Wall clock time and date at job start Wed Apr 1 2020 02:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00049 * 2 1 4 4 H 1.48503 * 109.47042 * 273.06373 * 3 2 1 5 5 H 1.48500 * 109.47317 * 33.06472 * 3 2 1 6 6 H 1.48502 * 109.47224 * 153.06585 * 3 2 1 7 7 C 1.38809 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00192 * 341.59963 * 7 2 1 9 9 N 1.36936 * 119.99710 * 161.59606 * 7 2 1 10 10 C 1.46500 * 119.99658 * 126.53925 * 9 7 2 11 11 C 1.53000 * 109.47215 * 90.00371 * 10 9 7 12 12 C 1.52998 * 109.47536 * 180.02562 * 11 10 9 13 13 N 1.46503 * 109.47355 * 180.02562 * 12 11 10 14 14 C 1.34770 * 119.99778 * 180.02562 * 13 12 11 15 15 O 1.21276 * 120.00760 * 5.11443 * 14 13 12 16 16 C 1.50704 * 119.99835 * 184.84412 * 14 13 12 17 17 H 1.09007 * 109.43612 * 23.89470 * 16 14 13 18 18 C 1.53070 * 109.44027 * 143.81039 * 16 14 13 19 19 C 1.53408 * 108.29222 * 168.25328 * 18 16 14 20 20 O 1.42838 * 108.37254 * 295.25399 * 19 18 16 21 21 C 1.35847 * 117.85739 * 49.15212 * 20 19 18 22 22 C 1.39148 * 118.49643 * 162.98293 * 21 20 19 23 23 C 1.37962 * 120.21375 * 179.81698 * 22 21 20 24 24 C 1.38292 * 119.96185 * 359.97438 * 23 22 21 25 25 C 1.38104 * 119.97934 * 0.08229 * 24 23 22 26 26 C 1.38314 * 121.79050 * 342.88339 * 21 20 19 27 27 C 1.46497 * 120.00295 * 306.54152 * 9 7 2 28 28 C 1.53003 * 117.49923 * 2.15946 * 27 9 7 29 29 C 1.52998 * 117.50121 * 293.53369 * 27 9 7 30 30 H 0.97008 * 119.99921 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47797 * 330.00197 * 10 9 7 32 32 H 1.09006 * 109.47563 * 210.00024 * 10 9 7 33 33 H 1.09001 * 109.47198 * 59.99967 * 11 10 9 34 34 H 1.08998 * 109.47083 * 299.99913 * 11 10 9 35 35 H 1.08996 * 109.47254 * 59.99393 * 12 11 10 36 36 H 1.09008 * 109.46875 * 299.99909 * 12 11 10 37 37 H 0.96999 * 119.99717 * 359.97438 * 13 12 11 38 38 H 1.08996 * 109.70038 * 287.95234 * 18 16 14 39 39 H 1.09006 * 109.69565 * 48.55351 * 18 16 14 40 40 H 1.09000 * 109.68720 * 54.97352 * 19 18 16 41 41 H 1.08999 * 109.68620 * 175.50089 * 19 18 16 42 42 H 1.07998 * 119.88964 * 359.79205 * 22 21 20 43 43 H 1.08003 * 120.02460 * 180.02562 * 23 22 21 44 44 H 1.07998 * 120.01289 * 180.02562 * 24 23 22 45 45 H 1.08001 * 119.83705 * 179.97438 * 25 24 23 46 46 H 1.09008 * 115.55330 * 147.86437 * 27 9 7 47 47 H 1.09001 * 117.49606 * 0.02562 * 28 27 9 48 48 H 1.08999 * 117.49477 * 145.01564 * 28 27 9 49 49 H 1.09000 * 117.50214 * 214.97929 * 29 27 9 50 50 H 1.08999 * 117.49404 * 0.02562 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4329 2.0838 -1.3981 5 1 1.4816 2.6331 0.7639 6 1 3.5787 1.4223 0.6342 7 6 2.0102 -1.2022 0.0005 8 1 1.5116 -2.1134 0.2962 9 7 3.3270 -1.2327 -0.3739 10 6 4.3268 -1.8333 0.5126 11 6 4.4658 -3.3224 0.1898 12 6 5.5094 -3.9499 1.1160 13 7 5.6429 -5.3756 0.8064 14 6 6.5108 -6.1376 1.5011 15 8 7.1130 -5.6663 2.4423 16 6 6.7283 -7.5772 1.1120 17 1 6.4671 -7.7127 0.0624 18 6 8.1992 -7.9451 1.3223 19 6 8.3358 -9.4686 1.2066 20 8 7.6079 -10.0687 2.2792 21 6 6.3335 -9.6500 2.4939 22 6 5.4960 -10.4441 3.2713 23 6 4.1962 -10.0510 3.5151 24 6 3.7229 -8.8640 2.9864 25 6 4.5510 -8.0741 2.2135 26 6 5.8570 -8.4645 1.9644 27 6 3.7361 -0.6646 -1.6608 28 6 2.6534 -0.0068 -2.5188 29 6 3.2385 -1.3595 -2.9299 30 1 -0.4850 0.8401 0.0004 31 1 4.0118 -1.7142 1.5493 32 1 5.2869 -1.3386 0.3656 33 1 4.7809 -3.4416 -0.8468 34 1 3.5057 -3.8172 0.3369 35 1 5.1939 -3.8307 2.1525 36 1 6.4696 -3.4552 0.9694 37 1 5.1061 -5.7713 0.1021 38 1 8.8113 -7.4624 0.5604 39 1 8.5209 -7.6214 2.3123 40 1 7.9265 -9.8027 0.2532 41 1 9.3869 -9.7492 1.2734 42 1 5.8646 -11.3712 3.6847 43 1 3.5489 -10.6695 4.1193 44 1 2.7057 -8.5554 3.1771 45 1 4.1789 -7.1478 1.8013 46 1 4.7337 -0.2260 -1.6854 47 1 1.6369 0.0037 -2.1254 48 1 2.9386 0.8649 -3.1077 49 1 3.9086 -1.3777 -3.7894 50 1 2.6065 -2.2390 -2.8072 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316925964.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:11 Heat of formation + Delta-G solvation = -3.830152 kcal Electronic energy + Delta-G solvation = -29783.020255 eV Core-core repulsion = 25776.744776 eV Total energy + Delta-G solvation = -4006.275478 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.31931 -39.43391 -37.75585 -37.48264 -35.55913 -34.49627 -33.29795 -32.12769 -30.98209 -30.47141 -29.95956 -26.97772 -25.28752 -24.08100 -23.42400 -22.73858 -21.58086 -21.27596 -20.98971 -19.96264 -19.67301 -18.23583 -17.17425 -17.00559 -16.85921 -16.37858 -16.05555 -15.39365 -15.27623 -15.03623 -14.66992 -14.52545 -14.17053 -14.07566 -13.92010 -13.55566 -13.51526 -13.29645 -13.15158 -12.74491 -12.22742 -12.16612 -12.09614 -12.05361 -11.79008 -11.36999 -11.26329 -11.19004 -11.13384 -10.92815 -10.76993 -10.71686 -10.40037 -10.12524 -9.97700 -9.82117 -9.53149 -9.15930 -9.07751 -9.03753 -8.42349 -8.41048 -6.53712 -6.08353 -3.72807 1.01043 1.18361 2.49649 2.93501 3.09848 3.36326 3.45679 3.53168 3.53712 4.15899 4.29099 4.36686 4.48937 4.56627 4.76565 4.77584 4.83404 4.84087 4.85173 4.93114 5.12206 5.19231 5.20309 5.25330 5.28138 5.38302 5.46051 5.54313 5.71410 5.74095 5.77726 5.82654 5.98768 6.01368 6.01558 6.06958 6.16225 6.18414 6.30093 6.31268 6.45567 6.48384 6.50830 6.56634 6.68599 6.85806 6.98952 7.14147 7.29793 7.42760 8.04058 8.12381 8.44010 8.96962 9.59423 10.08837 11.02332 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017826 B = 0.002197 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.318444 B =12739.767790 C =13462.088205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.882 3.118 4 H -0.271 1.271 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.287 4.287 8 H 0.070 0.930 9 N -0.573 5.573 10 C 0.154 3.846 11 C -0.147 4.147 12 C 0.119 3.881 13 N -0.725 5.725 14 C 0.523 3.477 15 O -0.534 6.534 16 C -0.063 4.063 17 H 0.101 0.899 18 C -0.147 4.147 19 C 0.064 3.936 20 O -0.316 6.316 21 C 0.140 3.860 22 C -0.151 4.151 23 C -0.084 4.084 24 C -0.148 4.148 25 C -0.081 4.081 26 C -0.151 4.151 27 C 0.110 3.890 28 C -0.199 4.199 29 C -0.213 4.213 30 H 0.265 0.735 31 H 0.059 0.941 32 H 0.037 0.963 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.400 0.600 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.112 0.888 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.126 0.874 46 H 0.086 0.914 47 H 0.122 0.878 48 H 0.074 0.926 49 H 0.070 0.930 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.838 -19.457 0.334 23.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.710 3.290 4 H -0.197 1.197 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.415 4.415 8 H 0.088 0.912 9 N -0.292 5.292 10 C 0.028 3.972 11 C -0.187 4.187 12 C -0.005 4.005 13 N -0.377 5.377 14 C 0.308 3.692 15 O -0.410 6.410 16 C -0.084 4.084 17 H 0.119 0.881 18 C -0.185 4.185 19 C -0.011 4.011 20 O -0.230 6.230 21 C 0.095 3.905 22 C -0.169 4.169 23 C -0.102 4.102 24 C -0.166 4.166 25 C -0.099 4.099 26 C -0.152 4.152 27 C 0.002 3.998 28 C -0.237 4.237 29 C -0.254 4.254 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.235 0.765 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.084 0.916 41 H 0.130 0.870 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.144 0.856 46 H 0.104 0.896 47 H 0.140 0.860 48 H 0.092 0.908 49 H 0.088 0.912 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 14.227 -19.106 1.154 23.849 hybrid contribution -0.071 1.011 -0.714 1.239 sum 14.155 -18.095 0.440 22.978 Atomic orbital electron populations 1.69896 1.06316 1.27187 1.49999 1.25823 0.94968 0.98574 0.95164 0.86829 0.80380 0.83638 0.78177 1.19679 1.23121 1.19520 1.18513 0.84642 0.93579 1.44790 0.91243 1.43544 1.04756 1.67749 1.13128 1.20793 0.91948 0.89683 0.94784 1.22413 0.97848 0.99943 0.98508 1.21482 0.99895 0.78884 1.00241 1.46231 1.41991 1.10835 1.38624 1.20185 0.79383 0.87134 0.82542 1.90702 1.48546 1.74121 1.27634 1.20167 0.96169 0.91833 1.00281 0.88109 1.22172 0.94390 0.96362 1.05596 1.22993 0.96972 0.92131 0.88998 1.85991 1.23062 1.62648 1.51259 1.18603 0.83919 0.91998 0.95972 1.20587 0.93228 1.00570 1.02548 1.20984 0.94629 0.96293 0.98273 1.21072 1.00438 0.95467 0.99614 1.21059 0.92262 0.99405 0.97165 1.19335 0.95654 0.95538 1.04714 1.21295 0.94894 0.99823 0.83802 1.23518 1.01915 0.94487 1.03768 1.23356 1.05064 0.96890 1.00105 0.92499 0.92231 0.94428 0.91981 0.91254 0.91404 0.91815 0.76515 0.89286 0.88673 0.91566 0.87005 0.85109 0.85229 0.85448 0.85589 0.89645 0.86034 0.90801 0.91195 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.13 13.97 55.49 0.78 -25.35 16 2 C 0.06 1.58 3.59 -17.43 -0.06 1.52 16 3 Si 0.88 21.66 24.99 -169.99 -4.25 17.41 16 4 H -0.27 -6.37 5.86 56.52 0.33 -6.03 16 5 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.29 -7.59 9.21 -15.06 -0.14 -7.73 16 8 H 0.07 2.02 8.06 -52.49 -0.42 1.60 16 9 N -0.57 -12.82 2.08 -165.66 -0.34 -13.17 16 10 C 0.15 2.86 5.71 -4.04 -0.02 2.84 16 11 C -0.15 -2.22 5.65 -26.73 -0.15 -2.37 16 12 C 0.12 1.60 5.68 -4.04 -0.02 1.58 16 13 N -0.73 -8.41 4.87 -60.29 -0.29 -8.70 16 14 C 0.52 6.68 5.77 -10.99 -0.06 6.61 16 15 O -0.53 -8.96 16.09 5.56 0.09 -8.87 16 16 C -0.06 -0.63 2.70 -92.85 -0.25 -0.88 16 17 H 0.10 0.76 8.12 -51.92 -0.42 0.33 16 18 C -0.15 -1.30 5.36 -26.48 -0.14 -1.44 16 19 C 0.06 0.47 7.03 37.37 0.26 0.73 16 20 O -0.32 -3.29 10.27 -19.26 -0.20 -3.49 16 21 C 0.14 1.56 6.47 -39.22 -0.25 1.31 16 22 C -0.15 -1.50 9.94 -39.34 -0.39 -1.89 16 23 C -0.08 -0.77 10.04 -39.66 -0.40 -1.16 16 24 C -0.15 -1.49 10.04 -39.61 -0.40 -1.89 16 25 C -0.08 -0.90 9.10 -39.51 -0.36 -1.26 16 26 C -0.15 -1.69 5.42 -104.44 -0.57 -2.25 16 27 C 0.11 2.27 5.15 -67.93 -0.35 1.92 16 28 C -0.20 -4.29 6.73 -26.73 -0.18 -4.47 16 29 C -0.21 -4.10 10.37 -26.73 -0.28 -4.38 16 30 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.06 1.15 8.04 -51.93 -0.42 0.74 16 32 H 0.04 0.64 8.07 -51.93 -0.42 0.22 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.40 3.75 8.44 -40.82 -0.34 3.40 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.07 7.47 -51.93 -0.39 0.68 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 44 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.13 1.36 6.81 -52.49 -0.36 1.01 16 46 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 47 H 0.12 3.06 5.07 -51.93 -0.26 2.80 16 48 H 0.07 1.46 7.86 -51.93 -0.41 1.05 16 49 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 LS Contribution 398.15 15.07 6.00 6.00 Total: -1.00 -32.31 398.15 -10.13 -42.44 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -8.14 Total: 6.95 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -3.77 Total: -13.22 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.14 Total: -47.22 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.11 Total: -12.37 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.25 Total: 17.41 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.31 -10.13 -42.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316925964.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.611 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds