Wall clock time and date at job start Wed Apr 1 2020 03:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 119.99902 * 2 1 4 4 H 1.48499 * 109.47570 * 270.00516 * 3 2 1 5 5 H 1.48500 * 109.47362 * 30.00706 * 3 2 1 6 6 H 1.48506 * 109.46962 * 150.00489 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00296 * 164.47185 * 7 2 1 9 9 N 1.36938 * 120.00085 * 344.47639 * 7 2 1 10 10 C 1.47112 * 121.51017 * 336.18389 * 9 7 2 11 11 C 1.50316 * 109.10903 * 223.15910 * 10 9 7 12 12 C 1.29459 * 123.65508 * 348.54409 * 11 10 9 13 13 C 1.50696 * 117.69855 * 181.13441 * 12 11 10 14 14 N 1.46504 * 109.46943 * 94.99994 * 13 12 11 15 15 C 1.34774 * 120.00062 * 180.02562 * 14 13 12 16 16 O 1.21288 * 120.00081 * 0.02562 * 15 14 13 17 17 C 1.50708 * 120.00183 * 179.97438 * 15 14 13 18 18 O 1.42897 * 109.47005 * 180.02562 * 17 15 14 19 19 C 1.42900 * 113.99560 * 180.02562 * 18 17 15 20 20 C 1.53004 * 109.46845 * 180.02562 * 19 18 17 21 21 C 1.50700 * 109.46989 * 180.02562 * 20 19 18 22 22 C 1.38231 * 119.99661 * 269.72521 * 21 20 19 23 23 C 1.38241 * 120.00003 * 179.76881 * 22 21 20 24 24 C 1.38241 * 119.99927 * 0.50455 * 23 22 21 25 25 C 1.38241 * 119.99714 * 359.74666 * 24 23 22 26 26 C 1.38230 * 120.00045 * 0.02562 * 25 24 23 27 27 C 1.49969 * 124.60715 * 1.16032 * 12 11 10 28 28 C 1.47337 * 121.37748 * 155.99297 * 9 7 2 29 29 H 0.97000 * 119.99856 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.71510 * 103.17151 * 10 9 7 31 31 H 1.08999 * 109.38607 * 342.95488 * 10 9 7 32 32 H 1.08004 * 118.17546 * 168.82104 * 11 10 9 33 33 H 1.08998 * 109.47286 * 214.99651 * 13 12 11 34 34 H 1.08996 * 109.47018 * 335.00571 * 13 12 11 35 35 H 0.97001 * 119.99882 * 359.97438 * 14 13 12 36 36 H 1.08998 * 109.46873 * 300.00008 * 17 15 14 37 37 H 1.08993 * 109.46453 * 59.99968 * 17 15 14 38 38 H 1.08994 * 109.47122 * 299.99863 * 19 18 17 39 39 H 1.09005 * 109.47278 * 60.00327 * 19 18 17 40 40 H 1.09006 * 109.46872 * 299.99313 * 20 19 18 41 41 H 1.08994 * 109.47385 * 59.99661 * 20 19 18 42 42 H 1.08001 * 120.00413 * 359.97438 * 22 21 20 43 43 H 1.07994 * 120.00270 * 180.23332 * 23 22 21 44 44 H 1.07995 * 120.00522 * 179.72765 * 24 23 22 45 45 H 1.07997 * 119.99858 * 179.97438 * 25 24 23 46 46 H 1.07998 * 120.00303 * 179.97438 * 26 25 24 47 47 H 1.09000 * 109.31763 * 101.26333 * 27 12 11 48 48 H 1.09005 * 109.31493 * 220.69788 * 27 12 11 49 49 H 1.08999 * 109.77655 * 358.61864 * 28 9 7 50 50 H 1.08997 * 109.77795 * 237.80877 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0606 -1.2192 -0.2509 9 7 1.3630 -2.3666 0.3163 10 6 0.1415 -2.3687 1.1361 11 6 0.2255 -3.4831 2.1414 12 6 1.1208 -4.4174 2.1037 13 6 1.0645 -5.4847 3.1660 14 7 0.3200 -6.6399 2.6587 15 6 0.1405 -7.7225 3.4411 16 8 0.5950 -7.7403 4.5654 17 6 -0.6259 -8.9107 2.9193 18 8 -0.6802 -9.9223 3.9271 19 6 -1.3884 -11.0989 3.5319 20 6 -1.3834 -12.1077 4.6822 21 6 -2.1297 -13.3487 4.2653 22 6 -3.4888 -13.4485 4.4972 23 6 -4.1744 -14.5849 4.1104 24 6 -3.4989 -15.6258 3.5011 25 6 -2.1388 -15.5281 3.2738 26 6 -1.4542 -14.3898 3.6564 27 6 2.2104 -4.5121 1.0776 28 6 1.8588 -3.6721 -0.1533 29 1 -0.4850 0.8401 0.0004 30 1 -0.7294 -2.5188 0.4978 31 1 0.0530 -1.4149 1.6560 32 1 -0.5044 -3.5081 2.9371 33 1 2.0774 -5.7914 3.4270 34 1 0.5648 -5.0906 4.0509 35 1 -0.0445 -6.6253 1.7598 36 1 -1.6387 -8.6036 2.6584 37 1 -0.1264 -9.3051 2.0345 38 1 -2.4168 -10.8374 3.2829 39 1 -0.9041 -11.5389 2.6601 40 1 -0.3550 -12.3692 4.9316 41 1 -1.8679 -11.6674 5.5537 42 1 -4.0157 -12.6373 4.9776 43 1 -5.2368 -14.6614 4.2882 44 1 -4.0336 -16.5155 3.2029 45 1 -1.6110 -16.3415 2.7982 46 1 -0.3916 -14.3136 3.4792 47 1 3.1434 -4.1482 1.5078 48 1 2.3357 -5.5531 0.7798 49 1 2.7472 -3.5296 -0.7686 50 1 1.0843 -4.1739 -0.7333 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284994548.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:21 Heat of formation + Delta-G solvation = -23.454549 kcal Electronic energy + Delta-G solvation = -27948.627724 eV Core-core repulsion = 23941.501268 eV Total energy + Delta-G solvation = -4007.126456 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -39.92813 -39.65440 -38.10693 -37.50513 -34.94128 -33.85325 -32.94023 -31.31171 -31.02881 -29.88519 -29.52701 -28.03620 -26.30025 -24.08393 -23.74686 -22.99812 -22.75917 -21.38336 -21.14744 -20.59035 -17.82448 -17.44835 -17.35355 -16.87832 -16.76016 -15.74445 -15.68976 -15.60775 -15.28660 -15.15050 -14.77601 -14.55877 -13.96306 -13.88606 -13.74160 -13.59223 -13.40471 -13.32494 -13.27604 -12.80260 -12.73803 -12.27935 -12.07468 -11.79200 -11.69263 -11.59205 -11.47876 -11.38763 -11.31156 -10.94555 -10.74988 -10.43705 -10.34979 -10.01303 -9.88095 -9.85990 -9.62627 -9.34445 -9.15224 -9.00698 -8.71491 -8.10073 -6.78816 -5.83505 -3.22095 0.89406 0.97586 2.41518 2.59191 3.01464 3.35955 3.37148 3.43183 3.45594 3.86864 4.39710 4.46674 4.48647 4.61104 4.63841 4.69805 4.72701 4.84228 4.93942 4.94583 5.03990 5.09700 5.10913 5.12195 5.32218 5.36904 5.44393 5.48979 5.54304 5.65171 5.70766 5.79524 5.91339 6.03114 6.03998 6.09711 6.13049 6.20900 6.29542 6.40005 6.48896 6.57790 6.69184 6.74071 6.82681 7.12070 7.21566 7.28291 7.53699 7.69167 7.78423 8.21623 8.34108 9.15568 9.78360 10.36328 11.27072 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.031500 B = 0.001362 C = 0.001354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.688608 B =20555.135699 C =20670.079583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.001 4.001 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.247 4.247 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.193 3.807 11 C -0.123 4.123 12 C -0.167 4.167 13 C 0.159 3.841 14 N -0.720 5.720 15 C 0.510 3.490 16 O -0.526 6.526 17 C 0.045 3.955 18 O -0.363 6.363 19 C 0.067 3.933 20 C -0.080 4.080 21 C -0.081 4.081 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.119 4.119 26 C -0.115 4.115 27 C -0.090 4.090 28 C 0.143 3.857 29 H 0.254 0.746 30 H 0.042 0.958 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.402 0.598 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.064 0.936 48 H 0.053 0.947 49 H 0.057 0.943 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.038 -28.821 5.379 30.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.199 4.199 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.068 3.932 11 C -0.143 4.143 12 C -0.168 4.168 13 C 0.037 3.963 14 N -0.373 5.373 15 C 0.295 3.705 16 O -0.401 6.401 17 C -0.035 4.035 18 O -0.282 6.282 19 C -0.010 4.010 20 C -0.117 4.117 21 C -0.082 4.082 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.137 4.137 26 C -0.133 4.133 27 C -0.129 4.129 28 C 0.017 3.983 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.236 0.764 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.083 0.917 48 H 0.071 0.929 49 H 0.076 0.924 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.702 -28.644 6.395 30.105 hybrid contribution -0.011 0.815 -0.690 1.068 sum -6.712 -27.829 5.705 29.190 Atomic orbital electron populations 1.70002 1.05196 1.25559 1.54769 1.24979 0.95393 0.98310 1.01180 0.86258 0.79098 0.83523 0.77685 1.21423 1.21549 1.20511 1.19175 0.92261 0.84340 1.41817 0.91340 1.44153 1.29029 1.01192 1.57427 1.19786 0.88735 0.94913 0.89758 1.23298 0.95785 0.96619 0.98643 1.20492 1.00058 0.97212 0.99030 1.20459 0.96088 0.84177 0.95567 1.46088 1.56909 1.16141 1.18140 1.20223 0.80758 0.83612 0.85950 1.90727 1.49088 1.81283 1.19040 1.22206 1.00567 0.88816 0.91879 1.87987 1.76198 1.25615 1.38358 1.22510 0.95920 0.85435 0.97115 1.20460 1.01433 0.91617 0.98187 1.19744 0.93996 0.95502 0.98910 1.21132 0.93796 0.98212 1.00115 1.21180 0.99990 0.93809 0.98726 1.21194 0.94690 0.98898 0.99392 1.21176 0.94613 0.97942 0.99989 1.21126 1.00098 0.93461 0.98583 1.20759 0.96655 0.99001 0.96502 1.20958 0.97364 0.87227 0.92779 0.93588 0.94066 0.88816 0.88748 0.91508 0.91581 0.76393 0.90215 0.90231 0.92924 0.92929 0.89830 0.89812 0.85860 0.85979 0.86110 0.85986 0.85873 0.91714 0.92876 0.92440 0.95950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.77 11.07 55.49 0.61 -25.16 16 2 C 0.00 -0.02 5.01 -17.43 -0.09 -0.11 16 3 Si 0.90 21.44 29.58 -169.99 -5.03 16.41 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.25 -6.64 9.71 -15.06 -0.15 -6.79 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16 9 N -0.59 -14.49 3.01 -173.59 -0.52 -15.01 16 10 C 0.19 4.44 5.25 -5.05 -0.03 4.41 16 11 C -0.12 -2.26 9.47 -35.78 -0.34 -2.60 16 12 C -0.17 -2.77 5.22 -100.99 -0.53 -3.30 16 13 C 0.16 2.34 5.66 -5.19 -0.03 2.32 16 14 N -0.72 -8.96 5.55 -61.47 -0.34 -9.30 16 15 C 0.51 6.91 7.91 -10.98 -0.09 6.82 16 16 O -0.53 -9.54 16.50 -14.36 -0.24 -9.78 16 17 C 0.05 0.44 6.42 36.01 0.23 0.68 16 18 O -0.36 -4.24 9.88 -55.14 -0.54 -4.78 16 19 C 0.07 0.55 5.92 37.16 0.22 0.77 16 20 C -0.08 -0.61 5.72 -27.88 -0.16 -0.77 16 21 C -0.08 -0.60 5.13 -104.62 -0.54 -1.14 16 22 C -0.11 -0.80 9.70 -39.58 -0.38 -1.18 16 23 C -0.12 -0.76 10.05 -39.58 -0.40 -1.16 16 24 C -0.12 -0.76 10.05 -39.58 -0.40 -1.16 16 25 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16 26 C -0.11 -0.79 9.70 -39.58 -0.38 -1.18 16 27 C -0.09 -1.51 5.95 -28.18 -0.17 -1.68 16 28 C 0.14 2.85 6.57 -3.53 -0.02 2.83 16 29 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.04 1.01 8.14 -51.92 -0.42 0.58 16 31 H 0.09 2.42 6.40 -51.93 -0.33 2.09 16 32 H 0.09 1.56 7.73 -52.48 -0.41 1.16 16 33 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 34 H 0.07 1.02 7.78 -51.93 -0.40 0.61 16 35 H 0.40 4.12 8.46 -40.82 -0.35 3.78 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 41 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 42 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 45 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 46 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 48 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 50 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 414.61 15.07 6.25 6.25 Total: -1.00 -32.90 414.61 -11.66 -44.55 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -8.21 Total: 1.20 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -3.64 Total: -4.39 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.25 Total: -49.47 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.78 Total: -14.56 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.90 -11.66 -44.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284994548.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.099 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds