Wall clock time and date at job start Wed Apr 1 2020 02:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99753 * 2 1 4 4 H 1.48495 * 109.47261 * 240.00305 * 3 2 1 5 5 H 1.48502 * 109.47182 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47128 * 120.00457 * 3 2 1 7 7 C 1.38811 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99722 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00094 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00240 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.46713 * 325.00127 * 10 9 7 12 12 C 1.52997 * 109.47384 * 205.00033 * 10 9 7 13 13 N 1.46496 * 109.47194 * 54.99585 * 12 10 9 14 14 C 1.34777 * 120.00271 * 179.97438 * 13 12 10 15 15 O 1.21278 * 119.99854 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00161 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.46912 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.33490 * 305.31538 * 17 16 14 19 19 O 1.42719 * 109.34266 * 65.00177 * 17 16 14 20 20 C 1.43211 * 113.12014 * 172.01103 * 19 17 16 21 21 C 1.52967 * 108.48247 * 289.28330 * 20 19 17 22 22 C 1.50745 * 109.76349 * 49.16092 * 21 20 19 23 23 C 1.38596 * 118.76882 * 163.19761 * 22 21 20 24 24 C 1.38064 * 120.28303 * 179.80000 * 23 22 21 25 25 C 1.38268 * 119.86040 * 359.97438 * 24 23 22 26 26 C 1.38048 * 119.89376 * 0.10034 * 25 24 23 27 27 C 1.37904 * 121.35275 * 343.13991 * 22 21 20 28 28 C 1.53002 * 109.47240 * 84.99672 * 10 9 7 29 29 C 1.53003 * 117.49668 * 8.75211 * 28 10 9 30 30 C 1.52998 * 117.49869 * 300.08963 * 28 10 9 31 31 H 0.96994 * 120.00313 * 359.97438 * 1 2 3 32 32 H 0.97004 * 120.00054 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47045 * 294.99712 * 12 10 9 34 34 H 1.09001 * 109.47375 * 174.99637 * 12 10 9 35 35 H 0.97005 * 120.00266 * 0.02562 * 13 12 10 36 36 H 1.09002 * 109.47152 * 60.00245 * 16 14 13 37 37 H 1.09001 * 109.46980 * 300.00345 * 16 14 13 38 38 H 1.09000 * 109.63683 * 48.98351 * 20 19 17 39 39 H 1.09001 * 109.63896 * 169.38112 * 20 19 17 40 40 H 1.08997 * 109.42542 * 169.24847 * 21 20 19 41 41 H 1.08996 * 109.42277 * 289.13147 * 21 20 19 42 42 H 1.08005 * 119.85708 * 359.79652 * 23 22 21 43 43 H 1.07997 * 120.07123 * 180.02562 * 24 23 22 44 44 H 1.08000 * 120.04714 * 180.12509 * 25 24 23 45 45 H 1.08000 * 119.84538 * 179.97438 * 26 25 24 46 46 H 1.09001 * 115.54716 * 154.41853 * 28 10 9 47 47 H 1.08995 * 117.50097 * 359.97438 * 29 28 10 48 48 H 1.08993 * 117.49530 * 145.02108 * 29 28 10 49 49 H 1.09000 * 117.49553 * 214.97676 * 30 28 10 50 50 H 1.08995 * 117.50037 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5504 -0.5900 12 6 1.1811 -4.7521 -0.6101 13 7 0.7344 -4.3355 -1.9417 14 6 -0.0546 -5.1477 -2.6726 15 8 -0.3951 -6.2234 -2.2278 16 6 -0.5136 -4.7193 -4.0426 17 6 -1.3908 -5.8147 -4.6522 18 1 -0.8460 -6.7588 -4.6456 19 8 -2.5824 -5.9511 -3.8787 20 6 -3.5449 -6.8259 -4.4781 21 6 -4.1258 -6.1346 -5.7128 22 6 -3.0077 -5.6006 -6.5714 23 6 -3.2816 -5.2580 -7.8861 24 6 -2.2820 -4.7620 -8.6990 25 6 -1.0022 -4.6059 -8.1993 26 6 -0.7282 -4.9484 -6.8903 27 6 -1.7307 -5.4484 -6.0735 28 6 2.4222 -4.0355 1.4365 29 6 1.8135 -3.1985 2.5634 30 6 3.2997 -3.0601 2.2235 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3880 0.0002 33 1 0.3136 -4.9201 0.0280 34 1 1.7560 -5.6745 -0.6919 35 1 1.0071 -3.4753 -2.2977 36 1 0.3542 -4.5513 -4.6805 37 1 -1.0887 -3.7970 -3.9612 38 1 -3.0602 -7.7565 -4.7734 39 1 -4.3413 -7.0382 -3.7648 40 1 -4.7130 -6.8513 -6.2869 41 1 -4.7661 -5.3102 -5.3991 42 1 -4.2813 -5.3796 -8.2764 43 1 -2.4993 -4.4957 -9.7228 44 1 -0.2184 -4.2163 -8.8319 45 1 0.2717 -4.8265 -6.5009 46 1 2.5635 -5.1006 1.6204 47 1 1.1541 -2.3778 2.2811 48 1 1.5548 -3.7129 3.4889 49 1 4.0180 -3.4834 2.9256 50 1 3.6180 -2.1487 1.7175 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317030803.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:53 Heat of formation + Delta-G solvation = -37.861650 kcal Electronic energy + Delta-G solvation = -30037.681173 eV Core-core repulsion = 26029.929978 eV Total energy + Delta-G solvation = -4007.751195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.54936 -40.44540 -39.12126 -38.38023 -35.85049 -35.01873 -34.73375 -33.21964 -32.57527 -31.04800 -30.07152 -29.00494 -25.85584 -25.22162 -24.73007 -23.94918 -23.01705 -22.59775 -21.30526 -20.98514 -20.46187 -19.21475 -18.44924 -17.85950 -17.40471 -16.97560 -16.76999 -16.57482 -16.33131 -16.28106 -15.90087 -15.40230 -15.30214 -15.24813 -14.84763 -14.62138 -14.44698 -14.21108 -14.10136 -13.76530 -13.43295 -13.28585 -13.05876 -12.86037 -12.81843 -12.65737 -12.59006 -12.57164 -12.36458 -12.14247 -11.95721 -11.85586 -11.57127 -11.53734 -11.03086 -10.98222 -10.74457 -10.60681 -10.53252 -9.93154 -9.70050 -9.54060 -8.97358 -7.86029 -5.13823 0.36114 0.44527 1.51064 1.52341 1.57393 1.74198 2.31676 2.60268 2.74243 2.87854 3.14795 3.48150 3.57320 3.66967 3.83426 3.90682 3.91757 4.00163 4.05015 4.14449 4.23485 4.28596 4.30942 4.33156 4.35532 4.42703 4.53227 4.60107 4.60814 4.63359 4.67870 4.72051 4.83195 4.89818 4.96074 4.97317 4.98426 5.08561 5.17540 5.20054 5.28613 5.44196 5.51686 5.60098 5.61796 5.63518 5.67940 5.69257 6.08073 6.22715 6.33362 6.67714 7.34814 7.41857 8.13086 8.38569 9.36099 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011998 B = 0.002644 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.082744 B =10588.902103 C =11883.409575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.066 4.066 3 Si 0.957 3.043 4 H -0.278 1.278 5 H -0.304 1.304 6 H -0.285 1.285 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.720 5.720 10 C 0.193 3.807 11 H 0.062 0.938 12 C 0.130 3.870 13 N -0.713 5.713 14 C 0.512 3.488 15 O -0.576 6.576 16 C -0.127 4.127 17 C 0.153 3.847 18 H 0.067 0.933 19 O -0.388 6.388 20 C 0.052 3.948 21 C -0.111 4.111 22 C -0.089 4.089 23 C -0.126 4.126 24 C -0.121 4.121 25 C -0.128 4.128 26 C -0.120 4.120 27 C -0.132 4.132 28 C -0.169 4.169 29 C -0.175 4.175 30 C -0.169 4.169 31 H 0.246 0.754 32 H 0.373 0.627 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.410 0.590 36 H 0.136 0.864 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.142 0.858 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.138 0.862 46 H 0.114 0.886 47 H 0.076 0.924 48 H 0.089 0.911 49 H 0.101 0.899 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.592 -13.370 -16.014 21.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.259 4.259 3 Si 0.788 3.212 4 H -0.204 1.204 5 H -0.231 1.231 6 H -0.211 1.211 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.360 5.360 10 C 0.084 3.916 11 H 0.080 0.920 12 C 0.005 3.995 13 N -0.365 5.365 14 C 0.299 3.701 15 O -0.456 6.456 16 C -0.167 4.167 17 C 0.095 3.905 18 H 0.085 0.915 19 O -0.307 6.307 20 C -0.024 4.024 21 C -0.148 4.148 22 C -0.089 4.089 23 C -0.144 4.144 24 C -0.139 4.139 25 C -0.146 4.146 26 C -0.138 4.138 27 C -0.132 4.132 28 C -0.190 4.190 29 C -0.212 4.212 30 C -0.206 4.206 31 H 0.055 0.945 32 H 0.206 0.794 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.246 0.754 36 H 0.154 0.846 37 H 0.118 0.882 38 H 0.074 0.926 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.102 0.898 42 H 0.160 0.840 43 H 0.164 0.836 44 H 0.163 0.837 45 H 0.156 0.844 46 H 0.132 0.868 47 H 0.095 0.905 48 H 0.108 0.892 49 H 0.120 0.880 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.707 -13.902 -15.523 21.013 hybrid contribution -0.002 1.542 0.103 1.545 sum -2.709 -12.360 -15.421 19.947 Atomic orbital electron populations 1.69797 1.06349 1.25572 1.59828 1.25310 0.95950 1.00232 1.04379 0.85458 0.77238 0.80552 0.77959 1.20423 1.23140 1.21137 1.19382 0.91086 0.84551 1.40031 0.90556 1.42526 1.05243 1.00293 1.87928 1.20126 0.93973 0.84816 0.92661 0.91986 1.21407 0.97791 0.97300 0.83012 1.45973 1.50962 1.21867 1.17679 1.20849 0.77422 0.84028 0.87810 1.90652 1.57321 1.24256 1.73366 1.21821 1.01354 0.99989 0.93501 1.20433 0.86183 0.97394 0.86479 0.91544 1.88148 1.27659 1.67695 1.47165 1.22778 0.91988 0.92170 0.95458 1.21155 0.96234 1.01552 0.95871 1.19795 0.94045 0.99714 0.95362 1.21347 1.00650 0.99608 0.92749 1.21495 0.93030 0.98477 1.00856 1.21436 0.97910 0.99869 0.95373 1.21321 0.99290 0.98708 0.94441 1.20253 0.94862 1.02145 0.95985 1.23073 1.04970 0.96720 0.94212 1.22766 0.96842 1.03116 0.98468 1.22845 0.93291 1.01172 1.03308 0.94469 0.79450 0.93670 0.90328 0.75363 0.84594 0.88239 0.92557 0.87393 0.87359 0.89834 0.83978 0.83569 0.83710 0.84427 0.86777 0.90526 0.89216 0.88039 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.18 13.06 21.65 0.28 -55.90 16 2 C -0.07 -3.54 5.50 84.86 0.47 -3.08 16 3 Si 0.96 44.21 29.55 68.60 2.03 46.24 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 7 C -0.22 -10.85 8.15 84.03 0.69 -10.17 16 8 H 0.08 3.67 6.91 -2.91 -0.02 3.65 16 9 N -0.72 -32.20 3.08 -322.95 -0.99 -33.19 16 10 C 0.19 6.91 2.86 44.99 0.13 7.04 16 11 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 12 C 0.13 4.36 5.22 86.38 0.45 4.81 16 13 N -0.71 -23.42 5.39 -463.07 -2.49 -25.91 16 14 C 0.51 17.03 7.71 87.66 0.68 17.70 16 15 O -0.58 -22.90 15.41 10.87 0.17 -22.73 16 16 C -0.13 -3.36 5.11 29.85 0.15 -3.21 16 17 C 0.15 4.12 2.28 29.84 0.07 4.19 16 18 H 0.07 1.87 7.94 -2.39 -0.02 1.85 16 19 O -0.39 -11.93 9.66 -135.08 -1.30 -13.24 16 20 C 0.05 1.17 6.85 71.97 0.49 1.66 16 21 C -0.11 -2.03 6.01 29.85 0.18 -1.85 16 22 C -0.09 -1.88 5.78 -19.84 -0.11 -1.99 16 23 C -0.13 -2.14 9.67 22.31 0.22 -1.93 16 24 C -0.12 -1.87 10.05 22.24 0.22 -1.65 16 25 C -0.13 -2.11 10.05 22.23 0.22 -1.88 16 26 C -0.12 -2.33 9.08 22.32 0.20 -2.13 16 27 C -0.13 -3.05 5.46 -19.86 -0.11 -3.16 16 28 C -0.17 -5.59 5.71 -10.79 -0.06 -5.65 16 29 C -0.17 -6.46 9.74 30.62 0.30 -6.16 16 30 C -0.17 -5.73 9.87 30.62 0.30 -5.43 16 31 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 32 H 0.37 18.87 7.80 -92.71 -0.72 18.15 16 33 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.41 13.40 8.14 -92.70 -0.75 12.65 16 36 H 0.14 2.66 6.30 -2.39 -0.02 2.65 16 37 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 38 H 0.06 1.18 8.07 -2.39 -0.02 1.16 16 39 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 44 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 45 H 0.14 2.19 6.45 -2.91 -0.02 2.18 16 46 H 0.11 3.20 8.11 -2.39 -0.02 3.18 16 47 H 0.08 3.54 6.68 -2.39 -0.02 3.52 16 48 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 49 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 50 H 0.08 3.07 6.22 -2.39 -0.01 3.06 16 Total: -1.00 -66.96 400.86 1.65 -65.31 By element: Atomic # 1 Polarization: 52.84 SS G_CDS: -0.51 Total: 52.32 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 4.48 Total: -12.89 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -3.21 Total: -115.01 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -1.14 Total: -35.97 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -66.96 1.65 -65.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317030803.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.447 kcal (2) G-P(sol) polarization free energy of solvation -66.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds