Wall clock time and date at job start Wed Apr 1 2020 02:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47676 * 35.00410 * 10 9 7 12 12 C 1.53002 * 109.47093 * 155.00076 * 10 9 7 13 13 N 1.46507 * 109.46885 * 305.00142 * 12 10 9 14 14 C 1.34777 * 119.99649 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00231 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99821 * 180.02562 * 14 13 12 17 17 C 1.52999 * 109.47257 * 179.97438 * 16 14 13 18 18 H 1.09002 * 109.33869 * 305.31913 * 17 16 14 19 19 O 1.42730 * 109.33814 * 64.99962 * 17 16 14 20 20 C 1.43216 * 113.12046 * 172.01252 * 19 17 16 21 21 C 1.52963 * 108.47877 * 289.28790 * 20 19 17 22 22 C 1.50746 * 109.76966 * 49.15733 * 21 20 19 23 23 C 1.38592 * 118.76798 * 163.19430 * 22 21 20 24 24 C 1.38076 * 120.28019 * 179.79651 * 23 22 21 25 25 C 1.38255 * 119.86017 * 359.97438 * 24 23 22 26 26 C 1.38056 * 119.89629 * 0.09192 * 25 24 23 27 27 C 1.37907 * 121.35090 * 343.14262 * 22 21 20 28 28 C 1.52998 * 109.47575 * 275.00004 * 10 9 7 29 29 C 1.52998 * 117.49848 * 128.62404 * 28 10 9 30 30 C 1.52998 * 117.49691 * 59.99971 * 28 10 9 31 31 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47114 * 64.99446 * 12 10 9 34 34 H 1.08997 * 109.47676 * 184.99986 * 12 10 9 35 35 H 0.96998 * 120.00228 * 0.02562 * 13 12 10 36 36 H 1.08999 * 109.46791 * 300.00306 * 16 14 13 37 37 H 1.08997 * 109.47077 * 59.99663 * 16 14 13 38 38 H 1.09006 * 109.63381 * 48.98122 * 20 19 17 39 39 H 1.08994 * 109.63719 * 169.38514 * 20 19 17 40 40 H 1.08997 * 109.42945 * 169.24711 * 21 20 19 41 41 H 1.08999 * 109.42238 * 289.13211 * 21 20 19 42 42 H 1.07997 * 119.86225 * 359.80347 * 23 22 21 43 43 H 1.07991 * 120.06696 * 180.02562 * 24 23 22 44 44 H 1.07996 * 120.05125 * 180.12056 * 25 24 23 45 45 H 1.08000 * 119.84710 * 179.97438 * 26 25 24 46 46 H 1.09005 * 115.55023 * 274.33346 * 28 10 9 47 47 H 1.08997 * 117.50197 * 0.02562 * 29 28 10 48 48 H 1.09006 * 117.49682 * 145.02473 * 29 28 10 49 49 H 1.08995 * 117.49894 * 214.97809 * 30 28 10 50 50 H 1.09000 * 117.50005 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9689 -3.5505 0.5900 12 6 1.1811 -4.7521 0.6102 13 7 0.7344 -4.3354 1.9418 14 6 -0.0554 -5.1473 2.6723 15 8 -0.3967 -6.2225 2.2271 16 6 -0.5154 -4.7184 4.0418 17 6 -1.3935 -5.8133 4.6510 18 1 -2.2085 -6.0454 3.9655 19 8 -0.6073 -6.9852 4.8649 20 6 -1.3004 -8.0011 5.5988 21 6 -1.4529 -7.5341 7.0474 22 6 -1.9983 -6.1290 7.0754 23 6 -2.5389 -5.6468 8.2570 24 6 -3.0435 -4.3631 8.3189 25 6 -3.0089 -3.5551 7.1975 26 6 -2.4718 -4.0351 6.0198 27 6 -1.9669 -5.3247 5.9557 28 6 2.4222 -4.0356 -1.4364 29 6 3.8830 -4.3863 -1.7261 30 6 3.3013 -3.0611 -2.2228 31 1 -0.4850 0.8401 0.0004 32 1 0.3557 -2.3880 0.0005 33 1 0.3135 -4.9200 -0.0280 34 1 1.7559 -5.6745 0.6919 35 1 1.0064 -3.4749 2.2974 36 1 0.3519 -4.5504 4.6803 37 1 -1.0901 -3.7959 3.9597 38 1 -2.2853 -8.1622 5.1604 39 1 -0.7296 -8.9291 5.5681 40 1 -2.1381 -8.1993 7.5726 41 1 -0.4802 -7.5541 7.5389 42 1 -2.5655 -6.2778 9.1331 43 1 -3.4636 -3.9907 9.2414 44 1 -3.4009 -2.5498 7.2430 45 1 -2.4456 -3.4033 5.1442 46 1 1.6548 -4.5788 -1.9881 47 1 4.5847 -4.3475 -0.8930 48 1 4.0770 -5.1605 -2.4685 49 1 3.1127 -2.9635 -3.2919 50 1 3.6200 -2.1499 -1.7166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317030799.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:49 Heat of formation + Delta-G solvation = -42.045744 kcal Electronic energy + Delta-G solvation = -29894.655202 eV Core-core repulsion = 25886.722571 eV Total energy + Delta-G solvation = -4007.932631 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.55756 -40.44522 -39.00989 -38.37586 -36.06003 -35.09896 -34.73554 -33.22488 -32.67754 -31.05439 -30.03022 -28.95821 -25.88283 -25.16208 -24.71055 -23.77936 -23.02075 -22.62691 -21.47754 -20.98693 -20.79000 -19.25418 -18.45616 -17.81751 -17.40413 -16.98227 -16.84830 -16.59906 -16.28969 -16.05291 -15.97815 -15.40586 -15.31513 -15.18809 -14.90082 -14.76575 -14.49875 -14.18886 -14.10308 -13.79551 -13.44243 -13.24228 -13.07442 -12.94591 -12.85140 -12.68892 -12.62682 -12.38494 -12.36655 -12.23869 -11.98787 -11.86521 -11.71359 -11.53600 -11.05401 -10.98487 -10.81239 -10.72172 -10.54104 -9.95130 -9.71283 -9.54968 -8.97568 -7.86785 -5.14089 0.34999 0.43327 1.50471 1.52135 1.58672 1.73358 2.29254 2.59463 2.72458 2.86780 3.08998 3.48931 3.56400 3.67040 3.81561 3.83181 3.92019 4.00563 4.03490 4.13632 4.18247 4.23922 4.29807 4.32355 4.36910 4.41028 4.45109 4.58216 4.61809 4.63788 4.67407 4.70896 4.82441 4.89560 4.89992 4.90921 4.98609 5.07695 5.16683 5.17530 5.18972 5.40993 5.48689 5.51310 5.59170 5.59789 5.62359 5.63555 6.06950 6.20639 6.32951 6.65977 7.33089 7.41494 8.12157 8.38359 9.35902 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011493 B = 0.002701 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.739160 B =10364.801197 C =12422.266318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.958 3.042 4 H -0.289 1.289 5 H -0.273 1.273 6 H -0.304 1.304 7 C -0.217 4.217 8 H 0.076 0.924 9 N -0.722 5.722 10 C 0.198 3.802 11 H 0.057 0.943 12 C 0.130 3.870 13 N -0.714 5.714 14 C 0.512 3.488 15 O -0.576 6.576 16 C -0.127 4.127 17 C 0.155 3.845 18 H 0.059 0.941 19 O -0.382 6.382 20 C 0.051 3.949 21 C -0.109 4.109 22 C -0.086 4.086 23 C -0.123 4.123 24 C -0.119 4.119 25 C -0.130 4.130 26 C -0.123 4.123 27 C -0.131 4.131 28 C -0.174 4.174 29 C -0.163 4.163 30 C -0.173 4.173 31 H 0.247 0.753 32 H 0.373 0.627 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.410 0.590 36 H 0.112 0.888 37 H 0.124 0.876 38 H 0.051 0.949 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.140 0.860 45 H 0.129 0.871 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.106 0.894 49 H 0.086 0.914 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.697 -13.490 15.967 21.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.261 4.261 3 Si 0.789 3.211 4 H -0.216 1.216 5 H -0.199 1.199 6 H -0.231 1.231 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.362 5.362 10 C 0.089 3.911 11 H 0.074 0.926 12 C 0.005 3.995 13 N -0.365 5.365 14 C 0.299 3.701 15 O -0.456 6.456 16 C -0.166 4.166 17 C 0.096 3.904 18 H 0.077 0.923 19 O -0.301 6.301 20 C -0.025 4.025 21 C -0.146 4.146 22 C -0.086 4.086 23 C -0.141 4.141 24 C -0.137 4.137 25 C -0.148 4.148 26 C -0.141 4.141 27 C -0.131 4.131 28 C -0.195 4.195 29 C -0.200 4.200 30 C -0.211 4.211 31 H 0.056 0.944 32 H 0.205 0.795 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.246 0.754 36 H 0.130 0.870 37 H 0.142 0.858 38 H 0.070 0.930 39 H 0.131 0.869 40 H 0.126 0.874 41 H 0.108 0.892 42 H 0.164 0.836 43 H 0.165 0.835 44 H 0.158 0.842 45 H 0.147 0.853 46 H 0.111 0.889 47 H 0.114 0.886 48 H 0.124 0.876 49 H 0.104 0.896 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.581 -14.144 15.581 21.201 hybrid contribution -0.310 1.735 -0.318 1.791 sum -2.891 -12.409 15.263 19.882 Atomic orbital electron populations 1.69802 1.06316 1.25544 1.59988 1.25333 0.96062 1.00282 1.04438 0.85359 0.77732 0.80742 0.77233 1.21602 1.19860 1.23145 1.19434 0.91080 0.84600 1.39795 0.90645 1.42541 1.05296 1.00298 1.88027 1.20128 0.94041 0.84768 0.92139 0.92555 1.21418 0.97757 0.97266 0.83080 1.45973 1.51005 1.21847 1.17696 1.20848 0.77847 0.83887 0.87493 1.90653 1.57900 1.23769 1.73239 1.21801 1.02552 0.99453 0.92831 1.20367 0.92484 0.85395 0.92126 0.92296 1.88116 1.40532 1.25801 1.75664 1.22801 0.97742 0.91425 0.90531 1.21158 1.02679 0.92754 0.98034 1.19806 0.98880 0.96687 0.93269 1.21365 0.98628 0.96692 0.97426 1.21487 0.98985 0.94008 0.99202 1.21406 0.99544 1.00950 0.92865 1.21298 0.98617 0.94795 0.99359 1.20213 1.01665 0.95598 0.95645 1.22930 0.93941 1.03877 0.98751 1.23022 0.95162 0.98363 1.03482 1.22724 1.04777 0.94280 0.99288 0.94397 0.79473 0.93283 0.90731 0.75357 0.86993 0.85823 0.93039 0.86893 0.87384 0.89223 0.83597 0.83503 0.84210 0.85333 0.88917 0.88625 0.87564 0.89582 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -55.90 13.06 21.65 0.28 -55.62 16 2 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 3 Si 0.96 44.13 29.55 68.60 2.03 46.16 16 4 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 7 C -0.22 -10.89 8.63 84.03 0.72 -10.17 16 8 H 0.08 3.67 6.91 -2.91 -0.02 3.65 16 9 N -0.72 -32.72 4.54 -322.95 -1.47 -34.18 16 10 C 0.20 7.21 2.70 44.99 0.12 7.33 16 11 H 0.06 2.05 7.84 -2.39 -0.02 2.03 16 12 C 0.13 4.44 5.22 86.38 0.45 4.89 16 13 N -0.71 -23.80 5.39 -463.03 -2.49 -26.29 16 14 C 0.51 17.24 7.71 87.66 0.68 17.92 16 15 O -0.58 -23.07 15.41 10.86 0.17 -22.91 16 16 C -0.13 -3.41 5.11 29.85 0.15 -3.25 16 17 C 0.15 4.20 2.28 29.83 0.07 4.27 16 18 H 0.06 1.78 7.94 -2.39 -0.02 1.76 16 19 O -0.38 -10.96 9.66 -135.08 -1.30 -12.26 16 20 C 0.05 1.05 6.85 71.97 0.49 1.54 16 21 C -0.11 -1.78 6.00 29.85 0.18 -1.60 16 22 C -0.09 -1.75 5.78 -19.84 -0.11 -1.86 16 23 C -0.12 -2.02 9.67 22.32 0.22 -1.81 16 24 C -0.12 -1.90 10.05 22.24 0.22 -1.67 16 25 C -0.13 -2.38 10.05 22.23 0.22 -2.16 16 26 C -0.12 -2.67 9.08 22.32 0.20 -2.47 16 27 C -0.13 -3.08 5.46 -19.86 -0.11 -3.19 16 28 C -0.17 -5.85 5.36 -10.80 -0.06 -5.91 16 29 C -0.16 -4.53 10.18 30.60 0.31 -4.22 16 30 C -0.17 -5.95 9.78 30.60 0.30 -5.65 16 31 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 32 H 0.37 18.78 7.80 -92.71 -0.72 18.06 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.41 13.62 8.14 -92.71 -0.75 12.87 16 36 H 0.11 2.75 8.14 -2.39 -0.02 2.74 16 37 H 0.12 2.94 6.29 -2.39 -0.02 2.93 16 38 H 0.05 1.05 8.07 -2.38 -0.02 1.03 16 39 H 0.11 1.88 8.14 -2.39 -0.02 1.87 16 40 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 44 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 45 H 0.13 2.65 6.45 -2.91 -0.02 2.63 16 46 H 0.09 3.09 8.11 -2.38 -0.02 3.07 16 47 H 0.10 2.52 8.05 -2.39 -0.02 2.50 16 48 H 0.11 2.48 8.14 -2.38 -0.02 2.46 16 49 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 50 H 0.08 3.17 6.22 -2.39 -0.01 3.16 16 Total: -1.00 -66.35 403.75 1.22 -65.13 By element: Atomic # 1 Polarization: 51.72 SS G_CDS: -0.52 Total: 51.20 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 4.53 Total: -11.23 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -3.68 Total: -116.09 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -1.14 Total: -35.17 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -66.35 1.22 -65.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317030799.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.085 kcal (2) G-P(sol) polarization free energy of solvation -66.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds