Wall clock time and date at job start Wed Apr 1 2020 03:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48504 * 109.47304 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46927 * 299.99970 * 3 2 1 6 6 H 1.48496 * 109.47387 * 59.99758 * 3 2 1 7 7 C 1.38812 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00017 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00208 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47258 * 187.78784 * 10 9 7 12 12 H 1.09004 * 109.99742 * 318.39768 * 11 10 9 13 13 C 1.54330 * 109.98958 * 197.36190 * 11 10 9 14 14 C 1.55149 * 103.02115 * 218.66360 * 13 11 10 15 15 C 1.54907 * 101.58456 * 35.30773 * 14 13 11 16 16 N 1.47023 * 109.88145 * 79.49500 * 11 10 9 17 17 C 1.34772 * 125.64674 * 298.38870 * 16 11 10 18 18 O 1.21274 * 120.00512 * 3.36770 * 17 16 11 19 19 C 1.50704 * 119.99546 * 183.36606 * 17 16 11 20 20 C 1.50699 * 109.87202 * 82.35207 * 19 17 16 21 21 C 1.38232 * 120.00192 * 62.37860 * 20 19 17 22 22 C 1.38233 * 119.99703 * 179.79202 * 21 20 19 23 23 C 1.38230 * 120.00226 * 0.46297 * 22 21 20 24 24 C 1.38235 * 119.99870 * 359.76981 * 23 22 21 25 25 C 1.38228 * 120.00139 * 0.02562 * 24 23 22 26 26 C 1.54103 * 109.87703 * 203.35503 * 19 17 16 27 27 C 1.54813 * 104.30488 * 117.32741 * 26 19 17 28 28 C 1.55220 * 101.98612 * 339.26200 * 27 26 19 29 29 O 1.43743 * 109.88055 * 321.18703 * 19 17 16 30 30 H 0.97006 * 120.00527 * 0.02562 * 1 2 3 31 31 H 0.97005 * 120.00052 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.46919 * 67.78507 * 10 9 7 33 33 H 1.09003 * 109.46765 * 307.78847 * 10 9 7 34 34 H 1.08999 * 110.84998 * 100.19292 * 13 11 10 35 35 H 1.08998 * 110.66987 * 337.04770 * 13 11 10 36 36 H 1.09005 * 111.00779 * 277.23367 * 14 13 11 37 37 H 1.09007 * 111.00884 * 153.38438 * 14 13 11 38 38 H 1.09001 * 110.37085 * 204.15272 * 15 14 13 39 39 H 1.09003 * 110.36584 * 81.82636 * 15 14 13 40 40 H 1.08001 * 120.00058 * 0.02562 * 21 20 19 41 41 H 1.08003 * 119.99393 * 180.25410 * 22 21 20 42 42 H 1.07999 * 120.00251 * 179.79466 * 23 22 21 43 43 H 1.08005 * 119.99992 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.00005 * 179.97438 * 25 24 23 45 45 H 1.08994 * 110.49042 * 236.07121 * 26 19 17 46 46 H 1.09002 * 110.48452 * 358.58614 * 26 19 17 47 47 H 1.09001 * 110.90450 * 97.38486 * 27 26 19 48 48 H 1.08996 * 110.90394 * 220.98877 * 27 26 19 49 49 H 1.09003 * 110.52244 * 278.38430 * 28 27 26 50 50 H 1.09004 * 110.64353 * 155.43748 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0754 -4.8131 -0.1960 12 1 0.1760 -4.6419 0.3956 13 6 1.7342 -6.1427 0.2279 14 6 1.2127 -7.1457 -0.8347 15 6 1.1603 -6.2567 -2.1022 16 7 0.7229 -4.9346 -1.6182 17 6 0.1069 -3.9915 -2.3581 18 8 -0.1498 -2.9107 -1.8714 19 6 -0.2630 -4.2800 -3.7902 20 6 -1.5649 -5.0373 -3.8405 21 6 -2.7219 -4.4557 -3.3569 22 6 -3.9169 -5.1488 -3.4070 23 6 -3.9531 -6.4270 -3.9319 24 6 -2.7952 -7.0104 -4.4111 25 6 -1.6010 -6.3158 -4.3649 26 6 -0.3944 -2.9595 -4.5737 27 6 0.7065 -3.0473 -5.6586 28 6 1.6673 -4.1081 -5.0579 29 8 0.7771 -5.0480 -4.4185 30 1 -0.4851 0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 2.5763 -3.7771 0.9509 33 1 2.7851 -3.6565 -0.8127 34 1 1.4098 -6.4354 1.2265 35 1 2.8205 -6.0649 0.1844 36 1 0.2198 -7.5114 -0.5728 37 1 1.9099 -7.9732 -0.9665 38 1 0.4405 -6.6563 -2.8166 39 1 2.1484 -6.1861 -2.5572 40 1 -2.6929 -3.4584 -2.9433 41 1 -4.8216 -4.6928 -3.0328 42 1 -4.8861 -6.9698 -3.9680 43 1 -2.8234 -8.0093 -4.8209 44 1 -0.6963 -6.7718 -4.7390 45 1 -1.3793 -2.8858 -5.0346 46 1 -0.2164 -2.1074 -3.9176 47 1 0.2920 -3.3907 -6.6064 48 1 1.2098 -2.0882 -5.7804 49 1 2.3324 -3.6502 -4.3256 50 1 2.2406 -4.5972 -5.8455 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277990834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:34 Heat of formation + Delta-G solvation = -16.723916 kcal Electronic energy + Delta-G solvation = -32709.012540 eV Core-core repulsion = 28702.177946 eV Total energy + Delta-G solvation = -4006.834594 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.88088 -38.96473 -38.29125 -36.76175 -34.17727 -32.38642 -32.15092 -31.16605 -30.94493 -30.76261 -28.61337 -28.00532 -24.94209 -24.15713 -22.81171 -22.77728 -22.04709 -21.41306 -21.13496 -20.18160 -18.53512 -17.51276 -17.17452 -16.32736 -16.24817 -16.03164 -15.59961 -14.90546 -14.67787 -14.55993 -14.25635 -13.88202 -13.59228 -13.45610 -13.31358 -13.23498 -13.03994 -12.88699 -12.77681 -12.62423 -12.18856 -12.00116 -11.74314 -11.60141 -11.40132 -11.25825 -11.08443 -11.07659 -10.92996 -10.87419 -10.70712 -10.57565 -10.51004 -10.40771 -10.25540 -9.82168 -9.47863 -9.06944 -8.88138 -8.66145 -8.44678 -8.00053 -6.56922 -5.47617 -2.73726 1.31003 1.43388 3.21423 3.39910 3.54254 3.59207 3.61561 3.67522 3.84440 4.56886 4.70940 4.74968 4.78503 4.83094 4.95659 4.98393 5.02757 5.06998 5.12634 5.16340 5.25457 5.44886 5.54780 5.55602 5.60185 5.61064 5.74338 5.78137 5.80327 5.86799 5.88953 5.91064 5.96377 6.01477 6.06668 6.10074 6.12840 6.21995 6.30312 6.33846 6.45655 6.53189 6.55517 6.58567 6.63438 6.85926 6.90023 7.00035 7.11463 7.88819 8.10470 8.66660 8.87670 9.82282 10.47729 10.85743 11.73923 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010891 B = 0.004442 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.216262 B = 6301.549901 C = 7007.187629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.895 3.105 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.231 4.231 8 H 0.061 0.939 9 N -0.716 5.716 10 C 0.148 3.852 11 C 0.129 3.871 12 H 0.071 0.929 13 C -0.124 4.124 14 C -0.136 4.136 15 C 0.113 3.887 16 N -0.604 5.604 17 C 0.506 3.494 18 O -0.455 6.455 19 C 0.140 3.860 20 C -0.073 4.073 21 C -0.102 4.102 22 C -0.119 4.119 23 C -0.121 4.121 24 C -0.127 4.127 25 C -0.097 4.097 26 C -0.138 4.138 27 C -0.151 4.151 28 C 0.044 3.956 29 O -0.357 6.357 30 H 0.248 0.752 31 H 0.395 0.605 32 H 0.016 0.984 33 H 0.018 0.982 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.131 0.869 45 H 0.080 0.920 46 H 0.108 0.892 47 H 0.074 0.926 48 H 0.083 0.917 49 H 0.065 0.935 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.855 -18.303 -11.236 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.207 4.207 3 Si 0.727 3.273 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.363 4.363 8 H 0.079 0.921 9 N -0.364 5.364 10 C 0.019 3.981 11 C 0.026 3.974 12 H 0.089 0.911 13 C -0.162 4.162 14 C -0.175 4.175 15 C -0.010 4.010 16 N -0.341 5.341 17 C 0.290 3.710 18 O -0.324 6.324 19 C 0.097 3.903 20 C -0.073 4.073 21 C -0.120 4.120 22 C -0.137 4.137 23 C -0.139 4.139 24 C -0.145 4.145 25 C -0.115 4.115 26 C -0.175 4.175 27 C -0.188 4.188 28 C -0.032 4.032 29 O -0.276 6.276 30 H 0.058 0.942 31 H 0.234 0.766 32 H 0.033 0.967 33 H 0.036 0.964 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.148 0.852 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.148 0.852 45 H 0.099 0.901 46 H 0.126 0.874 47 H 0.093 0.907 48 H 0.102 0.898 49 H 0.084 0.916 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.919 -17.712 -11.011 21.059 hybrid contribution 0.296 1.140 -0.071 1.180 sum -2.623 -16.573 -11.082 20.108 Atomic orbital electron populations 1.69734 1.04765 1.24436 1.57792 1.24632 0.95314 0.96953 1.03751 0.86296 0.78759 0.85246 0.77008 1.20908 1.22230 1.22176 1.19172 0.90487 0.84652 1.42007 0.92096 1.42564 1.06586 0.98891 1.88322 1.20963 0.93247 0.86622 0.97269 1.21884 0.98439 0.95355 0.81733 0.91060 1.22615 1.00922 0.93713 0.98962 1.22815 1.01619 0.97543 0.95477 1.22209 1.00074 0.82835 0.95905 1.48300 1.59287 1.15937 1.10571 1.20280 0.79316 0.84062 0.87353 1.90994 1.50182 1.20667 1.70594 1.20970 0.86726 0.91576 0.91067 1.19450 0.92775 0.94928 1.00181 1.21124 0.91862 1.00775 0.98231 1.21102 0.97773 0.94940 0.99906 1.21155 0.98236 0.95492 0.99048 1.21104 0.92744 0.99850 1.00773 1.20982 0.98238 0.93654 0.98581 1.23009 1.00035 0.97091 0.97415 1.23143 0.96768 1.00277 0.98651 1.23650 0.92843 0.90252 0.96441 1.88837 1.37645 1.30313 1.70843 0.94197 0.76615 0.96674 0.96410 0.90401 0.90554 0.91069 0.90398 0.90547 0.91960 0.85156 0.85903 0.86303 0.86179 0.85155 0.90089 0.87410 0.90733 0.89822 0.91630 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.51 13.06 55.49 0.72 -28.79 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.89 23.63 29.55 -169.99 -5.02 18.61 16 4 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 7 C -0.23 -6.95 9.99 -15.06 -0.15 -7.10 16 8 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.72 -19.72 4.08 -59.90 -0.24 -19.97 16 10 C 0.15 3.27 5.60 -4.04 -0.02 3.24 16 11 C 0.13 2.32 3.06 -66.95 -0.20 2.12 16 12 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 13 C -0.12 -1.61 6.42 -24.90 -0.16 -1.77 16 14 C -0.14 -1.52 7.09 -24.59 -0.17 -1.69 16 15 C 0.11 1.51 5.45 -2.53 -0.01 1.50 16 16 N -0.60 -10.47 3.06 -163.01 -0.50 -10.97 16 17 C 0.51 9.80 6.26 -10.99 -0.07 9.73 16 18 O -0.45 -11.11 12.08 5.56 0.07 -11.04 16 19 C 0.14 2.18 0.55 -92.35 -0.05 2.13 16 20 C -0.07 -1.04 4.43 -104.62 -0.46 -1.51 16 21 C -0.10 -1.49 8.69 -39.59 -0.34 -1.84 16 22 C -0.12 -1.47 10.05 -39.59 -0.40 -1.86 16 23 C -0.12 -1.30 10.05 -39.59 -0.40 -1.70 16 24 C -0.13 -1.36 10.05 -39.59 -0.40 -1.75 16 25 C -0.10 -1.19 8.28 -39.58 -0.33 -1.51 16 26 C -0.14 -2.14 5.89 -25.20 -0.15 -2.28 16 27 C -0.15 -1.89 7.17 -24.60 -0.18 -2.06 16 28 C 0.04 0.56 7.66 38.33 0.29 0.86 16 29 O -0.36 -4.93 6.71 -35.23 -0.24 -5.17 16 30 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 31 H 0.40 11.72 5.55 -40.82 -0.23 11.49 16 32 H 0.02 0.34 8.04 -51.93 -0.42 -0.08 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.95 7.85 -51.93 -0.41 0.54 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.69 8.14 -51.92 -0.42 0.26 16 38 H 0.08 0.98 5.31 -51.93 -0.28 0.71 16 39 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 40 H 0.13 2.13 8.05 -52.49 -0.42 1.71 16 41 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 44 H 0.13 1.49 6.73 -52.49 -0.35 1.14 16 45 H 0.08 1.15 7.35 -51.93 -0.38 0.77 16 46 H 0.11 2.08 6.68 -51.93 -0.35 1.73 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 50 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 389.17 15.07 5.86 5.86 Total: -1.00 -35.27 389.17 -10.51 -45.78 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -7.86 Total: 11.59 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -3.30 Total: -5.92 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.02 Total: -59.73 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.17 Total: -16.21 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -5.02 Total: 18.61 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.27 -10.51 -45.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277990834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.061 kcal (2) G-P(sol) polarization free energy of solvation -35.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds