Wall clock time and date at job start Wed Apr 1 2020 02:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99734 * 2 1 4 4 H 1.48496 * 109.47212 * 270.00228 * 3 2 1 5 5 H 1.48504 * 109.47008 * 29.99878 * 3 2 1 6 6 H 1.48493 * 109.47028 * 149.99811 * 3 2 1 7 7 C 1.38807 * 120.00577 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00543 * 157.87478 * 7 2 1 9 9 N 1.36939 * 119.99689 * 337.87318 * 7 2 1 10 10 C 1.46500 * 119.99955 * 323.31328 * 9 7 2 11 11 C 1.52999 * 109.47074 * 270.00042 * 10 9 7 12 12 C 1.53004 * 109.46960 * 179.97438 * 11 10 9 13 13 N 1.46495 * 109.47019 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99984 * 180.02562 * 13 12 11 15 15 O 1.21280 * 120.00186 * 5.10616 * 14 13 12 16 16 C 1.50702 * 120.00175 * 185.11302 * 14 13 12 17 17 H 1.08999 * 109.43246 * 335.80788 * 16 14 13 18 18 C 1.53070 * 109.43753 * 215.89664 * 16 14 13 19 19 C 1.53406 * 108.29402 * 191.78598 * 18 16 14 20 20 O 1.42828 * 108.37196 * 64.74431 * 19 18 16 21 21 C 1.35844 * 117.86157 * 310.85228 * 20 19 18 22 22 C 1.39147 * 118.50225 * 197.01645 * 21 20 19 23 23 C 1.37965 * 120.21760 * 180.17688 * 22 21 20 24 24 C 1.38290 * 119.96108 * 0.02562 * 23 22 21 25 25 C 1.38105 * 119.98139 * 359.91237 * 24 23 22 26 26 C 1.38377 * 121.80858 * 17.07418 * 21 20 19 27 27 C 1.46505 * 120.00106 * 143.31478 * 9 7 2 28 28 C 1.52997 * 117.49662 * 6.50472 * 27 9 7 29 29 C 1.52999 * 117.49869 * 297.84403 * 27 9 7 30 30 H 0.96998 * 120.00614 * 2.52861 * 1 2 3 31 31 H 1.09006 * 109.46856 * 149.99993 * 10 9 7 32 32 H 1.08993 * 109.47275 * 30.00197 * 10 9 7 33 33 H 1.08999 * 109.46956 * 60.00351 * 11 10 9 34 34 H 1.08996 * 109.47393 * 299.99722 * 11 10 9 35 35 H 1.09006 * 109.46757 * 60.00082 * 12 11 10 36 36 H 1.08995 * 109.47480 * 300.00753 * 12 11 10 37 37 H 0.97002 * 120.00407 * 0.02562 * 13 12 11 38 38 H 1.09008 * 109.69859 * 311.48692 * 18 16 14 39 39 H 1.09001 * 109.70492 * 72.04001 * 18 16 14 40 40 H 1.09005 * 109.68441 * 184.46495 * 19 18 16 41 41 H 1.08998 * 109.68473 * 305.02618 * 19 18 16 42 42 H 1.08000 * 119.88892 * 0.20678 * 22 21 20 43 43 H 1.08004 * 120.02069 * 180.02562 * 23 22 21 44 44 H 1.07994 * 120.01008 * 179.90234 * 24 23 22 45 45 H 1.08002 * 119.84591 * 180.02562 * 25 24 23 46 46 H 1.09005 * 115.55028 * 152.16929 * 27 9 7 47 47 H 1.09000 * 117.50229 * 359.97438 * 28 27 9 48 48 H 1.08997 * 117.50194 * 145.02374 * 28 27 9 49 49 H 1.09003 * 117.49648 * 214.98059 * 29 27 9 50 50 H 1.09002 * 117.49744 * 359.97171 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0306 -1.2363 -0.3528 9 7 1.4013 -2.3445 0.4457 10 6 0.4741 -2.2858 1.5784 11 6 1.2475 -2.4947 2.8819 12 6 0.2792 -2.4328 4.0649 13 7 1.0197 -2.6333 5.3130 14 6 0.3681 -2.6195 6.4927 15 8 -0.8414 -2.5339 6.5166 16 6 1.1426 -2.7102 7.7824 17 1 2.1006 -3.1958 7.5966 18 6 0.3446 -3.5303 8.7991 19 6 1.0009 -3.3613 10.1754 20 8 0.8777 -1.9936 10.5679 21 6 1.2397 -1.0404 9.6703 22 6 1.4721 0.2518 10.1313 23 6 1.8379 1.2482 9.2499 24 6 1.9740 0.9635 7.9035 25 6 1.7454 -0.3182 7.4426 26 6 1.3796 -1.3229 8.3229 27 6 1.6770 -3.6255 -0.2097 28 6 2.7657 -3.6492 -1.2844 29 6 1.2924 -3.7618 -1.6843 30 1 -0.4851 0.8392 -0.0371 31 1 -0.2782 -3.0676 1.4730 32 1 -0.0145 -1.3118 1.5979 33 1 1.9997 -1.7129 2.9872 34 1 1.7361 -3.4688 2.8624 35 1 -0.4733 -3.2143 3.9597 36 1 -0.2091 -1.4585 4.0842 37 1 1.9788 -2.7761 5.2903 38 1 -0.6837 -3.1703 8.8356 39 1 0.3556 -4.5820 8.5128 40 1 0.4980 -3.9988 10.9027 41 1 2.0548 -3.6325 10.1153 42 1 1.3662 0.4753 11.1826 43 1 2.0179 2.2499 9.6112 44 1 2.2588 1.7431 7.2126 45 1 1.8528 -0.5382 6.3906 46 1 1.5733 -4.5083 0.4212 47 1 3.2766 -2.7118 -1.5042 48 1 3.3779 -4.5478 -1.3609 49 1 0.9360 -4.7344 -2.0236 50 1 0.8339 -2.8986 -2.1667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316925965.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:14 Heat of formation + Delta-G solvation = -8.568758 kcal Electronic energy + Delta-G solvation = -29936.349400 eV Core-core repulsion = 25929.868440 eV Total energy + Delta-G solvation = -4006.480960 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.24323 -39.32171 -37.69379 -37.15698 -35.38165 -34.41461 -33.56514 -31.62108 -30.87599 -30.40419 -29.48382 -26.86071 -25.20283 -24.05525 -23.45952 -22.68022 -21.45319 -21.03602 -20.86053 -19.90844 -19.58971 -18.17289 -17.05199 -16.94081 -16.45335 -16.31014 -15.73766 -15.45794 -15.14286 -15.10110 -14.62563 -14.41950 -14.15239 -13.93767 -13.85182 -13.61302 -13.47034 -13.22363 -12.69431 -12.62803 -12.21256 -12.14604 -11.95214 -11.73830 -11.54716 -11.26227 -11.13114 -11.04194 -10.86730 -10.84341 -10.77068 -10.70501 -10.24814 -10.13110 -9.82232 -9.67219 -9.59415 -9.28968 -8.98120 -8.91100 -8.51787 -8.35565 -6.53965 -5.87658 -3.43095 1.07748 1.24897 2.60836 3.00504 3.20293 3.29801 3.38300 3.39975 3.60697 4.23177 4.36427 4.38626 4.43513 4.64468 4.83307 4.91155 4.92192 4.93256 4.98890 5.13566 5.18577 5.25876 5.26573 5.28443 5.32412 5.58809 5.61383 5.71548 5.79345 5.84624 5.89470 5.97297 6.08229 6.10895 6.23595 6.25289 6.33665 6.34854 6.37234 6.47804 6.57185 6.62963 6.64090 6.72109 7.01336 7.06225 7.20116 7.22096 7.56155 7.60332 7.77696 8.24713 8.45034 9.10820 9.73631 10.30806 11.12686 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012931 B = 0.002637 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.892845 B =10614.723795 C =12121.513274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.016 3.984 3 Si 0.896 3.104 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.264 4.264 8 H 0.064 0.936 9 N -0.551 5.551 10 C 0.152 3.848 11 C -0.145 4.145 12 C 0.120 3.880 13 N -0.725 5.725 14 C 0.521 3.479 15 O -0.534 6.534 16 C -0.063 4.063 17 H 0.100 0.900 18 C -0.148 4.148 19 C 0.064 3.936 20 O -0.316 6.316 21 C 0.140 3.860 22 C -0.152 4.152 23 C -0.084 4.084 24 C -0.148 4.148 25 C -0.080 4.080 26 C -0.150 4.150 27 C 0.122 3.878 28 C -0.199 4.199 29 C -0.222 4.222 30 H 0.257 0.743 31 H 0.028 0.972 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.399 0.601 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.066 0.934 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.990 -5.403 19.361 20.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.185 4.185 3 Si 0.725 3.275 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.394 4.394 8 H 0.082 0.918 9 N -0.267 5.267 10 C 0.026 3.974 11 C -0.186 4.186 12 C -0.004 4.004 13 N -0.376 5.376 14 C 0.306 3.694 15 O -0.410 6.410 16 C -0.084 4.084 17 H 0.118 0.882 18 C -0.186 4.186 19 C -0.011 4.011 20 O -0.230 6.230 21 C 0.095 3.905 22 C -0.170 4.170 23 C -0.102 4.102 24 C -0.166 4.166 25 C -0.098 4.098 26 C -0.151 4.151 27 C 0.013 3.987 28 C -0.238 4.238 29 C -0.263 4.263 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.233 0.767 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.129 0.871 41 H 0.084 0.916 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.146 0.854 46 H 0.104 0.896 47 H 0.114 0.886 48 H 0.091 0.909 49 H 0.087 0.913 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.885 -5.136 19.591 20.622 hybrid contribution 0.985 0.665 -0.540 1.305 sum 4.870 -4.472 19.051 20.166 Atomic orbital electron populations 1.69950 1.05581 1.25998 1.50997 1.25196 0.95004 0.98751 0.99571 0.86419 0.79537 0.83630 0.77962 1.21182 1.21369 1.20226 1.18979 0.94668 0.85104 1.40648 0.91800 1.43388 1.50878 1.01822 1.30639 1.20810 0.90515 1.03056 0.83064 1.22457 0.99126 1.01287 0.95688 1.21490 0.95228 1.01706 0.81929 1.46277 1.11869 1.73012 1.06430 1.20182 0.88132 0.76380 0.84753 1.90703 1.14000 1.48966 1.87352 1.20149 1.00084 0.94221 0.93958 0.88222 1.22176 1.01457 1.01093 0.93830 1.22989 1.00987 0.80413 0.96684 1.85984 1.81519 1.15264 1.40212 1.18617 0.95310 0.89230 0.87380 1.20572 1.05006 0.90757 1.00684 1.20974 0.97477 0.98670 0.93084 1.21074 1.02929 0.96737 0.95897 1.21079 0.96608 0.92568 0.99518 1.19327 1.07699 0.95382 0.92725 1.21205 1.00162 0.90250 0.87088 1.23045 0.91885 1.01630 1.07198 1.23347 0.97584 1.00848 1.04503 0.93308 0.95348 0.88312 0.91542 0.93122 0.91825 0.91462 0.76682 0.88668 0.89303 0.87057 0.91616 0.85152 0.85285 0.85504 0.85427 0.89603 0.88591 0.90891 0.91307 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.51 11.45 55.49 0.64 -23.87 16 2 C 0.02 0.42 4.94 -17.43 -0.09 0.33 16 3 Si 0.90 20.78 29.61 -169.99 -5.03 15.75 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.26 -6.83 8.60 -15.06 -0.13 -6.96 16 8 H 0.06 1.66 6.52 -52.49 -0.34 1.32 16 9 N -0.55 -13.00 2.77 -165.66 -0.46 -13.46 16 10 C 0.15 3.32 5.34 -4.04 -0.02 3.30 16 11 C -0.15 -2.53 5.65 -26.73 -0.15 -2.68 16 12 C 0.12 1.91 5.68 -4.04 -0.02 1.88 16 13 N -0.72 -9.50 4.85 -60.29 -0.29 -9.79 16 14 C 0.52 7.34 5.78 -10.98 -0.06 7.27 16 15 O -0.53 -9.73 16.07 5.56 0.09 -9.65 16 16 C -0.06 -0.68 2.72 -92.85 -0.25 -0.94 16 17 H 0.10 0.82 8.08 -51.93 -0.42 0.40 16 18 C -0.15 -1.42 5.35 -26.48 -0.14 -1.56 16 19 C 0.06 0.51 7.03 37.37 0.26 0.77 16 20 O -0.32 -3.52 10.27 -19.25 -0.20 -3.72 16 21 C 0.14 1.68 6.47 -39.19 -0.25 1.42 16 22 C -0.15 -1.63 9.94 -39.34 -0.39 -2.02 16 23 C -0.08 -0.85 10.04 -39.66 -0.40 -1.25 16 24 C -0.15 -1.67 10.04 -39.61 -0.40 -2.07 16 25 C -0.08 -0.99 9.10 -39.53 -0.36 -1.35 16 26 C -0.15 -1.83 5.42 -104.44 -0.57 -2.39 16 27 C 0.12 2.54 6.57 -67.93 -0.45 2.09 16 28 C -0.20 -3.85 9.82 -26.69 -0.26 -4.11 16 29 C -0.22 -4.49 10.31 -26.69 -0.28 -4.77 16 30 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 31 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 32 H 0.10 2.47 5.48 -51.93 -0.28 2.19 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.40 4.19 8.43 -40.82 -0.34 3.85 16 38 H 0.09 1.15 7.46 -51.92 -0.39 0.77 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 44 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.13 1.59 6.81 -52.49 -0.36 1.23 16 46 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 47 H 0.10 2.02 6.36 -51.93 -0.33 1.69 16 48 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 49 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 50 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 404.40 15.07 6.09 6.09 Total: -1.00 -31.27 404.40 -11.06 -42.33 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -7.94 Total: 9.34 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -3.96 Total: -13.02 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -0.12 Total: -47.12 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.11 Total: -13.36 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.27 -11.06 -42.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316925965.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.758 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds