Wall clock time and date at job start Wed Apr 1 2020 02:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47676 * 35.00410 * 10 9 7 12 12 C 1.53002 * 109.47093 * 155.00076 * 10 9 7 13 13 N 1.46507 * 109.46885 * 305.00142 * 12 10 9 14 14 C 1.34777 * 119.99649 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00231 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99821 * 180.02562 * 14 13 12 17 17 C 1.52999 * 109.47257 * 179.97438 * 16 14 13 18 18 H 1.09002 * 109.33869 * 305.31913 * 17 16 14 19 19 O 1.42730 * 109.33814 * 64.99962 * 17 16 14 20 20 C 1.43216 * 113.12046 * 172.01252 * 19 17 16 21 21 C 1.52963 * 108.47877 * 289.28790 * 20 19 17 22 22 C 1.50746 * 109.76966 * 49.15733 * 21 20 19 23 23 C 1.38592 * 118.76798 * 163.19430 * 22 21 20 24 24 C 1.38076 * 120.28019 * 179.79651 * 23 22 21 25 25 C 1.38255 * 119.86017 * 359.97438 * 24 23 22 26 26 C 1.38056 * 119.89629 * 0.09192 * 25 24 23 27 27 C 1.37907 * 121.35090 * 343.14262 * 22 21 20 28 28 C 1.52998 * 109.47575 * 275.00004 * 10 9 7 29 29 C 1.52998 * 117.49848 * 128.62404 * 28 10 9 30 30 C 1.52998 * 117.49691 * 59.99971 * 28 10 9 31 31 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47114 * 64.99446 * 12 10 9 34 34 H 1.08997 * 109.47676 * 184.99986 * 12 10 9 35 35 H 0.96998 * 120.00228 * 0.02562 * 13 12 10 36 36 H 1.08999 * 109.46791 * 300.00306 * 16 14 13 37 37 H 1.08997 * 109.47077 * 59.99663 * 16 14 13 38 38 H 1.09006 * 109.63381 * 48.98122 * 20 19 17 39 39 H 1.08994 * 109.63719 * 169.38514 * 20 19 17 40 40 H 1.08997 * 109.42945 * 169.24711 * 21 20 19 41 41 H 1.08999 * 109.42238 * 289.13211 * 21 20 19 42 42 H 1.07997 * 119.86225 * 359.80347 * 23 22 21 43 43 H 1.07991 * 120.06696 * 180.02562 * 24 23 22 44 44 H 1.07996 * 120.05125 * 180.12056 * 25 24 23 45 45 H 1.08000 * 119.84710 * 179.97438 * 26 25 24 46 46 H 1.09005 * 115.55023 * 274.33346 * 28 10 9 47 47 H 1.08997 * 117.50197 * 0.02562 * 29 28 10 48 48 H 1.09006 * 117.49682 * 145.02473 * 29 28 10 49 49 H 1.08995 * 117.49894 * 214.97809 * 30 28 10 50 50 H 1.09000 * 117.50005 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9689 -3.5505 0.5900 12 6 1.1811 -4.7521 0.6102 13 7 0.7344 -4.3354 1.9418 14 6 -0.0554 -5.1473 2.6723 15 8 -0.3967 -6.2225 2.2271 16 6 -0.5154 -4.7184 4.0418 17 6 -1.3935 -5.8133 4.6510 18 1 -2.2085 -6.0454 3.9655 19 8 -0.6073 -6.9852 4.8649 20 6 -1.3004 -8.0011 5.5988 21 6 -1.4529 -7.5341 7.0474 22 6 -1.9983 -6.1290 7.0754 23 6 -2.5389 -5.6468 8.2570 24 6 -3.0435 -4.3631 8.3189 25 6 -3.0089 -3.5551 7.1975 26 6 -2.4718 -4.0351 6.0198 27 6 -1.9669 -5.3247 5.9557 28 6 2.4222 -4.0356 -1.4364 29 6 3.8830 -4.3863 -1.7261 30 6 3.3013 -3.0611 -2.2228 31 1 -0.4850 0.8401 0.0004 32 1 0.3557 -2.3880 0.0005 33 1 0.3135 -4.9200 -0.0280 34 1 1.7559 -5.6745 0.6919 35 1 1.0064 -3.4749 2.2974 36 1 0.3519 -4.5504 4.6803 37 1 -1.0901 -3.7959 3.9597 38 1 -2.2853 -8.1622 5.1604 39 1 -0.7296 -8.9291 5.5681 40 1 -2.1381 -8.1993 7.5726 41 1 -0.4802 -7.5541 7.5389 42 1 -2.5655 -6.2778 9.1331 43 1 -3.4636 -3.9907 9.2414 44 1 -3.4009 -2.5498 7.2430 45 1 -2.4456 -3.4033 5.1442 46 1 1.6548 -4.5788 -1.9881 47 1 4.5847 -4.3475 -0.8930 48 1 4.0770 -5.1605 -2.4685 49 1 3.1127 -2.9635 -3.2919 50 1 3.6200 -2.1499 -1.7166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317030799.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:51 Heat of formation + Delta-G solvation = -25.123976 kcal Electronic energy + Delta-G solvation = -29893.921419 eV Core-core repulsion = 25886.722571 eV Total energy + Delta-G solvation = -4007.198848 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.64403 -39.16152 -37.68337 -37.35577 -34.60153 -33.82672 -33.34142 -32.35573 -31.00011 -30.10614 -28.86373 -27.62740 -24.63785 -23.96250 -23.52517 -22.49923 -21.73419 -21.57632 -20.19125 -20.05886 -19.37878 -17.60832 -17.30267 -16.64946 -16.41536 -15.84225 -15.59244 -15.38760 -15.12901 -14.79863 -14.48551 -14.36734 -14.20075 -13.81450 -13.75622 -13.38538 -13.30212 -13.14791 -12.96315 -12.55818 -12.40070 -12.27572 -12.01033 -11.80386 -11.43884 -11.35747 -11.15538 -11.03772 -10.88881 -10.85137 -10.73021 -10.69555 -10.13855 -9.93593 -9.70119 -9.62667 -9.40650 -9.27335 -8.99414 -8.93360 -8.76664 -8.52817 -7.05666 -5.83238 -3.12432 1.12750 1.18333 3.06571 3.37975 3.44425 3.45728 3.47835 3.63756 3.73891 4.41317 4.44168 4.49749 4.58965 4.62461 4.73995 4.91706 4.96355 5.08104 5.14671 5.21902 5.25430 5.26263 5.37120 5.42161 5.48622 5.51573 5.53848 5.61200 5.65840 5.72356 5.79371 5.81216 5.87805 5.89690 5.92728 6.04290 6.09393 6.19325 6.25859 6.33656 6.39148 6.44343 6.55737 6.62669 6.79057 6.79717 6.96887 7.00932 7.12393 7.63877 8.02677 8.33910 8.68458 9.46180 10.00670 10.37032 11.38599 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011493 B = 0.002701 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.739160 B =10364.801197 C =12422.266318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.902 3.098 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.716 5.716 10 C 0.193 3.807 11 H 0.055 0.945 12 C 0.121 3.879 13 N -0.715 5.715 14 C 0.514 3.486 15 O -0.544 6.544 16 C -0.134 4.134 17 C 0.150 3.850 18 H 0.080 0.920 19 O -0.355 6.355 20 C 0.060 3.940 21 C -0.116 4.116 22 C -0.073 4.073 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.121 4.121 26 C -0.108 4.108 27 C -0.112 4.112 28 C -0.159 4.159 29 C -0.196 4.196 30 C -0.157 4.157 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.409 0.591 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.054 0.946 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.129 0.871 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.079 0.921 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.645 -12.649 14.338 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.734 3.266 4 H -0.218 1.218 5 H -0.208 1.208 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.357 5.357 10 C 0.082 3.918 11 H 0.072 0.928 12 C -0.004 4.004 13 N -0.367 5.367 14 C 0.299 3.701 15 O -0.421 6.421 16 C -0.174 4.174 17 C 0.092 3.908 18 H 0.097 0.903 19 O -0.273 6.273 20 C -0.017 4.017 21 C -0.153 4.153 22 C -0.073 4.073 23 C -0.139 4.139 24 C -0.137 4.137 25 C -0.139 4.139 26 C -0.126 4.126 27 C -0.113 4.113 28 C -0.180 4.180 29 C -0.234 4.234 30 C -0.194 4.194 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.245 0.755 36 H 0.120 0.880 37 H 0.129 0.871 38 H 0.072 0.928 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.147 0.853 46 H 0.108 0.892 47 H 0.104 0.896 48 H 0.099 0.901 49 H 0.097 0.903 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.578 -13.275 13.947 19.584 hybrid contribution -0.040 1.581 0.182 1.592 sum -3.618 -11.694 14.129 18.694 Atomic orbital electron populations 1.69660 1.05032 1.25643 1.57390 1.24708 0.95435 0.97528 1.02923 0.86267 0.78732 0.84145 0.77485 1.21773 1.20797 1.21875 1.19161 0.90822 0.83865 1.42843 0.91170 1.42448 1.05813 0.99408 1.88068 1.20057 0.94366 0.86152 0.91186 0.92752 1.21552 0.98443 0.97399 0.83006 1.45960 1.50999 1.21845 1.17911 1.20306 0.78653 0.84528 0.86599 1.90676 1.56798 1.22369 1.72284 1.21793 1.01955 0.98777 0.94883 1.20516 0.93275 0.85537 0.91504 0.90263 1.88173 1.39434 1.24933 1.74809 1.22561 0.97830 0.91580 0.89733 1.21162 1.01855 0.93200 0.99081 1.19506 0.98695 0.95954 0.93104 1.21044 0.99501 0.96207 0.97167 1.21118 0.99859 0.94194 0.98532 1.21136 0.99757 0.99974 0.93024 1.21180 0.97991 0.94851 0.98616 1.20274 1.00318 0.94833 0.95857 1.23030 0.92149 1.03020 0.99849 1.22949 0.97288 0.99818 1.03349 1.22771 1.03450 0.94071 0.99081 0.93519 0.78057 0.91971 0.91783 0.75454 0.88044 0.87137 0.92751 0.88392 0.89914 0.89722 0.86135 0.86073 0.85762 0.85295 0.89165 0.89551 0.90106 0.90255 0.87716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.37 13.06 55.49 0.72 -25.65 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 3 Si 0.90 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.24 -5.92 8.63 -15.06 -0.13 -6.05 16 8 H 0.07 1.73 6.91 -52.49 -0.36 1.37 16 9 N -0.72 -16.15 4.54 -53.43 -0.24 -16.39 16 10 C 0.19 3.57 2.70 -67.93 -0.18 3.38 16 11 H 0.05 1.02 7.84 -51.93 -0.41 0.62 16 12 C 0.12 2.07 5.22 -4.04 -0.02 2.05 16 13 N -0.72 -11.83 5.39 -60.29 -0.32 -12.16 16 14 C 0.51 8.49 7.71 -10.98 -0.08 8.41 16 15 O -0.54 -10.63 15.41 -8.98 -0.14 -10.77 16 16 C -0.13 -1.77 5.11 -27.88 -0.14 -1.91 16 17 C 0.15 1.99 2.28 -27.91 -0.06 1.92 16 18 H 0.08 1.12 7.94 -51.93 -0.41 0.71 16 19 O -0.36 -5.04 9.66 -49.76 -0.48 -5.52 16 20 C 0.06 0.63 6.85 37.14 0.25 0.88 16 21 C -0.12 -1.04 6.00 -27.88 -0.17 -1.21 16 22 C -0.07 -0.78 5.78 -104.59 -0.60 -1.39 16 23 C -0.12 -1.14 9.67 -39.51 -0.38 -1.52 16 24 C -0.12 -1.09 10.05 -39.63 -0.40 -1.49 16 25 C -0.12 -1.19 10.05 -39.64 -0.40 -1.59 16 26 C -0.11 -1.19 9.08 -39.50 -0.36 -1.55 16 27 C -0.11 -1.33 5.46 -104.62 -0.57 -1.91 16 28 C -0.16 -2.78 5.36 -90.62 -0.49 -3.26 16 29 C -0.20 -3.00 10.18 -26.73 -0.27 -3.28 16 30 C -0.16 -2.78 9.78 -26.73 -0.26 -3.05 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.39 9.51 7.80 -40.82 -0.32 9.19 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.41 6.76 8.14 -40.82 -0.33 6.43 16 36 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.11 1.29 6.29 -51.93 -0.33 0.96 16 38 H 0.05 0.55 8.07 -51.93 -0.42 0.13 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 43 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.13 1.30 6.45 -52.49 -0.34 0.96 16 46 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 47 H 0.09 1.27 8.05 -51.93 -0.42 0.86 16 48 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 50 H 0.10 2.08 6.22 -51.93 -0.32 1.76 16 LS Contribution 403.75 15.07 6.08 6.08 Total: -1.00 -30.67 403.75 -11.63 -42.31 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: -7.86 Total: 17.73 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -4.37 Total: -11.91 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.16 Total: -54.20 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.62 Total: -16.29 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.67 -11.63 -42.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317030799.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.181 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds