440 1.43582 1.49347 1.75884 2.08478 2.55990 2.57058 2.83474 3.43791 3.47514 3.53872 3.61541 3.72898 3.81695 3.97284 4.00475 4.04332 4.07538 4.12857 4.25157 4.33118 4.33731 4.40832 4.42887 4.55572 4.63476 4.66336 4.71414 4.77948 4.80676 4.86971 4.89195 4.90610 4.97783 5.01750 5.04807 5.09798 5.12820 5.15678 5.17687 5.40148 5.45210 5.46506 5.54777 5.57366 5.61819 5.78236 6.06188 6.34279 6.71303 7.34085 7.47748 8.28392 8.53171 9.39023 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008930 B = 0.005029 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3134.636884 B = 5566.369742 C = 6340.749032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.073 4.073 3 Si 0.966 3.034 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.243 4.243 8 H 0.061 0.939 9 N -0.727 5.727 10 C 0.148 3.852 11 C 0.128 3.872 12 H 0.047 0.953 13 C -0.115 4.115 14 C -0.117 4.117 15 C 0.083 3.917 16 N -0.603 5.603 17 C 0.495 3.505 18 O -0.522 6.522 19 C 0.153 3.847 20 C -0.095 4.095 21 C -0.127 4.127 22 C -0.131 4.131 23 C -0.116 4.116 24 C -0.123 4.123 25 C -0.102 4.102 26 C -0.150 4.150 27 C -0.142 4.142 28 C 0.040 3.960 29 O -0.349 6.349 30 H 0.244 0.756 31 H 0.382 0.618 32 H 0.024 0.976 33 H 0.003 0.997 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.135 0.865 42 H 0.151 0.849 43 H 0.156 0.844 44 H 0.144 0.856 45 H 0.063 0.937 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.098 0.902 49 H 0.048 0.952 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.698 -20.988 -13.285 24.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.266 4.266 3 Si 0.796 3.204 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.375 4.375 8 H 0.079 0.921 9 N -0.372 5.372 10 C 0.020 3.980 11 C 0.024 3.976 12 H 0.065 0.935 13 C -0.153 4.153 14 C -0.155 4.155 15 C -0.038 4.038 16 N -0.338 5.338 17 C 0.281 3.719 18 O -0.396 6.396 19 C 0.110 3.890 20 C -0.096 4.096 21 C -0.146 4.146 22 C -0.149 4.149 23 C -0.134 4.134 24 C -0.140 4.140 25 C -0.120 4.120 26 C -0.188 4.188 27 C -0.179 4.179 28 C -0.036 4.036 29 O -0.268 6.268 30 H 0.053 0.947 31 H 0.218 0.782 32 H 0.042 0.958 33 H 0.021 0.979 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.133 0.867 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.153 0.847 42 H 0.169 0.831 43 H 0.174 0.826 44 H 0.162 0.838 45 H 0.082 0.918 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.117 0.883 49 H 0.067 0.933 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.761 -20.430 -13.096 24.279 hybrid contribution -0.179 2.121 0.394 2.165 sum 0.582 -18.309 -12.702 22.291 Atomic orbital electron populations 1.69926 1.06434 1.25027 1.59188 1.25487 0.96291 1.00590 1.04191 0.85326 0.77275 0.79859 0.77979 1.21152 1.21914 1.20116 1.19477 0.90667 0.86136 1.41267 0.92117 1.42707 1.06145 1.00164 1.88217 1.21130 0.93824 0.86355 0.96726 1.21871 0.96620 0.96574 0.82512 0.93487 1.22629 1.00947 0.90997 1.00717 1.22792 1.03078 0.97215 0.92402 1.22980 1.00683 0.81320 0.98812 1.48471 1.58060 1.16799 1.10489 1.21075 0.78582 0.83844 0.88365 1.90954 1.53249 1.23327 1.72078 1.20639 0.93965 0.84963 0.89428 1.19477 0.96340 0.95351 0.98384 1.21181 0.98897 0.96691 0.97800 1.21361 0.94498 1.00296 0.98767 1.21552 0.99554 0.92683 0.99614 1.21532 0.97111 0.98619 0.96754 1.21341 0.94026 0.98599 0.98032 1.23073 0.94741 0.98515 1.02428 1.23126 0.97635 0.94797 1.02342 1.23820 0.80245 1.00077 0.99438 1.88779 1.21462 1.23283 1.93298 0.94744 0.78170 0.95797 0.97939 0.88476 0.89748 0.86672 0.90027 0.91718 0.87330 0.87427 0.84699 0.83117 0.82597 0.83815 0.91816 0.89200 0.89134 0.88325 0.93331 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -65.08 13.06 21.65 0.28 -64.80 16 2 C -0.07 -4.68 5.50 84.86 0.47 -4.22 16 3 Si 0.97 50.94 29.55 68.60 2.03 52.96 16 4 H -0.28 -14.63 7.11 99.48 0.71 -13.92 16 5 H -0.29 -15.32 7.11 99.48 0.71 -14.62 16 6 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.24 -15.45 9.99 84.03 0.84 -14.61 16 8 H 0.06 3.74 7.83 -2.91 -0.02 3.71 16 9 N -0.73 -42.84 4.11 -343.45 -1.41 -44.25 16 10 C 0.15 6.86 5.60 86.38 0.48 7.35 16 11 C 0.13 4.70 3.06 45.34 0.14 4.84 16 12 H 0.05 1.95 8.03 -2.39 -0.02 1.93 16 13 C -0.11 -2.70 6.41 31.78 0.20 -2.49 16 14 C -0.12 -2.08 7.08 31.99 0.23 -1.85 16 15 C 0.08 1.99 4.93 86.85 0.43 2.42 16 16 N -0.60 -21.20 3.06 -787.92 -2.41 -23.61 16 17 C 0.50 20.55 6.53 87.66 0.57 21.13 16 18 O -0.52 -28.25 12.06 -3.04 -0.04 -28.29 16 19 C 0.15 4.99 0.63 -11.91 -0.01 4.98 16 20 C -0.09 -2.99 4.83 -19.87 -0.10 -3.09 16 21 C -0.13 -4.20 8.73 22.27 0.19 -4.00 16 22 C -0.13 -3.58 10.05 22.27 0.22 -3.36 16 23 C -0.12 -2.58 10.05 22.27 0.22 -2.35 16 24 C -0.12 -2.61 10.05 22.27 0.22 -2.38 16 25 C -0.10 -2.60 8.12 22.27 0.18 -2.42 16 26 C -0.15 -4.81 5.64 31.58 0.18 -4.63 16 27 C -0.14 -3.16 7.15 31.90 0.23 -2.93 16 28 C 0.04 0.85 7.66 72.67 0.56 1.41 16 29 O -0.35 -8.95 6.93 -148.98 -1.03 -9.99 16 30 H 0.24 16.07 8.31 -92.71 -0.77 15.30 16 31 H 0.38 24.49 5.55 -92.71 -0.51 23.98 16 32 H 0.02 1.08 8.03 -2.39 -0.02 1.06 16 33 H 0.00 0.13 8.13 -2.38 -0.02 0.11 16 34 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.08 1.88 7.85 -2.39 -0.02 1.86 16 36 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.06 1.50 6.85 -2.39 -0.02 1.48 16 39 H 0.11 2.40 4.78 -2.39 -0.01 2.39 16 40 H 0.11 3.85 6.43 -2.91 -0.02 3.84 16 41 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 42 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 43 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 44 H 0.14 3.12 5.14 -2.91 -0.01 3.11 16 45 H 0.06 2.59 6.64 -2.39 -0.02 2.57 16 46 H 0.09 2.74 5.76 -2.39 -0.01 2.73 16 47 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -86.04 382.61 3.12 -82.92 By element: Atomic # 1 Polarization: 40.83 SS G_CDS: 0.44 Total: 41.27 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 5.27 Total: -6.21 kcal Atomic # 7 Polarization: -129.12 SS G_CDS: -3.54 Total: -132.66 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -1.07 Total: -38.27 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 2.03 Total: 52.96 kcal Total: -86.04 3.12 -82.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277990830.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.980 kcal (2) G-P(sol) polarization free energy of solvation -86.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds