Wall clock time and date at job start Wed Apr 1 2020 02:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99817 * 2 1 4 4 H 1.48504 * 109.47012 * 269.99640 * 3 2 1 5 5 H 1.48500 * 109.47141 * 29.99669 * 3 2 1 6 6 H 1.48495 * 109.47146 * 149.99666 * 3 2 1 7 7 C 1.38813 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00261 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99601 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99607 * 180.02562 * 9 7 2 11 11 H 1.09009 * 109.46906 * 324.99795 * 10 9 7 12 12 C 1.52996 * 109.47002 * 205.00470 * 10 9 7 13 13 N 1.46500 * 109.47566 * 55.00074 * 12 10 9 14 14 C 1.34780 * 120.00298 * 180.02562 * 13 12 10 15 15 O 1.21285 * 119.99715 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99918 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.46852 * 179.97438 * 16 14 13 18 18 H 1.09001 * 109.33954 * 55.32347 * 17 16 14 19 19 O 1.42729 * 109.21864 * 295.71479 * 17 16 14 20 20 C 1.43216 * 113.12046 * 188.03614 * 19 17 16 21 21 C 1.52958 * 108.49025 * 70.69688 * 20 19 17 22 22 C 1.50745 * 109.77237 * 310.86284 * 21 20 19 23 23 C 1.38605 * 118.76284 * 196.60603 * 22 21 20 24 24 C 1.38070 * 120.27499 * 180.14138 * 23 22 21 25 25 C 1.38263 * 119.86231 * 0.27125 * 24 23 22 26 26 C 1.38052 * 119.89477 * 359.77356 * 25 24 23 27 27 C 1.37905 * 121.35399 * 16.87880 * 22 21 20 28 28 C 1.52992 * 109.47251 * 85.00191 * 10 9 7 29 29 C 1.53001 * 117.49997 * 8.61894 * 28 10 9 30 30 C 1.52993 * 60.00072 * 252.51037 * 29 28 10 31 31 H 0.97007 * 120.00236 * 0.02562 * 1 2 3 32 32 H 0.96993 * 120.00408 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.47194 * 294.99543 * 12 10 9 34 34 H 1.09004 * 109.47398 * 175.00294 * 12 10 9 35 35 H 0.96998 * 120.00010 * 359.97438 * 13 12 10 36 36 H 1.09001 * 109.47030 * 59.99959 * 16 14 13 37 37 H 1.08993 * 109.47413 * 299.99235 * 16 14 13 38 38 H 1.08994 * 109.63213 * 190.39951 * 20 19 17 39 39 H 1.09004 * 109.63299 * 311.00528 * 20 19 17 40 40 H 1.08997 * 109.42477 * 190.76936 * 21 20 19 41 41 H 1.09000 * 109.41984 * 70.95126 * 21 20 19 42 42 H 1.08000 * 119.86244 * 0.41221 * 23 22 21 43 43 H 1.07997 * 120.06552 * 180.11416 * 24 23 22 44 44 H 1.08002 * 120.05036 * 179.75117 * 25 24 23 45 45 H 1.08009 * 119.84749 * 180.02562 * 26 25 24 46 46 H 1.08995 * 115.55204 * 154.33083 * 28 10 9 47 47 H 1.09005 * 117.49855 * 0.02562 * 29 28 10 48 48 H 1.08994 * 117.49721 * 145.01625 * 29 28 10 49 49 H 1.09003 * 117.50028 * 252.50660 * 30 29 28 50 50 H 1.09004 * 117.49497 * 107.48911 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2020 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5646 -3.2065 0.5902 12 6 5.4990 -2.2588 0.6114 13 7 5.3610 -1.6641 1.9431 14 6 6.4586 -1.3861 2.6742 15 8 7.5607 -1.6288 2.2297 16 6 6.3165 -0.7738 4.0438 17 6 7.7034 -0.5620 4.6541 18 1 8.3092 0.0372 3.9743 19 8 8.3285 -1.8299 4.8514 20 6 9.5548 -1.7441 5.5861 21 6 9.2265 -1.3977 7.0393 22 6 8.2794 -0.2257 7.0827 23 6 8.1279 0.4655 8.2745 24 6 7.2666 1.5420 8.3502 25 6 6.5480 1.9285 7.2340 26 6 6.6977 1.2399 6.0469 27 6 7.5651 0.1613 5.9684 28 6 4.2589 -2.9749 -1.4359 29 6 3.8360 -2.0303 -2.5627 30 6 2.9758 -3.2490 -2.2229 31 1 -0.4851 0.8401 -0.0004 32 1 3.8646 -0.3620 0.0014 33 1 6.0785 -1.5913 -0.0264 34 1 6.0105 -3.2179 0.6931 35 1 4.4796 -1.4697 2.2984 36 1 5.7372 -1.4412 4.6818 37 1 5.8051 0.1852 3.9618 38 1 10.0735 -2.7018 5.5460 39 1 10.1849 -0.9647 5.1573 40 1 10.1450 -1.1412 7.5672 41 1 8.7610 -2.2578 7.5206 42 1 8.6892 0.1636 9.1464 43 1 7.1525 2.0793 9.2800 44 1 5.8704 2.7675 7.2909 45 1 6.1362 1.5427 5.1753 46 1 5.1115 -3.6285 -1.6201 47 1 3.4536 -1.0494 -2.2803 48 1 4.4106 -2.0621 -3.4883 49 1 2.9844 -4.0827 -2.9251 50 1 2.0271 -3.0700 -1.7169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317030808.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:00 Heat of formation + Delta-G solvation = -17.717860 kcal Electronic energy + Delta-G solvation = -30131.067978 eV Core-core repulsion = 26124.190283 eV Total energy + Delta-G solvation = -4006.877695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.72339 -39.29871 -37.84318 -37.48589 -34.54558 -33.90513 -33.28007 -32.42776 -31.20770 -30.24311 -29.12921 -28.00114 -24.73181 -24.01916 -23.36300 -22.62468 -21.87022 -21.44781 -20.25810 -20.06623 -19.18388 -17.85100 -17.49377 -16.75590 -16.50385 -15.95855 -15.67710 -15.53498 -15.21176 -14.85175 -14.64612 -14.46134 -14.29616 -13.94480 -13.69896 -13.51204 -13.34495 -13.11774 -12.81814 -12.65455 -12.57328 -12.40350 -12.22455 -11.95210 -11.62614 -11.42678 -11.22342 -11.11976 -10.98250 -10.81224 -10.79791 -10.58360 -10.26182 -9.78046 -9.66654 -9.59367 -9.48387 -9.21176 -9.04170 -9.00389 -8.83712 -8.67536 -7.39535 -5.85655 -3.22435 1.05850 1.11393 2.93367 3.28747 3.33417 3.38074 3.40103 3.52586 3.66304 4.37762 4.40715 4.49778 4.53509 4.55530 4.66260 4.85522 4.88074 5.00683 5.03787 5.14447 5.18865 5.22828 5.29045 5.32546 5.35244 5.41531 5.44767 5.58532 5.64785 5.68023 5.73926 5.76681 5.78298 5.82838 5.88043 5.97050 6.01684 6.18908 6.26552 6.30941 6.32604 6.37130 6.57833 6.65200 6.72720 6.85009 7.01012 7.04877 7.13045 7.87942 7.90895 8.32737 8.54753 9.10554 9.82572 10.02149 11.32063 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012692 B = 0.002838 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.628262 B = 9865.413318 C =11596.592345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.010 3.990 3 Si 0.878 3.122 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.093 0.907 9 N -0.743 5.743 10 C 0.198 3.802 11 H 0.066 0.934 12 C 0.118 3.882 13 N -0.719 5.719 14 C 0.513 3.487 15 O -0.540 6.540 16 C -0.136 4.136 17 C 0.150 3.850 18 H 0.079 0.921 19 O -0.355 6.355 20 C 0.060 3.940 21 C -0.116 4.116 22 C -0.072 4.072 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.110 4.110 27 C -0.113 4.113 28 C -0.178 4.178 29 C -0.165 4.165 30 C -0.170 4.170 31 H 0.260 0.740 32 H 0.363 0.637 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.409 0.591 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.127 0.873 46 H 0.089 0.911 47 H 0.109 0.891 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.149 -0.465 14.333 22.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.187 4.187 3 Si 0.709 3.291 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.111 0.889 9 N -0.386 5.386 10 C 0.088 3.912 11 H 0.083 0.917 12 C -0.007 4.007 13 N -0.372 5.372 14 C 0.299 3.701 15 O -0.418 6.418 16 C -0.175 4.175 17 C 0.092 3.908 18 H 0.097 0.903 19 O -0.273 6.273 20 C -0.017 4.017 21 C -0.154 4.154 22 C -0.072 4.072 23 C -0.138 4.138 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.127 4.127 27 C -0.113 4.113 28 C -0.199 4.199 29 C -0.203 4.203 30 C -0.207 4.207 31 H 0.070 0.930 32 H 0.196 0.804 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.245 0.755 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.145 0.855 46 H 0.107 0.893 47 H 0.128 0.872 48 H 0.089 0.911 49 H 0.091 0.909 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 17.590 -0.885 13.946 22.465 hybrid contribution 0.103 1.673 0.242 1.694 sum 17.694 0.788 14.188 22.693 Atomic orbital electron populations 1.69685 1.05087 1.25847 1.57069 1.24640 0.95108 0.96968 1.01939 0.86664 0.79140 0.85381 0.77951 1.21113 1.21862 1.20335 1.19017 0.80313 0.94584 1.43367 0.88920 1.42844 1.04105 1.01822 1.89834 1.19964 0.89770 0.89434 0.92062 0.91651 1.21592 0.98210 0.98059 0.82816 1.46012 1.09506 1.63622 1.18041 1.20331 0.84589 0.78641 0.86587 1.90684 1.25759 1.53101 1.72210 1.21806 0.97156 1.03669 0.94908 1.20505 0.93584 0.85259 0.91473 0.90327 1.88180 1.36748 1.27589 1.74772 1.22569 0.86973 1.02460 0.89688 1.21170 0.98588 0.96540 0.99055 1.19513 0.97726 0.96883 0.93052 1.21059 0.99480 0.96213 0.97077 1.21127 0.96757 0.97141 0.98590 1.21134 0.99733 1.00029 0.92994 1.21148 0.97965 0.95151 0.98485 1.20253 0.97876 0.97337 0.95865 1.23003 0.98270 1.03618 0.95043 1.22828 1.03236 0.97156 0.97032 1.22890 0.96472 0.98646 1.02727 0.93005 0.80391 0.91884 0.91510 0.75523 0.87825 0.87342 0.88330 0.92736 0.89868 0.89653 0.86059 0.86009 0.85769 0.85484 0.89333 0.87250 0.91098 0.90856 0.87310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.49 13.97 55.49 0.78 -26.71 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 3 Si 0.88 20.74 27.74 -169.99 -4.71 16.03 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.10 6.52 56.52 0.37 -5.73 16 7 C -0.24 -6.09 8.63 -15.06 -0.13 -6.22 16 8 H 0.09 2.53 7.14 -52.49 -0.37 2.15 16 9 N -0.74 -15.42 2.88 -53.43 -0.15 -15.57 16 10 C 0.20 3.47 2.86 -67.93 -0.19 3.27 16 11 H 0.07 1.19 8.08 -51.92 -0.42 0.77 16 12 C 0.12 1.89 5.21 -4.04 -0.02 1.87 16 13 N -0.72 -11.17 5.39 -60.29 -0.32 -11.50 16 14 C 0.51 8.02 7.70 -10.99 -0.08 7.94 16 15 O -0.54 -10.09 15.39 -9.75 -0.15 -10.24 16 16 C -0.14 -1.69 5.09 -27.89 -0.14 -1.83 16 17 C 0.15 1.89 2.29 -27.91 -0.06 1.83 16 18 H 0.08 1.05 7.96 -51.93 -0.41 0.64 16 19 O -0.35 -4.84 9.60 -50.53 -0.49 -5.32 16 20 C 0.06 0.60 6.85 37.14 0.25 0.86 16 21 C -0.12 -1.00 6.00 -27.88 -0.17 -1.16 16 22 C -0.07 -0.74 5.78 -104.59 -0.60 -1.34 16 23 C -0.12 -1.08 9.67 -39.51 -0.38 -1.47 16 24 C -0.12 -1.03 10.05 -39.63 -0.40 -1.43 16 25 C -0.12 -1.13 10.05 -39.64 -0.40 -1.53 16 26 C -0.11 -1.14 9.08 -39.50 -0.36 -1.50 16 27 C -0.11 -1.28 5.46 -104.62 -0.57 -1.85 16 28 C -0.18 -2.99 5.71 -90.62 -0.52 -3.50 16 29 C -0.17 -2.98 9.74 -26.73 -0.26 -3.24 16 30 C -0.17 -3.03 9.86 -26.74 -0.26 -3.30 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.36 7.69 5.66 -40.82 -0.23 7.46 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.41 6.26 8.14 -40.82 -0.33 5.92 16 36 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.11 1.16 6.33 -51.93 -0.33 0.83 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.53 8.07 -51.93 -0.42 0.11 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 45 H 0.13 1.19 6.47 -52.48 -0.34 0.85 16 46 H 0.09 1.32 8.11 -51.93 -0.42 0.90 16 47 H 0.11 2.29 6.68 -51.93 -0.35 1.94 16 48 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 50 H 0.11 2.25 6.23 -51.93 -0.32 1.93 16 LS Contribution 397.72 15.07 5.99 5.99 Total: -1.00 -31.30 397.72 -11.23 -42.53 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: -7.77 Total: 17.23 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -4.40 Total: -12.43 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.30 Total: -53.78 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.64 Total: -15.56 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.71 Total: 16.03 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.30 -11.23 -42.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317030808.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.808 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds