Wall clock time and date at job start Wed Apr 1 2020 03:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 119.99902 * 2 1 4 4 H 1.48499 * 109.47570 * 270.00516 * 3 2 1 5 5 H 1.48500 * 109.47362 * 30.00706 * 3 2 1 6 6 H 1.48506 * 109.46962 * 150.00489 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00296 * 164.47185 * 7 2 1 9 9 N 1.36938 * 120.00085 * 344.47639 * 7 2 1 10 10 C 1.47112 * 121.51017 * 336.18389 * 9 7 2 11 11 C 1.50316 * 109.10903 * 223.15910 * 10 9 7 12 12 C 1.29459 * 123.65508 * 348.54409 * 11 10 9 13 13 C 1.50696 * 117.69855 * 181.13441 * 12 11 10 14 14 N 1.46504 * 109.46943 * 94.99994 * 13 12 11 15 15 C 1.34774 * 120.00062 * 180.02562 * 14 13 12 16 16 O 1.21288 * 120.00081 * 0.02562 * 15 14 13 17 17 C 1.50708 * 120.00183 * 179.97438 * 15 14 13 18 18 O 1.42897 * 109.47005 * 180.02562 * 17 15 14 19 19 C 1.42900 * 113.99560 * 180.02562 * 18 17 15 20 20 C 1.53004 * 109.46845 * 180.02562 * 19 18 17 21 21 C 1.50700 * 109.46989 * 180.02562 * 20 19 18 22 22 C 1.38231 * 119.99661 * 269.72521 * 21 20 19 23 23 C 1.38241 * 120.00003 * 179.76881 * 22 21 20 24 24 C 1.38241 * 119.99927 * 0.50455 * 23 22 21 25 25 C 1.38241 * 119.99714 * 359.74666 * 24 23 22 26 26 C 1.38230 * 120.00045 * 0.02562 * 25 24 23 27 27 C 1.49969 * 124.60715 * 1.16032 * 12 11 10 28 28 C 1.47337 * 121.37748 * 155.99297 * 9 7 2 29 29 H 0.97000 * 119.99856 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.71510 * 103.17151 * 10 9 7 31 31 H 1.08999 * 109.38607 * 342.95488 * 10 9 7 32 32 H 1.08004 * 118.17546 * 168.82104 * 11 10 9 33 33 H 1.08998 * 109.47286 * 214.99651 * 13 12 11 34 34 H 1.08996 * 109.47018 * 335.00571 * 13 12 11 35 35 H 0.97001 * 119.99882 * 359.97438 * 14 13 12 36 36 H 1.08998 * 109.46873 * 300.00008 * 17 15 14 37 37 H 1.08993 * 109.46453 * 59.99968 * 17 15 14 38 38 H 1.08994 * 109.47122 * 299.99863 * 19 18 17 39 39 H 1.09005 * 109.47278 * 60.00327 * 19 18 17 40 40 H 1.09006 * 109.46872 * 299.99313 * 20 19 18 41 41 H 1.08994 * 109.47385 * 59.99661 * 20 19 18 42 42 H 1.08001 * 120.00413 * 359.97438 * 22 21 20 43 43 H 1.07994 * 120.00270 * 180.23332 * 23 22 21 44 44 H 1.07995 * 120.00522 * 179.72765 * 24 23 22 45 45 H 1.07997 * 119.99858 * 179.97438 * 25 24 23 46 46 H 1.07998 * 120.00303 * 179.97438 * 26 25 24 47 47 H 1.09000 * 109.31763 * 101.26333 * 27 12 11 48 48 H 1.09005 * 109.31493 * 220.69788 * 27 12 11 49 49 H 1.08999 * 109.77655 * 358.61864 * 28 9 7 50 50 H 1.08997 * 109.77795 * 237.80877 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0606 -1.2192 -0.2509 9 7 1.3630 -2.3666 0.3163 10 6 0.1415 -2.3687 1.1361 11 6 0.2255 -3.4831 2.1414 12 6 1.1208 -4.4174 2.1037 13 6 1.0645 -5.4847 3.1660 14 7 0.3200 -6.6399 2.6587 15 6 0.1405 -7.7225 3.4411 16 8 0.5950 -7.7403 4.5654 17 6 -0.6259 -8.9107 2.9193 18 8 -0.6802 -9.9223 3.9271 19 6 -1.3884 -11.0989 3.5319 20 6 -1.3834 -12.1077 4.6822 21 6 -2.1297 -13.3487 4.2653 22 6 -3.4888 -13.4485 4.4972 23 6 -4.1744 -14.5849 4.1104 24 6 -3.4989 -15.6258 3.5011 25 6 -2.1388 -15.5281 3.2738 26 6 -1.4542 -14.3898 3.6564 27 6 2.2104 -4.5121 1.0776 28 6 1.8588 -3.6721 -0.1533 29 1 -0.4850 0.8401 0.0004 30 1 -0.7294 -2.5188 0.4978 31 1 0.0530 -1.4149 1.6560 32 1 -0.5044 -3.5081 2.9371 33 1 2.0774 -5.7914 3.4270 34 1 0.5648 -5.0906 4.0509 35 1 -0.0445 -6.6253 1.7598 36 1 -1.6387 -8.6036 2.6584 37 1 -0.1264 -9.3051 2.0345 38 1 -2.4168 -10.8374 3.2829 39 1 -0.9041 -11.5389 2.6601 40 1 -0.3550 -12.3692 4.9316 41 1 -1.8679 -11.6674 5.5537 42 1 -4.0157 -12.6373 4.9776 43 1 -5.2368 -14.6614 4.2882 44 1 -4.0336 -16.5155 3.2029 45 1 -1.6110 -16.3415 2.7982 46 1 -0.3916 -14.3136 3.4792 47 1 3.1434 -4.1482 1.5078 48 1 2.3357 -5.5531 0.7798 49 1 2.7472 -3.5296 -0.7686 50 1 1.0843 -4.1739 -0.7333 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284994548.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:20 Heat of formation + Delta-G solvation = -41.596573 kcal Electronic energy + Delta-G solvation = -27949.414421 eV Core-core repulsion = 23941.501268 eV Total energy + Delta-G solvation = -4007.913153 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.91909 -40.22470 -39.41077 -38.51950 -36.38733 -34.56392 -34.39801 -32.69164 -31.76246 -31.44836 -30.37072 -29.04268 -27.67576 -25.60241 -24.42559 -24.30748 -23.45387 -22.83288 -21.94354 -21.57608 -19.50820 -18.56649 -18.09722 -17.53175 -17.48660 -17.25380 -16.95016 -16.61251 -16.32685 -15.87654 -15.76964 -15.73152 -15.41737 -15.23856 -15.07346 -14.57468 -14.28427 -14.24065 -13.97285 -13.85323 -13.83543 -13.50628 -13.38112 -13.26540 -12.90609 -12.79053 -12.57742 -12.38054 -12.31692 -12.23741 -12.09948 -11.94446 -11.80190 -11.70070 -11.27752 -10.96387 -10.69861 -10.67793 -10.12809 -9.81263 -9.66043 -9.62563 -8.74573 -7.88483 -5.29052 0.41351 0.50802 1.14076 1.46956 1.49091 1.56928 1.58046 2.02920 2.51585 2.82967 3.09110 3.29198 3.62812 3.75788 3.89595 3.89715 3.97012 3.98071 4.17639 4.18876 4.19865 4.30448 4.32115 4.33298 4.45001 4.47441 4.54278 4.62924 4.65588 4.65809 4.75188 4.84786 4.92811 4.93761 4.96233 5.11352 5.18955 5.19318 5.22273 5.34202 5.41675 5.48990 5.58495 5.61827 5.64489 5.71651 5.77298 6.05570 6.12973 6.16757 6.34218 6.56100 7.13862 7.21269 7.84058 8.37656 9.20106 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.031500 B = 0.001362 C = 0.001354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.688608 B =20555.135699 C =20670.079583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.053 4.053 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.258 4.258 8 H 0.070 0.930 9 N -0.615 5.615 10 C 0.204 3.796 11 C -0.140 4.140 12 C -0.139 4.139 13 C 0.169 3.831 14 N -0.708 5.708 15 C 0.509 3.491 16 O -0.578 6.578 17 C 0.048 3.952 18 O -0.396 6.396 19 C 0.068 3.932 20 C -0.076 4.076 21 C -0.091 4.091 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.131 4.131 25 C -0.127 4.127 26 C -0.127 4.127 27 C -0.084 4.084 28 C 0.138 3.862 29 H 0.250 0.750 30 H 0.017 0.983 31 H 0.056 0.944 32 H 0.112 0.888 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.416 0.584 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.130 0.870 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.131 0.869 47 H 0.062 0.938 48 H 0.090 0.910 49 H 0.058 0.942 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.791 -31.046 4.859 32.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.248 4.248 3 Si 0.794 3.206 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.198 1.198 7 C -0.388 4.388 8 H 0.088 0.912 9 N -0.339 5.339 10 C 0.079 3.921 11 C -0.161 4.161 12 C -0.139 4.139 13 C 0.045 3.955 14 N -0.362 5.362 15 C 0.296 3.704 16 O -0.457 6.457 17 C -0.031 4.031 18 O -0.315 6.315 19 C -0.008 4.008 20 C -0.114 4.114 21 C -0.091 4.091 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.149 4.149 25 C -0.145 4.145 26 C -0.144 4.144 27 C -0.123 4.123 28 C 0.013 3.987 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.130 0.870 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.253 0.747 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.148 0.852 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.157 0.843 46 H 0.149 0.851 47 H 0.080 0.920 48 H 0.109 0.891 49 H 0.077 0.923 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.453 -30.902 5.838 32.104 hybrid contribution -0.066 1.399 -0.564 1.510 sum -6.519 -29.503 5.273 30.671 Atomic orbital electron populations 1.70156 1.06466 1.25766 1.56170 1.25703 0.96142 1.01241 1.01675 0.85291 0.77985 0.79722 0.77557 1.21076 1.22005 1.19773 1.19509 0.92587 0.85675 1.40996 0.91225 1.44432 1.29233 1.02150 1.58114 1.19432 0.87706 0.94992 0.89983 1.22955 0.98131 0.96112 0.98882 1.20587 0.98345 0.96528 0.98480 1.20209 0.96492 0.84257 0.94508 1.45893 1.56298 1.15248 1.18715 1.20916 0.80010 0.84381 0.85129 1.90709 1.51346 1.82286 1.21333 1.22303 1.01675 0.87148 0.91964 1.87946 1.76971 1.26811 1.39770 1.22620 0.96294 0.84439 0.97491 1.20407 1.01084 0.91868 0.98018 1.19762 0.94256 0.95515 0.99579 1.21318 0.93882 0.98876 1.00458 1.21452 1.00947 0.93639 0.98489 1.21505 0.94875 0.99517 0.98976 1.21454 0.94959 0.98224 0.99844 1.21319 1.00688 0.93679 0.98762 1.20701 0.96227 1.00434 0.94923 1.21156 0.97450 0.85774 0.94358 0.94138 0.96580 0.92560 0.87001 0.91424 0.92195 0.74724 0.87516 0.87164 0.91876 0.91678 0.90407 0.90526 0.85221 0.84386 0.84264 0.84306 0.85092 0.92002 0.89145 0.92299 0.95177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.75 11.07 21.65 0.24 -54.51 16 2 C -0.05 -2.92 5.01 84.86 0.43 -2.49 16 3 Si 0.97 44.66 29.58 68.60 2.03 46.69 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.26 -14.01 9.71 84.03 0.82 -13.19 16 8 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 9 N -0.62 -30.15 3.01 -703.12 -2.12 -32.26 16 10 C 0.20 9.61 5.25 85.40 0.45 10.06 16 11 C -0.14 -5.08 9.47 27.10 0.26 -4.82 16 12 C -0.14 -4.32 5.22 -15.14 -0.08 -4.40 16 13 C 0.17 4.58 5.66 85.63 0.48 5.06 16 14 N -0.71 -15.64 5.55 -466.78 -2.59 -18.23 16 15 C 0.51 12.70 7.91 87.66 0.69 13.39 16 16 O -0.58 -20.47 16.50 15.98 0.26 -20.20 16 17 C 0.05 0.80 6.42 71.24 0.46 1.26 16 18 O -0.40 -8.57 9.88 -129.94 -1.28 -9.85 16 19 C 0.07 0.99 5.92 71.98 0.43 1.41 16 20 C -0.08 -1.13 5.72 29.85 0.17 -0.96 16 21 C -0.09 -1.26 5.13 -19.87 -0.10 -1.36 16 22 C -0.13 -1.65 9.70 22.27 0.22 -1.44 16 23 C -0.13 -1.44 10.05 22.27 0.22 -1.21 16 24 C -0.13 -1.38 10.05 22.27 0.22 -1.16 16 25 C -0.13 -1.40 10.05 22.27 0.22 -1.18 16 26 C -0.13 -1.61 9.70 22.27 0.22 -1.39 16 27 C -0.08 -2.60 5.95 29.66 0.18 -2.43 16 28 C 0.14 5.30 6.57 86.26 0.57 5.87 16 29 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 30 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.06 3.04 6.40 -2.39 -0.02 3.03 16 32 H 0.11 3.63 7.73 -2.91 -0.02 3.61 16 33 H 0.07 1.89 8.11 -2.39 -0.02 1.87 16 34 H 0.06 1.75 7.78 -2.39 -0.02 1.73 16 35 H 0.42 7.03 8.46 -92.71 -0.78 6.25 16 36 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.08 1.20 8.09 -2.38 -0.02 1.18 16 41 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 42 H 0.13 1.40 8.06 -2.91 -0.02 1.37 16 43 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16 44 H 0.14 0.87 8.06 -2.91 -0.02 0.84 16 45 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 46 H 0.13 1.34 8.06 -2.91 -0.02 1.32 16 47 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 49 H 0.06 2.22 7.96 -2.39 -0.02 2.20 16 50 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -72.97 414.61 2.52 -70.45 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.14 Total: 16.89 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 5.84 Total: 1.02 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -4.47 Total: -105.00 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -1.02 Total: -30.05 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -72.97 2.52 -70.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284994548.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.854 kcal (2) G-P(sol) polarization free energy of solvation -72.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds