Wall clock time and date at job start Wed Apr 1 2020 03:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48504 * 109.47304 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46927 * 299.99970 * 3 2 1 6 6 H 1.48496 * 109.47387 * 59.99758 * 3 2 1 7 7 C 1.38812 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00017 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00208 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47258 * 187.78784 * 10 9 7 12 12 H 1.09004 * 109.99742 * 318.39768 * 11 10 9 13 13 C 1.54330 * 109.98958 * 197.36190 * 11 10 9 14 14 C 1.55149 * 103.02115 * 218.66360 * 13 11 10 15 15 C 1.54907 * 101.58456 * 35.30773 * 14 13 11 16 16 N 1.47023 * 109.88145 * 79.49500 * 11 10 9 17 17 C 1.34772 * 125.64674 * 298.38870 * 16 11 10 18 18 O 1.21274 * 120.00512 * 3.36770 * 17 16 11 19 19 C 1.50704 * 119.99546 * 183.36606 * 17 16 11 20 20 C 1.50699 * 109.87202 * 82.35207 * 19 17 16 21 21 C 1.38232 * 120.00192 * 62.37860 * 20 19 17 22 22 C 1.38233 * 119.99703 * 179.79202 * 21 20 19 23 23 C 1.38230 * 120.00226 * 0.46297 * 22 21 20 24 24 C 1.38235 * 119.99870 * 359.76981 * 23 22 21 25 25 C 1.38228 * 120.00139 * 0.02562 * 24 23 22 26 26 C 1.54103 * 109.87703 * 203.35503 * 19 17 16 27 27 C 1.54813 * 104.30488 * 117.32741 * 26 19 17 28 28 C 1.55220 * 101.98612 * 339.26200 * 27 26 19 29 29 O 1.43743 * 109.88055 * 321.18703 * 19 17 16 30 30 H 0.97006 * 120.00527 * 0.02562 * 1 2 3 31 31 H 0.97005 * 120.00052 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.46919 * 67.78507 * 10 9 7 33 33 H 1.09003 * 109.46765 * 307.78847 * 10 9 7 34 34 H 1.08999 * 110.84998 * 100.19292 * 13 11 10 35 35 H 1.08998 * 110.66987 * 337.04770 * 13 11 10 36 36 H 1.09005 * 111.00779 * 277.23367 * 14 13 11 37 37 H 1.09007 * 111.00884 * 153.38438 * 14 13 11 38 38 H 1.09001 * 110.37085 * 204.15272 * 15 14 13 39 39 H 1.09003 * 110.36584 * 81.82636 * 15 14 13 40 40 H 1.08001 * 120.00058 * 0.02562 * 21 20 19 41 41 H 1.08003 * 119.99393 * 180.25410 * 22 21 20 42 42 H 1.07999 * 120.00251 * 179.79466 * 23 22 21 43 43 H 1.08005 * 119.99992 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.00005 * 179.97438 * 25 24 23 45 45 H 1.08994 * 110.49042 * 236.07121 * 26 19 17 46 46 H 1.09002 * 110.48452 * 358.58614 * 26 19 17 47 47 H 1.09001 * 110.90450 * 97.38486 * 27 26 19 48 48 H 1.08996 * 110.90394 * 220.98877 * 27 26 19 49 49 H 1.09003 * 110.52244 * 278.38430 * 28 27 26 50 50 H 1.09004 * 110.64353 * 155.43748 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0754 -4.8131 -0.1960 12 1 0.1760 -4.6419 0.3956 13 6 1.7342 -6.1427 0.2279 14 6 1.2127 -7.1457 -0.8347 15 6 1.1603 -6.2567 -2.1022 16 7 0.7229 -4.9346 -1.6182 17 6 0.1069 -3.9915 -2.3581 18 8 -0.1498 -2.9107 -1.8714 19 6 -0.2630 -4.2800 -3.7902 20 6 -1.5649 -5.0373 -3.8405 21 6 -2.7219 -4.4557 -3.3569 22 6 -3.9169 -5.1488 -3.4070 23 6 -3.9531 -6.4270 -3.9319 24 6 -2.7952 -7.0104 -4.4111 25 6 -1.6010 -6.3158 -4.3649 26 6 -0.3944 -2.9595 -4.5737 27 6 0.7065 -3.0473 -5.6586 28 6 1.6673 -4.1081 -5.0579 29 8 0.7771 -5.0480 -4.4185 30 1 -0.4851 0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 2.5763 -3.7771 0.9509 33 1 2.7851 -3.6565 -0.8127 34 1 1.4098 -6.4354 1.2265 35 1 2.8205 -6.0649 0.1844 36 1 0.2198 -7.5114 -0.5728 37 1 1.9099 -7.9732 -0.9665 38 1 0.4405 -6.6563 -2.8166 39 1 2.1484 -6.1861 -2.5572 40 1 -2.6929 -3.4584 -2.9433 41 1 -4.8216 -4.6928 -3.0328 42 1 -4.8861 -6.9698 -3.9680 43 1 -2.8234 -8.0093 -4.8209 44 1 -0.6963 -6.7718 -4.7390 45 1 -1.3793 -2.8858 -5.0346 46 1 -0.2164 -2.1074 -3.9176 47 1 0.2920 -3.3907 -6.6064 48 1 1.2098 -2.0882 -5.7804 49 1 2.3324 -3.6502 -4.3256 50 1 2.2406 -4.5972 -5.8455 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277990834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:32 Heat of formation + Delta-G solvation = -38.830815 kcal Electronic energy + Delta-G solvation = -32709.971167 eV Core-core repulsion = 28702.177946 eV Total energy + Delta-G solvation = -4007.793221 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.12040 -40.19492 -39.33471 -38.21525 -36.21952 -33.56744 -33.44111 -33.01598 -32.13053 -31.72960 -30.30399 -29.09555 -26.68411 -25.54297 -24.37641 -23.78420 -23.47697 -22.56989 -22.24470 -21.43381 -19.95645 -19.15103 -18.54990 -17.87061 -17.54230 -17.20059 -16.70854 -16.57787 -16.11624 -15.67542 -15.52484 -15.23929 -15.12642 -14.91671 -14.71683 -14.65784 -14.26054 -14.16806 -13.97175 -13.70205 -13.59990 -13.41280 -13.12773 -12.92833 -12.91088 -12.81449 -12.70534 -12.33841 -12.24273 -12.20127 -11.99101 -11.91601 -11.88694 -11.73749 -11.61365 -11.51748 -11.41888 -10.93040 -10.37029 -9.83995 -9.60085 -9.48177 -8.81571 -7.83220 -5.10275 0.33240 0.47862 1.39437 1.42248 1.51623 1.76441 2.08387 2.55617 2.57081 2.84784 3.43052 3.46722 3.54053 3.62841 3.72005 3.79560 3.94951 4.01554 4.04361 4.08161 4.15910 4.27036 4.32390 4.34186 4.39532 4.41250 4.57615 4.63675 4.67296 4.70621 4.77965 4.79919 4.86678 4.87986 4.89991 4.93971 4.99129 5.02613 5.06578 5.14363 5.15514 5.18678 5.39383 5.45041 5.46872 5.58201 5.59824 5.62140 5.80031 6.07924 6.33994 6.71696 7.34486 7.48092 8.28390 8.52525 9.39352 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010891 B = 0.004442 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.216262 B = 6301.549901 C = 7007.187629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.073 4.073 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.297 1.297 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.064 0.936 9 N -0.728 5.728 10 C 0.148 3.852 11 C 0.128 3.872 12 H 0.043 0.957 13 C -0.114 4.114 14 C -0.121 4.121 15 C 0.107 3.893 16 N -0.606 5.606 17 C 0.495 3.505 18 O -0.521 6.521 19 C 0.152 3.848 20 C -0.087 4.087 21 C -0.129 4.129 22 C -0.126 4.126 23 C -0.114 4.114 24 C -0.116 4.116 25 C -0.096 4.096 26 C -0.141 4.141 27 C -0.143 4.143 28 C 0.043 3.957 29 O -0.347 6.347 30 H 0.243 0.757 31 H 0.382 0.618 32 H 0.025 0.975 33 H 0.008 0.992 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.133 0.867 42 H 0.153 0.847 43 H 0.158 0.842 44 H 0.145 0.855 45 H 0.086 0.914 46 H 0.056 0.944 47 H 0.104 0.896 48 H 0.082 0.918 49 H 0.037 0.963 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.030 -22.291 -12.947 25.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.266 4.266 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.224 1.224 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.082 0.918 9 N -0.374 5.374 10 C 0.020 3.980 11 C 0.024 3.976 12 H 0.061 0.939 13 C -0.152 4.152 14 C -0.159 4.159 15 C -0.015 4.015 16 N -0.341 5.341 17 C 0.281 3.719 18 O -0.395 6.395 19 C 0.109 3.891 20 C -0.088 4.088 21 C -0.147 4.147 22 C -0.144 4.144 23 C -0.132 4.132 24 C -0.134 4.134 25 C -0.114 4.114 26 C -0.179 4.179 27 C -0.180 4.180 28 C -0.033 4.033 29 O -0.266 6.266 30 H 0.052 0.948 31 H 0.218 0.782 32 H 0.043 0.957 33 H 0.026 0.974 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.134 0.866 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.151 0.849 42 H 0.170 0.830 43 H 0.175 0.825 44 H 0.162 0.838 45 H 0.105 0.895 46 H 0.075 0.925 47 H 0.123 0.877 48 H 0.100 0.900 49 H 0.055 0.945 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.036 -21.779 -12.727 25.307 hybrid contribution 0.021 2.315 0.462 2.360 sum -2.015 -19.464 -12.265 23.094 Atomic orbital electron populations 1.69947 1.06547 1.24860 1.59365 1.25489 0.96229 1.00619 1.04236 0.85174 0.78183 0.80421 0.76621 1.19164 1.22436 1.21803 1.19564 0.90753 0.86017 1.40967 0.91838 1.42761 1.06196 1.00246 1.88213 1.21132 0.93768 0.86182 0.96929 1.21856 0.96610 0.96708 0.82400 0.93893 1.22613 1.01130 0.90900 1.00550 1.22828 1.02922 0.97371 0.92729 1.22494 1.00415 0.81059 0.97497 1.48485 1.58168 1.17166 1.10243 1.21090 0.78375 0.83472 0.88985 1.90960 1.52823 1.23434 1.72272 1.20674 0.87956 0.91885 0.88601 1.19361 0.91492 0.96080 1.01864 1.20991 0.93690 0.99908 1.00139 1.21300 0.97101 0.95934 1.00083 1.21547 0.99888 0.94444 0.97290 1.21534 0.91662 1.01021 0.99187 1.21161 0.99700 0.92442 0.98060 1.22925 1.01643 0.95653 0.97679 1.23165 0.95585 1.00563 0.98698 1.23786 0.92458 0.90468 0.96590 1.88821 1.37261 1.29953 1.70528 0.94802 0.78209 0.95748 0.97432 0.88607 0.89468 0.90486 0.86578 0.89579 0.91335 0.88965 0.84889 0.82976 0.82468 0.83768 0.89501 0.92529 0.87721 0.89974 0.94496 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -65.17 13.06 21.65 0.28 -64.89 16 2 C -0.07 -4.67 5.50 84.86 0.47 -4.20 16 3 Si 0.97 50.56 29.55 68.60 2.03 52.59 16 4 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 6 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 7 C -0.24 -15.12 9.99 84.03 0.84 -14.28 16 8 H 0.06 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.73 -42.68 4.08 -343.44 -1.40 -44.08 16 10 C 0.15 6.80 5.60 86.38 0.48 7.28 16 11 C 0.13 4.75 3.06 45.34 0.14 4.89 16 12 H 0.04 1.82 8.03 -2.39 -0.02 1.80 16 13 C -0.11 -2.72 6.42 31.78 0.20 -2.52 16 14 C -0.12 -2.25 7.09 31.98 0.23 -2.02 16 15 C 0.11 2.65 5.45 86.85 0.47 3.12 16 16 N -0.61 -21.58 3.06 -788.04 -2.41 -23.99 16 17 C 0.49 20.59 6.26 87.66 0.55 21.14 16 18 O -0.52 -28.19 12.08 -3.01 -0.04 -28.22 16 19 C 0.15 4.95 0.55 -11.91 -0.01 4.94 16 20 C -0.09 -2.53 4.43 -19.87 -0.09 -2.62 16 21 C -0.13 -4.03 8.69 22.27 0.19 -3.84 16 22 C -0.13 -3.07 10.05 22.27 0.22 -2.85 16 23 C -0.11 -2.09 10.05 22.27 0.22 -1.87 16 24 C -0.12 -2.02 10.05 22.27 0.22 -1.79 16 25 C -0.10 -2.10 8.28 22.27 0.18 -1.92 16 26 C -0.14 -4.75 5.89 31.59 0.19 -4.56 16 27 C -0.14 -3.57 7.17 31.97 0.23 -3.34 16 28 C 0.04 1.05 7.66 72.74 0.56 1.61 16 29 O -0.35 -9.20 6.71 -148.98 -1.00 -10.20 16 30 H 0.24 16.00 8.31 -92.70 -0.77 15.22 16 31 H 0.38 24.49 5.55 -92.70 -0.51 23.98 16 32 H 0.02 1.09 8.04 -2.39 -0.02 1.07 16 33 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.09 1.93 7.85 -2.39 -0.02 1.91 16 36 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.09 1.99 5.31 -2.39 -0.01 1.97 16 39 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16 40 H 0.09 3.51 8.05 -2.91 -0.02 3.48 16 41 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 42 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 43 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 44 H 0.14 2.74 6.73 -2.91 -0.02 2.72 16 45 H 0.09 2.71 7.35 -2.39 -0.02 2.70 16 46 H 0.06 2.49 6.68 -2.39 -0.02 2.48 16 47 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.14 2.22 8.14 -2.38 -0.02 2.20 16 Total: -1.00 -84.91 389.17 3.19 -81.72 By element: Atomic # 1 Polarization: 39.49 SS G_CDS: 0.42 Total: 39.92 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 5.31 Total: -2.83 kcal Atomic # 7 Polarization: -129.43 SS G_CDS: -3.53 Total: -132.96 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -1.04 Total: -38.42 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 2.03 Total: 52.59 kcal Total: -84.91 3.19 -81.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277990834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.884 kcal (2) G-P(sol) polarization free energy of solvation -84.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds