Wall clock time and date at job start Wed Apr 1 2020 03:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 120.00429 * 2 1 4 4 H 1.48491 * 109.47290 * 270.00074 * 3 2 1 5 5 H 1.48504 * 109.47096 * 29.99754 * 3 2 1 6 6 H 1.48504 * 109.47271 * 149.99703 * 3 2 1 7 7 C 1.38816 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00360 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99722 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99599 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46773 * 172.39707 * 10 9 7 12 12 H 1.08997 * 109.99582 * 47.60864 * 11 10 9 13 13 C 1.54326 * 109.88096 * 168.70785 * 11 10 9 14 14 C 1.55157 * 102.94340 * 141.60941 * 13 11 10 15 15 C 1.54914 * 101.57997 * 324.50151 * 14 13 11 16 16 N 1.47019 * 109.88113 * 286.51262 * 11 10 9 17 17 C 1.34777 * 125.64678 * 61.62551 * 16 11 10 18 18 O 1.21281 * 120.00285 * 5.03406 * 17 16 11 19 19 C 1.50698 * 119.99968 * 185.03321 * 17 16 11 20 20 C 1.50696 * 109.87166 * 277.42605 * 19 17 16 21 21 C 1.38234 * 120.00421 * 280.29744 * 20 19 17 22 22 C 1.38242 * 119.99973 * 179.78876 * 21 20 19 23 23 C 1.38236 * 119.99752 * 0.46105 * 22 21 20 24 24 C 1.38233 * 120.00045 * 359.76414 * 23 22 21 25 25 C 1.38231 * 120.00365 * 0.02809 * 24 23 22 26 26 C 1.54112 * 109.87771 * 156.26909 * 19 17 16 27 27 C 1.54816 * 104.18529 * 242.60418 * 26 19 17 28 28 C 1.54990 * 102.09263 * 20.88273 * 27 26 19 29 29 O 1.43741 * 109.87945 * 38.44127 * 19 17 16 30 30 H 0.97000 * 119.99573 * 359.97438 * 1 2 3 31 31 H 0.96994 * 119.99633 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47209 * 52.39623 * 10 9 7 33 33 H 1.09001 * 109.47603 * 292.39640 * 10 9 7 34 34 H 1.09000 * 110.71732 * 259.97441 * 13 11 10 35 35 H 1.08996 * 110.71959 * 23.24580 * 13 11 10 36 36 H 1.09000 * 111.00488 * 82.56518 * 14 13 11 37 37 H 1.08989 * 111.00817 * 206.42266 * 14 13 11 38 38 H 1.08999 * 110.37021 * 155.85032 * 15 14 13 39 39 H 1.09007 * 110.36448 * 278.05552 * 15 14 13 40 40 H 1.08001 * 119.99867 * 359.97438 * 21 20 19 41 41 H 1.07994 * 119.99974 * 180.25270 * 22 21 20 42 42 H 1.07996 * 119.99807 * 179.79689 * 23 22 21 43 43 H 1.08007 * 119.99510 * 180.02562 * 24 23 22 44 44 H 1.07994 * 120.00170 * 179.97438 * 25 24 23 45 45 H 1.09000 * 110.48849 * 1.28123 * 26 19 17 46 46 H 1.08996 * 110.48401 * 123.92970 * 26 19 17 47 47 H 1.09002 * 110.90764 * 262.68197 * 27 26 19 48 48 H 1.08998 * 110.93079 * 139.09239 * 27 26 19 49 49 H 1.09003 * 110.62082 * 204.47650 * 28 27 26 50 50 H 1.09000 * 110.75568 * 81.53561 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0747 -4.8135 0.1894 12 1 0.2249 -4.6952 -0.4827 13 6 1.7827 -6.1558 -0.0907 14 6 1.1812 -7.0973 0.9859 15 6 1.0142 -6.1314 2.1855 16 7 0.6087 -4.8484 1.5834 17 6 -0.0757 -3.8693 2.2075 18 8 -0.4360 -2.8911 1.5876 19 6 -0.3934 -3.9901 3.6756 20 6 -1.6250 -4.8377 3.8652 21 6 -2.8787 -4.2878 3.6738 22 6 -4.0082 -5.0666 3.8434 23 6 -3.8842 -6.3926 4.2138 24 6 -2.6306 -6.9412 4.4098 25 6 -1.5010 -6.1637 4.2360 26 6 -0.6188 -2.5904 4.2799 27 6 0.5058 -2.4467 5.3341 28 6 1.5396 -3.4957 4.8512 29 8 0.7182 -4.5810 4.3693 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 2.7833 -3.6583 0.8119 33 1 2.5780 -3.7753 -0.9523 34 1 1.5464 -6.5147 -1.0924 35 1 2.8603 -6.0583 0.0410 36 1 0.2171 -7.4920 0.6652 37 1 1.8713 -7.9053 1.2280 38 1 0.2398 -6.4953 2.8607 39 1 1.9591 -6.0207 2.7178 40 1 -2.9757 -3.2507 3.3887 41 1 -4.9876 -4.6381 3.6899 42 1 -4.7667 -7.0001 4.3496 43 1 -2.5338 -7.9773 4.6989 44 1 -0.5217 -6.5921 4.3895 45 1 -0.5219 -1.8231 3.5117 46 1 -1.5976 -2.5336 4.7560 47 1 0.1386 -2.6926 6.3306 48 1 0.9316 -1.4436 5.3150 49 1 2.1660 -3.8269 5.6794 50 1 2.1525 -3.0915 4.0456 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277990832.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:28 Heat of formation + Delta-G solvation = -34.131227 kcal Electronic energy + Delta-G solvation = -32856.897840 eV Core-core repulsion = 28849.308409 eV Total energy + Delta-G solvation = -4007.589432 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.14478 -40.19814 -39.34636 -38.21631 -36.20726 -33.60985 -33.49779 -33.01031 -32.11762 -31.73407 -30.28950 -29.08834 -26.68452 -25.55745 -24.40750 -23.87055 -23.50841 -22.58682 -22.13665 -21.36264 -19.91253 -19.21490 -18.65189 -17.87570 -17.50764 -17.27934 -16.72236 -16.56062 -16.15893 -15.69601 -15.58447 -15.23972 -15.07071 -14.88130 -14.81560 -14.68678 -14.21945 -14.12930 -13.89825 -13.62180 -13.60535 -13.47101 -13.10921 -12.94692 -12.91894 -12.78125 -12.68109 -12.30912 -12.29025 -12.22964 -12.03879 -11.90148 -11.78564 -11.73437 -11.59171 -11.50483 -11.40459 -10.91647 -10.39300 -9.82710 -9.61577 -9.43312 -8.81809 -7.81050 -5.09992 0.32804 0.47973 1.39509 1.43160 1.50897 1.74873 2.10704 2.56187 2.57593 2.83694 3.43436 3.46544 3.56321 3.62445 3.71148 3.79630 3.95547 4.02033 4.04536 4.08038 4.15379 4.26095 4.30783 4.35676 4.39697 4.45694 4.57454 4.62986 4.67126 4.73205 4.76094 4.80515 4.86314 4.87550 4.89335 4.92858 4.98236 5.02602 5.07733 5.14452 5.15695 5.19092 5.39789 5.44456 5.47039 5.56867 5.59486 5.62026 5.79857 6.07832 6.35089 6.71412 7.32155 7.50689 8.32026 8.61249 9.39950 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011156 B = 0.004626 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.166593 B = 6051.667221 C = 6989.391081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.071 4.071 3 Si 0.966 3.034 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.247 4.247 8 H 0.062 0.938 9 N -0.737 5.737 10 C 0.144 3.856 11 C 0.127 3.873 12 H 0.043 0.957 13 C -0.113 4.113 14 C -0.120 4.120 15 C 0.097 3.903 16 N -0.605 5.605 17 C 0.499 3.501 18 O -0.521 6.521 19 C 0.152 3.848 20 C -0.092 4.092 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.114 4.114 24 C -0.118 4.118 25 C -0.101 4.101 26 C -0.142 4.142 27 C -0.143 4.143 28 C 0.045 3.955 29 O -0.348 6.348 30 H 0.243 0.757 31 H 0.389 0.611 32 H 0.010 0.990 33 H 0.023 0.977 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.138 0.862 42 H 0.153 0.847 43 H 0.157 0.843 44 H 0.143 0.857 45 H 0.056 0.944 46 H 0.092 0.908 47 H 0.105 0.895 48 H 0.078 0.922 49 H 0.134 0.866 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.378 -21.122 13.344 25.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.264 4.264 3 Si 0.795 3.205 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.197 1.197 7 C -0.379 4.379 8 H 0.080 0.920 9 N -0.388 5.388 10 C 0.017 3.983 11 C 0.023 3.977 12 H 0.061 0.939 13 C -0.151 4.151 14 C -0.158 4.158 15 C -0.025 4.025 16 N -0.340 5.340 17 C 0.286 3.714 18 O -0.395 6.395 19 C 0.109 3.891 20 C -0.092 4.092 21 C -0.145 4.145 22 C -0.143 4.143 23 C -0.132 4.132 24 C -0.135 4.135 25 C -0.119 4.119 26 C -0.180 4.180 27 C -0.181 4.181 28 C -0.031 4.031 29 O -0.267 6.267 30 H 0.052 0.948 31 H 0.230 0.770 32 H 0.028 0.972 33 H 0.040 0.960 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.135 0.865 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.121 0.879 41 H 0.156 0.844 42 H 0.171 0.829 43 H 0.175 0.825 44 H 0.160 0.840 45 H 0.075 0.925 46 H 0.111 0.889 47 H 0.123 0.877 48 H 0.097 0.903 49 H 0.152 0.848 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.460 -20.655 13.086 24.575 hybrid contribution 0.123 2.255 -0.577 2.330 sum -2.337 -18.400 12.509 22.372 Atomic orbital electron populations 1.69981 1.06426 1.24818 1.58852 1.25509 0.96234 1.00570 1.04125 0.85263 0.77621 0.80156 0.77455 1.21322 1.22283 1.19712 1.19535 0.90726 0.86113 1.41575 0.91978 1.43165 1.07103 1.00156 1.88381 1.21176 0.93910 0.86266 0.96997 1.21867 0.95744 0.96768 0.83285 0.93891 1.22613 1.00484 0.90925 1.01120 1.22828 1.02534 0.97159 0.93273 1.22688 1.01089 0.81898 0.96792 1.48433 1.54937 1.18266 1.12341 1.21029 0.78442 0.81832 0.90103 1.90786 1.51484 1.30791 1.66483 1.20656 0.87243 0.93622 0.87613 1.19416 0.91678 0.95291 1.02836 1.21083 0.92832 1.00146 1.00420 1.21351 0.98193 0.95021 0.99764 1.21570 0.98874 0.94724 0.98005 1.21528 0.91655 1.01061 0.99281 1.21209 1.00413 0.92029 0.98218 1.22980 1.01497 0.94652 0.98913 1.23111 0.95034 1.00488 0.99436 1.23700 0.93552 0.87082 0.98807 1.88805 1.35522 1.29958 1.72398 0.94846 0.76983 0.97176 0.95976 0.88489 0.89481 0.90347 0.86507 0.89264 0.91256 0.87888 0.84390 0.82904 0.82519 0.83953 0.92501 0.88921 0.87687 0.90323 0.84818 0.94811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -64.48 13.06 21.65 0.28 -64.20 16 2 C -0.07 -4.53 5.50 84.86 0.47 -4.06 16 3 Si 0.97 50.22 29.55 68.60 2.03 52.25 16 4 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 5 H -0.30 -15.39 7.11 99.48 0.71 -14.69 16 6 H -0.27 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.25 -15.48 9.99 84.03 0.84 -14.64 16 8 H 0.06 3.75 7.83 -2.91 -0.02 3.73 16 9 N -0.74 -43.25 4.39 -343.44 -1.51 -44.75 16 10 C 0.14 6.65 5.62 86.38 0.49 7.14 16 11 C 0.13 4.73 3.05 45.34 0.14 4.87 16 12 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 13 C -0.11 -2.70 6.46 31.78 0.21 -2.49 16 14 C -0.12 -2.23 7.09 31.99 0.23 -2.00 16 15 C 0.10 2.42 5.40 86.86 0.47 2.88 16 16 N -0.60 -21.81 3.06 -788.05 -2.41 -24.22 16 17 C 0.50 21.19 6.42 87.66 0.56 21.75 16 18 O -0.52 -28.42 11.90 -3.03 -0.04 -28.46 16 19 C 0.15 5.12 0.58 -11.91 -0.01 5.12 16 20 C -0.09 -2.68 4.66 -19.87 -0.09 -2.77 16 21 C -0.13 -3.76 8.67 22.27 0.19 -3.56 16 22 C -0.13 -2.87 10.05 22.27 0.22 -2.64 16 23 C -0.11 -2.03 10.05 22.27 0.22 -1.81 16 24 C -0.12 -2.05 10.05 22.27 0.22 -1.83 16 25 C -0.10 -2.28 7.84 22.27 0.17 -2.11 16 26 C -0.14 -5.02 5.60 31.59 0.18 -4.85 16 27 C -0.14 -3.95 7.15 31.89 0.23 -3.73 16 28 C 0.04 1.22 7.66 72.66 0.56 1.78 16 29 O -0.35 -9.99 7.38 -148.98 -1.10 -11.09 16 30 H 0.24 15.94 8.31 -92.71 -0.77 15.17 16 31 H 0.39 24.86 4.81 -92.71 -0.45 24.41 16 32 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.02 1.00 8.11 -2.39 -0.02 0.98 16 34 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.09 1.93 7.85 -2.39 -0.02 1.91 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.09 2.04 3.90 -2.39 -0.01 2.03 16 39 H 0.07 1.69 7.90 -2.38 -0.02 1.67 16 40 H 0.10 3.49 7.18 -2.91 -0.02 3.47 16 41 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 42 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 43 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 44 H 0.14 2.86 5.72 -2.91 -0.02 2.84 16 45 H 0.06 2.63 6.69 -2.39 -0.02 2.61 16 46 H 0.09 2.94 6.50 -2.39 -0.02 2.92 16 47 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 50 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -84.86 384.75 3.05 -81.81 By element: Atomic # 1 Polarization: 41.11 SS G_CDS: 0.50 Total: 41.61 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 5.30 Total: -2.95 kcal Atomic # 7 Polarization: -129.54 SS G_CDS: -3.64 Total: -133.17 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -1.14 Total: -39.55 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 2.03 Total: 52.25 kcal Total: -84.86 3.05 -81.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277990832.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.680 kcal (2) G-P(sol) polarization free energy of solvation -84.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds