Wall clock time and date at job start Wed Apr 1 2020 02:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99618 * 2 1 4 4 H 1.48500 * 109.46978 * 269.99329 * 3 2 1 5 5 H 1.48496 * 109.47403 * 29.99456 * 3 2 1 6 6 H 1.48500 * 109.47024 * 149.99781 * 3 2 1 7 7 C 1.38812 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99689 * 359.97438 * 7 2 1 9 9 N 1.36937 * 120.00172 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00096 * 179.72095 * 9 7 2 11 11 C 1.53003 * 109.47003 * 180.27352 * 10 9 7 12 12 H 1.08995 * 109.50058 * 305.06838 * 11 10 9 13 13 C 1.53045 * 109.49232 * 65.16931 * 11 10 9 14 14 C 1.53046 * 109.53149 * 181.31555 * 13 11 10 15 15 C 1.53188 * 109.31012 * 298.62900 * 14 13 11 16 16 N 1.46928 * 108.77661 * 54.64087 * 15 14 13 17 17 C 1.34779 * 120.62889 * 126.36160 * 16 15 14 18 18 O 1.21284 * 119.99500 * 174.89057 * 17 16 15 19 19 C 1.50695 * 120.00122 * 354.89957 * 17 16 15 20 20 H 1.08997 * 109.33995 * 28.09028 * 19 17 16 21 21 O 1.42728 * 109.33753 * 147.60836 * 19 17 16 22 22 C 1.43219 * 113.13606 * 171.94228 * 21 19 17 23 23 C 1.52967 * 108.46556 * 289.29377 * 22 21 19 24 24 C 1.50745 * 109.75536 * 49.23535 * 23 22 21 25 25 C 1.38602 * 118.76082 * 163.12788 * 24 23 22 26 26 C 1.38067 * 120.27316 * 179.75883 * 25 24 23 27 27 C 1.38255 * 119.86264 * 359.97438 * 26 25 24 28 28 C 1.38053 * 119.89960 * 0.09152 * 27 26 25 29 29 C 1.37906 * 121.35146 * 343.04251 * 24 23 22 30 30 C 1.46926 * 118.73709 * 306.38813 * 16 15 14 31 31 H 0.97001 * 120.00221 * 0.02562 * 1 2 3 32 32 H 0.97006 * 119.99448 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.47142 * 300.28244 * 10 9 7 34 34 H 1.09007 * 109.46906 * 60.27872 * 10 9 7 35 35 H 1.09002 * 109.45857 * 301.32968 * 13 11 10 36 36 H 1.08999 * 109.46138 * 61.29416 * 13 11 10 37 37 H 1.09004 * 109.49327 * 178.68177 * 14 13 11 38 38 H 1.08997 * 109.52653 * 58.60446 * 14 13 11 39 39 H 1.09002 * 109.59165 * 294.84999 * 15 14 13 40 40 H 1.09003 * 109.58556 * 174.42685 * 15 14 13 41 41 H 1.08997 * 109.63568 * 169.60179 * 22 21 19 42 42 H 1.08998 * 109.80661 * 49.08938 * 22 21 19 43 43 H 1.09008 * 109.42704 * 289.15026 * 23 22 21 44 44 H 1.09003 * 109.37809 * 169.29653 * 23 22 21 45 45 H 1.07991 * 119.86126 * 359.73129 * 25 24 23 46 46 H 1.08001 * 120.07124 * 179.97438 * 26 25 24 47 47 H 1.07997 * 120.05357 * 180.09436 * 27 26 25 48 48 H 1.08001 * 119.85115 * 179.97438 * 28 27 26 49 49 H 1.08996 * 109.58395 * 293.81913 * 30 16 15 50 50 H 1.08999 * 109.58346 * 173.39355 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0078 11 6 5.6164 -2.1911 0.0139 12 1 5.8701 -1.5465 -0.8277 13 6 6.0019 -1.4986 1.3231 14 6 7.5006 -1.1889 1.3162 15 6 8.2881 -2.4987 1.2121 16 7 7.8197 -3.2397 0.0330 17 6 8.6917 -3.6608 -0.9044 18 8 8.3064 -4.3505 -1.8248 19 6 10.1453 -3.2750 -0.8090 20 1 10.4094 -3.1191 0.2370 21 8 10.9493 -4.3254 -1.3449 22 6 12.3318 -3.9711 -1.4639 23 6 12.4742 -2.9468 -2.5910 24 6 11.4641 -1.8430 -2.4070 25 6 11.6448 -0.6524 -3.0933 26 6 10.7362 0.3774 -2.9516 27 6 9.6412 0.2202 -2.1223 28 6 9.4612 -0.9649 -1.4374 29 6 10.3741 -1.9990 -1.5767 30 6 6.3825 -3.5124 -0.1050 31 1 -0.4850 0.8400 -0.0004 32 1 3.8646 -0.3620 0.0014 33 1 3.8448 -3.0400 0.8980 34 1 3.8530 -3.0447 -0.8819 35 1 5.4396 -0.5700 1.4219 36 1 5.7703 -2.1541 2.1626 37 1 7.7701 -0.6747 2.2388 38 1 7.7374 -0.5532 0.4630 39 1 8.1233 -3.0965 2.1086 40 1 9.3506 -2.2790 1.1072 41 1 12.9185 -4.8590 -1.6995 42 1 12.6838 -3.5372 -0.5280 43 1 12.3048 -3.4369 -3.5499 44 1 13.4792 -2.5253 -2.5719 45 1 12.5001 -0.5297 -3.7410 46 1 10.8804 1.3039 -3.4876 47 1 8.9277 1.0231 -2.0104 48 1 8.6058 -1.0867 -0.7894 49 1 6.0623 -4.1927 0.6840 50 1 6.1877 -3.9613 -1.0789 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317151652.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:56 Heat of formation + Delta-G solvation = -53.835485 kcal Electronic energy + Delta-G solvation = -31244.956957 eV Core-core repulsion = 27236.513085 eV Total energy + Delta-G solvation = -4008.443872 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.19473 -40.58384 -39.10261 -38.37521 -36.82471 -34.71205 -34.00943 -33.19476 -32.93597 -31.97363 -30.55397 -28.15192 -27.18119 -26.08566 -24.89743 -24.27433 -23.65906 -23.02383 -21.47350 -21.22044 -20.20458 -19.70863 -18.75683 -18.19794 -17.68417 -16.89342 -16.70928 -16.53499 -16.20748 -16.05334 -15.95240 -15.60024 -15.45085 -15.15230 -15.04296 -14.83587 -14.65758 -14.41228 -14.11294 -13.95855 -13.77798 -13.60014 -13.57759 -13.53200 -13.00179 -12.86372 -12.77915 -12.71940 -12.29057 -12.20035 -12.00892 -11.96390 -11.78138 -11.65490 -11.57750 -11.41235 -10.98300 -10.97382 -10.74465 -9.80420 -9.76785 -9.62697 -9.31353 -8.04023 -5.37997 0.20203 0.34187 1.32539 1.34781 1.40153 1.47217 1.63402 2.47091 2.67496 2.85526 3.27004 3.31371 3.40669 3.53330 3.64741 3.72085 3.77613 3.81287 3.92883 3.98887 4.06899 4.17209 4.19442 4.24693 4.27604 4.35287 4.47999 4.49753 4.54578 4.61763 4.65035 4.74043 4.77804 4.79004 4.84709 4.90363 4.93794 4.96928 5.08238 5.15046 5.18811 5.30135 5.37444 5.39324 5.45084 5.50281 5.54050 5.73920 5.91703 5.97770 6.19659 6.24040 6.96913 7.06112 7.81262 8.01793 9.17669 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015459 B = 0.002990 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.815044 B = 9360.854614 C =10348.661574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.065 4.065 3 Si 0.956 3.044 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.245 1.245 7 C -0.236 4.236 8 H 0.054 0.946 9 N -0.753 5.753 10 C 0.161 3.839 11 C -0.097 4.097 12 H 0.061 0.939 13 C -0.112 4.112 14 C -0.134 4.134 15 C 0.095 3.905 16 N -0.601 5.601 17 C 0.522 3.478 18 O -0.569 6.569 19 C 0.122 3.878 20 H 0.121 0.879 21 O -0.381 6.381 22 C 0.051 3.949 23 C -0.116 4.116 24 C -0.078 4.078 25 C -0.122 4.122 26 C -0.114 4.114 27 C -0.133 4.133 28 C -0.133 4.133 29 C -0.132 4.132 30 C 0.126 3.874 31 H 0.258 0.742 32 H 0.367 0.633 33 H 0.034 0.966 34 H 0.016 0.984 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.125 0.875 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.118 0.882 45 H 0.151 0.849 46 H 0.147 0.853 47 H 0.134 0.866 48 H 0.133 0.867 49 H 0.089 0.911 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.058 -1.473 1.756 35.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.783 3.217 4 H -0.208 1.208 5 H -0.220 1.220 6 H -0.169 1.169 7 C -0.367 4.367 8 H 0.072 0.928 9 N -0.400 5.400 10 C 0.035 3.965 11 C -0.117 4.117 12 H 0.079 0.921 13 C -0.149 4.149 14 C -0.172 4.172 15 C -0.026 4.026 16 N -0.334 5.334 17 C 0.310 3.690 18 O -0.447 6.447 19 C 0.061 3.939 20 H 0.138 0.862 21 O -0.300 6.300 22 C -0.025 4.025 23 C -0.152 4.152 24 C -0.078 4.078 25 C -0.140 4.140 26 C -0.131 4.131 27 C -0.151 4.151 28 C -0.150 4.150 29 C -0.133 4.133 30 C 0.003 3.997 31 H 0.067 0.933 32 H 0.201 0.799 33 H 0.052 0.948 34 H 0.034 0.966 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.143 0.857 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.136 0.864 45 H 0.168 0.832 46 H 0.165 0.835 47 H 0.152 0.848 48 H 0.151 0.849 49 H 0.107 0.893 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 34.602 -2.154 1.228 34.690 hybrid contribution -0.734 1.173 -0.321 1.421 sum 33.867 -0.981 0.907 33.894 Atomic orbital electron populations 1.69893 1.07229 1.26765 1.59648 1.25546 0.96159 1.01412 1.02537 0.85396 0.78923 0.79374 0.78036 1.20791 1.22011 1.16931 1.19034 0.82743 0.93487 1.41435 0.92782 1.42636 1.02369 1.04006 1.90951 1.20689 0.89956 0.87582 0.98306 1.21546 0.93640 0.97005 0.99472 0.92059 1.21543 0.96358 1.00746 0.96289 1.22084 0.94056 0.96934 1.04125 1.22256 0.99795 0.93016 0.87543 1.48134 1.06812 1.55795 1.22657 1.20501 0.88071 0.79084 0.81379 1.90688 1.79877 1.38969 1.35185 1.20790 0.88338 0.85894 0.98866 0.86235 1.88138 1.20589 1.36037 1.85209 1.23034 0.80529 1.00288 0.98613 1.21235 0.98995 0.94396 1.00606 1.19822 0.95631 0.96465 0.95856 1.21399 1.00640 0.92340 0.99616 1.21517 0.93917 0.99964 0.97745 1.21367 0.98755 0.97636 0.97346 1.21603 0.99047 0.93718 1.00659 1.19826 0.97303 0.94975 1.01164 1.21464 0.78672 0.96365 1.03170 0.93288 0.79945 0.94791 0.96580 0.92595 0.90471 0.87460 0.91555 0.88227 0.87717 0.85749 0.90304 0.90031 0.86351 0.83161 0.83525 0.84810 0.84933 0.89290 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.93 13.97 21.65 0.30 -63.63 16 2 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 3 Si 0.96 45.31 27.74 68.60 1.90 47.22 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.25 -10.18 6.52 99.48 0.65 -9.53 16 7 C -0.24 -13.71 10.47 84.03 0.88 -12.83 16 8 H 0.05 3.46 8.06 -2.91 -0.02 3.43 16 9 N -0.75 -35.39 5.12 -343.45 -1.76 -37.15 16 10 C 0.16 6.18 5.65 86.38 0.49 6.66 16 11 C -0.10 -2.82 2.37 -10.71 -0.03 -2.84 16 12 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 13 C -0.11 -2.65 5.06 30.62 0.15 -2.49 16 14 C -0.13 -2.16 5.84 30.67 0.18 -1.98 16 15 C 0.09 1.38 5.38 86.36 0.46 1.85 16 16 N -0.60 -13.83 2.45 -818.91 -2.00 -15.84 16 17 C 0.52 14.70 5.99 87.66 0.53 15.23 16 18 O -0.57 -21.82 16.20 13.75 0.22 -21.60 16 19 C 0.12 2.62 2.49 29.09 0.07 2.69 16 20 H 0.12 1.74 5.85 -2.39 -0.01 1.72 16 21 O -0.38 -8.82 10.16 -132.19 -1.34 -10.16 16 22 C 0.05 0.65 6.84 71.97 0.49 1.14 16 23 C -0.12 -1.44 6.00 29.85 0.18 -1.26 16 24 C -0.08 -1.39 5.78 -19.84 -0.11 -1.51 16 25 C -0.12 -1.86 9.67 22.32 0.22 -1.65 16 26 C -0.11 -1.82 10.05 22.23 0.22 -1.60 16 27 C -0.13 -2.55 10.05 22.23 0.22 -2.33 16 28 C -0.13 -2.83 8.89 22.32 0.20 -2.63 16 29 C -0.13 -2.80 5.46 -19.86 -0.11 -2.91 16 30 C 0.13 3.38 5.70 86.36 0.49 3.87 16 31 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 32 H 0.37 16.22 4.72 -92.70 -0.44 15.78 16 33 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.06 1.56 7.16 -2.39 -0.02 1.55 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.07 1.16 5.73 -2.39 -0.01 1.15 16 39 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.10 1.10 5.20 -2.39 -0.01 1.08 16 41 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 43 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 44 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.15 1.41 8.06 -2.92 -0.02 1.39 16 46 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 47 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 48 H 0.13 2.80 2.92 -2.91 -0.01 2.80 16 49 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 50 H 0.07 2.25 7.04 -2.39 -0.02 2.23 16 Total: -1.00 -81.81 382.23 2.79 -79.02 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.46 Total: 28.16 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 5.01 Total: -6.02 kcal Atomic # 7 Polarization: -113.16 SS G_CDS: -3.46 Total: -116.62 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -1.12 Total: -31.76 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.22 kcal Total: -81.81 2.79 -79.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317151652.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.180 kcal (2) G-P(sol) polarization free energy of solvation -81.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds