Wall clock time and date at job start Wed Apr 1 2020 02:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99817 * 2 1 4 4 H 1.48504 * 109.47012 * 269.99640 * 3 2 1 5 5 H 1.48500 * 109.47141 * 29.99669 * 3 2 1 6 6 H 1.48495 * 109.47146 * 149.99666 * 3 2 1 7 7 C 1.38813 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00261 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99601 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99607 * 180.02562 * 9 7 2 11 11 H 1.09009 * 109.46906 * 324.99795 * 10 9 7 12 12 C 1.52996 * 109.47002 * 205.00470 * 10 9 7 13 13 N 1.46500 * 109.47566 * 55.00074 * 12 10 9 14 14 C 1.34780 * 120.00298 * 180.02562 * 13 12 10 15 15 O 1.21285 * 119.99715 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99918 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.46852 * 179.97438 * 16 14 13 18 18 H 1.09001 * 109.33954 * 55.32347 * 17 16 14 19 19 O 1.42729 * 109.21864 * 295.71479 * 17 16 14 20 20 C 1.43216 * 113.12046 * 188.03614 * 19 17 16 21 21 C 1.52958 * 108.49025 * 70.69688 * 20 19 17 22 22 C 1.50745 * 109.77237 * 310.86284 * 21 20 19 23 23 C 1.38605 * 118.76284 * 196.60603 * 22 21 20 24 24 C 1.38070 * 120.27499 * 180.14138 * 23 22 21 25 25 C 1.38263 * 119.86231 * 0.27125 * 24 23 22 26 26 C 1.38052 * 119.89477 * 359.77356 * 25 24 23 27 27 C 1.37905 * 121.35399 * 16.87880 * 22 21 20 28 28 C 1.52992 * 109.47251 * 85.00191 * 10 9 7 29 29 C 1.53001 * 117.49997 * 8.61894 * 28 10 9 30 30 C 1.52993 * 60.00072 * 252.51037 * 29 28 10 31 31 H 0.97007 * 120.00236 * 0.02562 * 1 2 3 32 32 H 0.96993 * 120.00408 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.47194 * 294.99543 * 12 10 9 34 34 H 1.09004 * 109.47398 * 175.00294 * 12 10 9 35 35 H 0.96998 * 120.00010 * 359.97438 * 13 12 10 36 36 H 1.09001 * 109.47030 * 59.99959 * 16 14 13 37 37 H 1.08993 * 109.47413 * 299.99235 * 16 14 13 38 38 H 1.08994 * 109.63213 * 190.39951 * 20 19 17 39 39 H 1.09004 * 109.63299 * 311.00528 * 20 19 17 40 40 H 1.08997 * 109.42477 * 190.76936 * 21 20 19 41 41 H 1.09000 * 109.41984 * 70.95126 * 21 20 19 42 42 H 1.08000 * 119.86244 * 0.41221 * 23 22 21 43 43 H 1.07997 * 120.06552 * 180.11416 * 24 23 22 44 44 H 1.08002 * 120.05036 * 179.75117 * 25 24 23 45 45 H 1.08009 * 119.84749 * 180.02562 * 26 25 24 46 46 H 1.08995 * 115.55204 * 154.33083 * 28 10 9 47 47 H 1.09005 * 117.49855 * 0.02562 * 29 28 10 48 48 H 1.08994 * 117.49721 * 145.01625 * 29 28 10 49 49 H 1.09003 * 117.50028 * 252.50660 * 30 29 28 50 50 H 1.09004 * 117.49497 * 107.48911 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2020 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5646 -3.2065 0.5902 12 6 5.4990 -2.2588 0.6114 13 7 5.3610 -1.6641 1.9431 14 6 6.4586 -1.3861 2.6742 15 8 7.5607 -1.6288 2.2297 16 6 6.3165 -0.7738 4.0438 17 6 7.7034 -0.5620 4.6541 18 1 8.3092 0.0372 3.9743 19 8 8.3285 -1.8299 4.8514 20 6 9.5548 -1.7441 5.5861 21 6 9.2265 -1.3977 7.0393 22 6 8.2794 -0.2257 7.0827 23 6 8.1279 0.4655 8.2745 24 6 7.2666 1.5420 8.3502 25 6 6.5480 1.9285 7.2340 26 6 6.6977 1.2399 6.0469 27 6 7.5651 0.1613 5.9684 28 6 4.2589 -2.9749 -1.4359 29 6 3.8360 -2.0303 -2.5627 30 6 2.9758 -3.2490 -2.2229 31 1 -0.4851 0.8401 -0.0004 32 1 3.8646 -0.3620 0.0014 33 1 6.0785 -1.5913 -0.0264 34 1 6.0105 -3.2179 0.6931 35 1 4.4796 -1.4697 2.2984 36 1 5.7372 -1.4412 4.6818 37 1 5.8051 0.1852 3.9618 38 1 10.0735 -2.7018 5.5460 39 1 10.1849 -0.9647 5.1573 40 1 10.1450 -1.1412 7.5672 41 1 8.7610 -2.2578 7.5206 42 1 8.6892 0.1636 9.1464 43 1 7.1525 2.0793 9.2800 44 1 5.8704 2.7675 7.2909 45 1 6.1362 1.5427 5.1753 46 1 5.1115 -3.6285 -1.6201 47 1 3.4536 -1.0494 -2.2803 48 1 4.4106 -2.0621 -3.4883 49 1 2.9844 -4.0827 -2.9251 50 1 2.0271 -3.0700 -1.7169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317030808.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:59 Heat of formation + Delta-G solvation = -35.389204 kcal Electronic energy + Delta-G solvation = -30131.834265 eV Core-core repulsion = 26124.190283 eV Total energy + Delta-G solvation = -4007.643982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.57509 -40.50105 -39.23101 -38.39632 -35.91775 -35.07168 -34.75193 -33.25545 -32.94084 -31.17385 -30.29602 -29.13250 -25.81861 -25.01449 -24.71361 -23.97785 -23.05896 -22.62057 -21.35226 -20.99901 -20.68428 -19.60287 -18.48600 -17.83368 -17.43706 -17.05427 -16.88073 -16.60143 -16.37012 -16.25359 -15.94863 -15.61179 -15.29477 -15.13969 -14.81520 -14.57517 -14.53406 -14.34746 -14.19815 -14.08860 -13.46500 -13.42485 -13.13346 -12.99910 -12.90341 -12.63832 -12.62990 -12.49877 -12.38135 -12.11853 -12.03355 -11.88004 -11.62286 -11.54947 -11.08510 -11.03897 -10.79511 -10.64422 -10.55077 -9.98812 -9.72805 -9.56346 -9.31268 -7.95483 -5.28522 0.33619 0.41854 1.39105 1.42355 1.48570 1.70807 2.25587 2.51590 2.71222 2.85600 3.08465 3.37378 3.52463 3.63555 3.66179 3.81372 3.88627 3.91173 4.01488 4.12151 4.20799 4.24731 4.29391 4.31027 4.31655 4.41381 4.48918 4.54760 4.59826 4.61641 4.66405 4.68692 4.81002 4.88371 4.89260 4.96741 4.97557 5.06276 5.15967 5.16489 5.21784 5.45427 5.49592 5.57559 5.58316 5.60896 5.61334 5.88707 6.05445 6.19560 6.26912 6.62203 7.12865 7.30215 7.86700 8.06281 9.25688 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012692 B = 0.002838 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.628262 B = 9865.413318 C =11596.592345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.056 4.056 3 Si 0.939 3.061 4 H -0.290 1.290 5 H -0.302 1.302 6 H -0.250 1.250 7 C -0.206 4.206 8 H 0.064 0.936 9 N -0.739 5.739 10 C 0.198 3.802 11 H 0.061 0.939 12 C 0.127 3.873 13 N -0.719 5.719 14 C 0.513 3.487 15 O -0.572 6.572 16 C -0.130 4.130 17 C 0.154 3.846 18 H 0.062 0.938 19 O -0.382 6.382 20 C 0.052 3.948 21 C -0.110 4.110 22 C -0.087 4.087 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.130 4.130 26 C -0.122 4.122 27 C -0.131 4.131 28 C -0.165 4.165 29 C -0.170 4.170 30 C -0.176 4.176 31 H 0.254 0.746 32 H 0.364 0.636 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.411 0.589 36 H 0.112 0.888 37 H 0.126 0.874 38 H 0.112 0.888 39 H 0.052 0.948 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.132 0.868 46 H 0.121 0.879 47 H 0.077 0.923 48 H 0.097 0.903 49 H 0.100 0.900 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.491 -0.413 15.689 25.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.247 4.247 3 Si 0.769 3.231 4 H -0.217 1.217 5 H -0.230 1.230 6 H -0.174 1.174 7 C -0.337 4.337 8 H 0.082 0.918 9 N -0.382 5.382 10 C 0.089 3.911 11 H 0.079 0.921 12 C 0.003 3.997 13 N -0.371 5.371 14 C 0.300 3.700 15 O -0.451 6.451 16 C -0.170 4.170 17 C 0.096 3.904 18 H 0.080 0.920 19 O -0.301 6.301 20 C -0.024 4.024 21 C -0.147 4.147 22 C -0.087 4.087 23 C -0.142 4.142 24 C -0.138 4.138 25 C -0.148 4.148 26 C -0.140 4.140 27 C -0.131 4.131 28 C -0.186 4.186 29 C -0.208 4.208 30 C -0.213 4.213 31 H 0.063 0.937 32 H 0.198 0.802 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.247 0.753 36 H 0.130 0.870 37 H 0.144 0.856 38 H 0.130 0.870 39 H 0.071 0.929 40 H 0.125 0.875 41 H 0.107 0.893 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.158 0.842 45 H 0.149 0.851 46 H 0.139 0.861 47 H 0.096 0.904 48 H 0.115 0.885 49 H 0.118 0.882 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 19.986 -0.860 15.313 25.193 hybrid contribution -0.590 1.539 -0.172 1.657 sum 19.396 0.679 15.141 24.615 Atomic orbital electron populations 1.69853 1.07005 1.26189 1.60308 1.25268 0.95693 1.00329 1.03418 0.85650 0.78880 0.81057 0.77556 1.21740 1.22969 1.17402 1.18882 0.81978 0.93095 1.39721 0.91818 1.42758 1.02556 1.03275 1.89632 1.20085 0.90281 0.87754 0.92963 0.92149 1.21458 0.96682 0.98639 0.82944 1.46033 1.09675 1.63523 1.17885 1.20821 0.83881 0.77923 0.87381 1.90667 1.26875 1.54459 1.73114 1.21838 0.97779 1.04407 0.92938 1.20392 0.93047 0.84947 0.92062 0.92042 1.88124 1.38115 1.28272 1.75587 1.22790 0.85942 1.03258 0.90426 1.21162 0.99357 0.96115 0.98093 1.19807 0.97967 0.97592 0.93298 1.21365 0.99530 0.95953 0.97327 1.21487 0.95970 0.96976 0.99329 1.21413 1.00111 1.00409 0.92845 1.21299 0.98173 0.95277 0.99289 1.20217 0.99212 0.98044 0.95641 1.23010 0.98609 1.03233 0.93712 1.22784 1.03750 0.95571 0.98667 1.22815 0.95228 0.99714 1.03571 0.93692 0.80206 0.92263 0.90312 0.75325 0.86993 0.85577 0.86979 0.92922 0.87478 0.89324 0.83742 0.83619 0.84175 0.85067 0.86149 0.90429 0.88481 0.88154 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.07 13.97 21.65 0.30 -59.76 16 2 C -0.06 -3.05 5.50 84.86 0.47 -2.59 16 3 Si 0.94 43.21 27.74 68.60 1.90 45.12 16 4 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.25 -10.17 6.52 99.48 0.65 -9.52 16 7 C -0.21 -10.46 8.63 84.03 0.73 -9.73 16 8 H 0.06 3.60 7.14 -2.91 -0.02 3.58 16 9 N -0.74 -30.17 2.88 -322.94 -0.93 -31.10 16 10 C 0.20 6.67 2.86 44.99 0.13 6.80 16 11 H 0.06 2.14 8.08 -2.38 -0.02 2.12 16 12 C 0.13 3.85 5.21 86.38 0.45 4.30 16 13 N -0.72 -21.34 5.39 -463.06 -2.50 -23.83 16 14 C 0.51 15.55 7.70 87.66 0.67 16.22 16 15 O -0.57 -21.01 15.39 11.58 0.18 -20.83 16 16 C -0.13 -3.12 5.09 29.85 0.15 -2.97 16 17 C 0.15 3.82 2.29 29.83 0.07 3.89 16 18 H 0.06 1.68 7.96 -2.39 -0.02 1.66 16 19 O -0.38 -10.28 9.60 -134.35 -1.29 -11.57 16 20 C 0.05 1.00 6.85 71.97 0.49 1.49 16 21 C -0.11 -1.69 6.00 29.85 0.18 -1.51 16 22 C -0.09 -1.64 5.78 -19.84 -0.11 -1.76 16 23 C -0.12 -1.92 9.67 22.32 0.22 -1.70 16 24 C -0.12 -1.78 10.05 22.24 0.22 -1.56 16 25 C -0.13 -2.18 10.05 22.23 0.22 -1.96 16 26 C -0.12 -2.40 9.08 22.32 0.20 -2.20 16 27 C -0.13 -2.84 5.46 -19.86 -0.11 -2.95 16 28 C -0.16 -5.17 5.71 -10.80 -0.06 -5.23 16 29 C -0.17 -5.87 9.74 30.59 0.30 -5.57 16 30 C -0.18 -6.09 9.86 30.59 0.30 -5.79 16 31 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 32 H 0.36 14.89 5.66 -92.71 -0.52 14.37 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.41 12.01 8.14 -92.71 -0.75 11.25 16 36 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.13 2.53 6.33 -2.39 -0.02 2.51 16 38 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.05 1.00 8.07 -2.38 -0.02 0.98 16 40 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 43 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 44 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 45 H 0.13 2.31 6.47 -2.91 -0.02 2.29 16 46 H 0.12 3.12 8.11 -2.39 -0.02 3.10 16 47 H 0.08 3.20 6.68 -2.38 -0.02 3.19 16 48 H 0.10 2.83 8.14 -2.39 -0.02 2.82 16 49 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 50 H 0.07 3.04 6.23 -2.39 -0.01 3.03 16 Total: -1.00 -69.33 397.72 1.81 -67.52 By element: Atomic # 1 Polarization: 47.66 SS G_CDS: -0.38 Total: 47.28 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 4.52 Total: -12.81 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -3.12 Total: -114.70 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -1.11 Total: -32.41 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.90 Total: 45.12 kcal Total: -69.33 1.81 -67.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317030808.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.128 kcal (2) G-P(sol) polarization free energy of solvation -69.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds