Wall clock time and date at job start Wed Apr 1 2020 02:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00049 * 2 1 4 4 H 1.48503 * 109.47042 * 273.06373 * 3 2 1 5 5 H 1.48500 * 109.47317 * 33.06472 * 3 2 1 6 6 H 1.48502 * 109.47224 * 153.06585 * 3 2 1 7 7 C 1.38809 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00192 * 341.59963 * 7 2 1 9 9 N 1.36936 * 119.99710 * 161.59606 * 7 2 1 10 10 C 1.46500 * 119.99658 * 126.53925 * 9 7 2 11 11 C 1.53000 * 109.47215 * 90.00371 * 10 9 7 12 12 C 1.52998 * 109.47536 * 180.02562 * 11 10 9 13 13 N 1.46503 * 109.47355 * 180.02562 * 12 11 10 14 14 C 1.34770 * 119.99778 * 180.02562 * 13 12 11 15 15 O 1.21276 * 120.00760 * 5.11443 * 14 13 12 16 16 C 1.50704 * 119.99835 * 184.84412 * 14 13 12 17 17 H 1.09007 * 109.43612 * 23.89470 * 16 14 13 18 18 C 1.53070 * 109.44027 * 143.81039 * 16 14 13 19 19 C 1.53408 * 108.29222 * 168.25328 * 18 16 14 20 20 O 1.42838 * 108.37254 * 295.25399 * 19 18 16 21 21 C 1.35847 * 117.85739 * 49.15212 * 20 19 18 22 22 C 1.39148 * 118.49643 * 162.98293 * 21 20 19 23 23 C 1.37962 * 120.21375 * 179.81698 * 22 21 20 24 24 C 1.38292 * 119.96185 * 359.97438 * 23 22 21 25 25 C 1.38104 * 119.97934 * 0.08229 * 24 23 22 26 26 C 1.38314 * 121.79050 * 342.88339 * 21 20 19 27 27 C 1.46497 * 120.00295 * 306.54152 * 9 7 2 28 28 C 1.53003 * 117.49923 * 2.15946 * 27 9 7 29 29 C 1.52998 * 117.50121 * 293.53369 * 27 9 7 30 30 H 0.97008 * 119.99921 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47797 * 330.00197 * 10 9 7 32 32 H 1.09006 * 109.47563 * 210.00024 * 10 9 7 33 33 H 1.09001 * 109.47198 * 59.99967 * 11 10 9 34 34 H 1.08998 * 109.47083 * 299.99913 * 11 10 9 35 35 H 1.08996 * 109.47254 * 59.99393 * 12 11 10 36 36 H 1.09008 * 109.46875 * 299.99909 * 12 11 10 37 37 H 0.96999 * 119.99717 * 359.97438 * 13 12 11 38 38 H 1.08996 * 109.70038 * 287.95234 * 18 16 14 39 39 H 1.09006 * 109.69565 * 48.55351 * 18 16 14 40 40 H 1.09000 * 109.68720 * 54.97352 * 19 18 16 41 41 H 1.08999 * 109.68620 * 175.50089 * 19 18 16 42 42 H 1.07998 * 119.88964 * 359.79205 * 22 21 20 43 43 H 1.08003 * 120.02460 * 180.02562 * 23 22 21 44 44 H 1.07998 * 120.01289 * 180.02562 * 24 23 22 45 45 H 1.08001 * 119.83705 * 179.97438 * 25 24 23 46 46 H 1.09008 * 115.55330 * 147.86437 * 27 9 7 47 47 H 1.09001 * 117.49606 * 0.02562 * 28 27 9 48 48 H 1.08999 * 117.49477 * 145.01564 * 28 27 9 49 49 H 1.09000 * 117.50214 * 214.97929 * 29 27 9 50 50 H 1.08999 * 117.49404 * 0.02562 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4329 2.0838 -1.3981 5 1 1.4816 2.6331 0.7639 6 1 3.5787 1.4223 0.6342 7 6 2.0102 -1.2022 0.0005 8 1 1.5116 -2.1134 0.2962 9 7 3.3270 -1.2327 -0.3739 10 6 4.3268 -1.8333 0.5126 11 6 4.4658 -3.3224 0.1898 12 6 5.5094 -3.9499 1.1160 13 7 5.6429 -5.3756 0.8064 14 6 6.5108 -6.1376 1.5011 15 8 7.1130 -5.6663 2.4423 16 6 6.7283 -7.5772 1.1120 17 1 6.4671 -7.7127 0.0624 18 6 8.1992 -7.9451 1.3223 19 6 8.3358 -9.4686 1.2066 20 8 7.6079 -10.0687 2.2792 21 6 6.3335 -9.6500 2.4939 22 6 5.4960 -10.4441 3.2713 23 6 4.1962 -10.0510 3.5151 24 6 3.7229 -8.8640 2.9864 25 6 4.5510 -8.0741 2.2135 26 6 5.8570 -8.4645 1.9644 27 6 3.7361 -0.6646 -1.6608 28 6 2.6534 -0.0068 -2.5188 29 6 3.2385 -1.3595 -2.9299 30 1 -0.4850 0.8401 0.0004 31 1 4.0118 -1.7142 1.5493 32 1 5.2869 -1.3386 0.3656 33 1 4.7809 -3.4416 -0.8468 34 1 3.5057 -3.8172 0.3369 35 1 5.1939 -3.8307 2.1525 36 1 6.4696 -3.4552 0.9694 37 1 5.1061 -5.7713 0.1021 38 1 8.8113 -7.4624 0.5604 39 1 8.5209 -7.6214 2.3123 40 1 7.9265 -9.8027 0.2532 41 1 9.3869 -9.7492 1.2734 42 1 5.8646 -11.3712 3.6847 43 1 3.5489 -10.6695 4.1193 44 1 2.7057 -8.5554 3.1771 45 1 4.1789 -7.1478 1.8013 46 1 4.7337 -0.2260 -1.6854 47 1 1.6369 0.0037 -2.1254 48 1 2.9386 0.8649 -3.1077 49 1 3.9086 -1.3777 -3.7894 50 1 2.6065 -2.2390 -2.8072 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316925964.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:10 Heat of formation + Delta-G solvation = -23.255585 kcal Electronic energy + Delta-G solvation = -29783.862605 eV Core-core repulsion = 25776.744776 eV Total energy + Delta-G solvation = -4007.117828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.11437 -40.41716 -39.15124 -38.47542 -36.77657 -35.33544 -34.83663 -34.02186 -31.77858 -31.36933 -31.22516 -28.00891 -26.74163 -25.12401 -24.60548 -23.60930 -23.19670 -22.56851 -21.97623 -21.49396 -20.71198 -19.02147 -18.76507 -18.07670 -17.76968 -17.26596 -17.14173 -16.76436 -16.49167 -16.35617 -15.92409 -15.59030 -15.24663 -15.14309 -14.98815 -14.89955 -14.71072 -14.27604 -14.22945 -13.89528 -13.70015 -13.61336 -13.39417 -12.95896 -12.86858 -12.75886 -12.52294 -12.40856 -12.30735 -12.12598 -12.08557 -11.85525 -11.84066 -11.66031 -11.56999 -11.27981 -10.97437 -10.82535 -10.44353 -10.14657 -9.83428 -9.18369 -8.40039 -8.16607 -5.82118 0.24310 0.40088 1.41515 1.45314 1.49490 1.57152 2.07031 2.34804 2.45942 2.74804 2.99591 3.19375 3.40896 3.41083 3.55097 3.66106 3.82102 4.05698 4.10261 4.12703 4.17269 4.19139 4.26708 4.35244 4.36157 4.44984 4.48003 4.48381 4.50832 4.56168 4.64221 4.66413 4.82809 4.88119 4.93752 4.94421 4.98156 5.01256 5.06810 5.26317 5.29306 5.33941 5.39414 5.40307 5.48897 5.54055 5.59019 5.79165 5.98599 6.27833 6.42568 6.46977 7.11177 7.14384 7.60319 8.10447 8.94783 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017826 B = 0.002197 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.318444 B =12739.767790 C =13462.088205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.938 3.062 4 H -0.251 1.251 5 H -0.316 1.316 6 H -0.264 1.264 7 C -0.274 4.274 8 H 0.027 0.973 9 N -0.585 5.585 10 C 0.148 3.852 11 C -0.125 4.125 12 C 0.130 3.870 13 N -0.715 5.715 14 C 0.524 3.476 15 O -0.578 6.578 16 C -0.059 4.059 17 H 0.130 0.870 18 C -0.145 4.145 19 C 0.062 3.938 20 O -0.329 6.329 21 C 0.126 3.874 22 C -0.160 4.160 23 C -0.082 4.082 24 C -0.160 4.160 25 C -0.099 4.099 26 C -0.165 4.165 27 C 0.101 3.899 28 C -0.219 4.219 29 C -0.189 4.189 30 H 0.264 0.736 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.413 0.587 38 H 0.110 0.890 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.137 0.863 42 H 0.147 0.853 43 H 0.157 0.843 44 H 0.138 0.862 45 H 0.122 0.878 46 H 0.118 0.882 47 H 0.081 0.919 48 H 0.095 0.905 49 H 0.110 0.890 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.436 -20.243 -1.317 26.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.764 3.236 4 H -0.175 1.175 5 H -0.244 1.244 6 H -0.188 1.188 7 C -0.403 4.403 8 H 0.045 0.955 9 N -0.306 5.306 10 C 0.022 3.978 11 C -0.165 4.165 12 C 0.006 3.994 13 N -0.367 5.367 14 C 0.311 3.689 15 O -0.458 6.458 16 C -0.080 4.080 17 H 0.148 0.852 18 C -0.183 4.183 19 C -0.013 4.013 20 O -0.243 6.243 21 C 0.081 3.919 22 C -0.178 4.178 23 C -0.100 4.100 24 C -0.178 4.178 25 C -0.117 4.117 26 C -0.166 4.166 27 C -0.006 4.006 28 C -0.257 4.257 29 C -0.229 4.229 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.250 0.750 38 H 0.128 0.872 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.154 0.846 42 H 0.164 0.836 43 H 0.174 0.826 44 H 0.156 0.844 45 H 0.140 0.860 46 H 0.135 0.865 47 H 0.099 0.901 48 H 0.114 0.886 49 H 0.128 0.872 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.848 -19.921 -0.537 26.096 hybrid contribution -0.897 1.150 -0.190 1.471 sum 15.951 -18.771 -0.727 24.644 Atomic orbital electron populations 1.70010 1.08015 1.27737 1.52709 1.26369 0.95331 1.01549 0.95313 0.85931 0.78984 0.79688 0.78964 1.17536 1.24443 1.18822 1.18271 0.86475 0.91957 1.43641 0.95526 1.43644 1.03781 1.68415 1.14721 1.20933 0.91878 0.91611 0.93333 1.22086 0.97401 0.97568 0.99463 1.21217 0.99401 0.80042 0.98783 1.46104 1.41820 1.10042 1.38728 1.20683 0.78448 0.88165 0.81638 1.90683 1.50293 1.75210 1.29565 1.20232 0.96905 0.89260 1.01609 0.85239 1.22167 0.93745 0.97765 1.04606 1.23269 0.98167 0.90762 0.89069 1.85971 1.22837 1.63073 1.52446 1.18838 0.84447 0.92322 0.96315 1.20910 0.93499 1.01127 1.02262 1.21307 0.94779 0.96067 0.97834 1.21327 1.00982 0.95902 0.99588 1.21177 0.92795 0.99678 0.98069 1.19482 0.95790 0.95996 1.05348 1.21572 0.95783 1.00087 0.83113 1.23440 1.00157 0.96820 1.05265 1.23316 1.04250 0.94707 1.00620 0.92708 0.93943 0.91844 0.90675 0.93210 0.93114 0.91174 0.75004 0.87190 0.91612 0.89642 0.84560 0.83566 0.82581 0.84411 0.86019 0.86451 0.90067 0.88633 0.87176 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.19 13.97 21.65 0.30 -56.88 16 2 C 0.01 0.73 3.59 84.86 0.30 1.03 16 3 Si 0.94 44.72 24.99 68.60 1.71 46.43 16 4 H -0.25 -11.04 5.86 99.48 0.58 -10.45 16 5 H -0.32 -15.57 7.11 99.48 0.71 -14.87 16 6 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.27 -14.88 9.21 84.03 0.77 -14.10 16 8 H 0.03 1.66 8.06 -2.91 -0.02 1.64 16 9 N -0.59 -25.69 2.08 -678.03 -1.41 -27.10 16 10 C 0.15 5.31 5.71 86.38 0.49 5.80 16 11 C -0.13 -3.66 5.65 30.59 0.17 -3.49 16 12 C 0.13 3.40 5.68 86.38 0.49 3.89 16 13 N -0.72 -15.83 4.87 -463.06 -2.26 -18.09 16 14 C 0.52 13.04 5.77 87.66 0.51 13.55 16 15 O -0.58 -19.56 16.09 -3.02 -0.05 -19.60 16 16 C -0.06 -1.10 2.70 -12.24 -0.03 -1.13 16 17 H 0.13 1.60 8.12 -2.38 -0.02 1.58 16 18 C -0.14 -2.34 5.36 30.75 0.16 -2.17 16 19 C 0.06 0.76 7.03 72.12 0.51 1.27 16 20 O -0.33 -6.43 10.27 -91.83 -0.94 -7.38 16 21 C 0.13 2.70 6.47 22.51 0.15 2.85 16 22 C -0.16 -3.00 9.94 22.42 0.22 -2.77 16 23 C -0.08 -1.41 10.04 22.22 0.22 -1.18 16 24 C -0.16 -3.16 10.04 22.25 0.22 -2.94 16 25 C -0.10 -2.19 9.10 22.32 0.20 -1.99 16 26 C -0.16 -3.58 5.42 -19.75 -0.11 -3.69 16 27 C 0.10 3.90 5.15 44.99 0.23 4.14 16 28 C -0.22 -8.98 6.73 30.60 0.21 -8.78 16 29 C -0.19 -6.70 10.37 30.60 0.32 -6.38 16 30 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 31 H 0.04 1.65 8.04 -2.39 -0.02 1.63 16 32 H 0.06 1.98 8.07 -2.38 -0.02 1.96 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.41 7.10 8.44 -92.71 -0.78 6.32 16 38 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.47 7.47 -2.38 -0.02 1.45 16 40 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 43 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 44 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 45 H 0.12 2.67 6.81 -2.91 -0.02 2.65 16 46 H 0.12 3.84 8.14 -2.38 -0.02 3.82 16 47 H 0.08 4.09 5.07 -2.39 -0.01 4.08 16 48 H 0.10 3.46 7.86 -2.39 -0.02 3.45 16 49 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 50 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -73.19 398.15 2.44 -70.75 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 0.03 Total: 27.96 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 5.05 Total: -16.09 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -3.36 Total: -102.07 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.99 Total: -26.98 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.71 Total: 46.43 kcal Total: -73.19 2.44 -70.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316925964.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.497 kcal (2) G-P(sol) polarization free energy of solvation -73.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds