Wall clock time and date at job start Wed Apr 1 2020 02:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00100 * 2 1 4 4 H 1.48502 * 109.47136 * 269.99872 * 3 2 1 5 5 H 1.48499 * 109.47216 * 29.99895 * 3 2 1 6 6 H 1.48505 * 109.47106 * 149.99614 * 3 2 1 7 7 C 1.38812 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99775 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00419 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00476 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47558 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47441 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.52548 * 54.91934 * 12 11 10 14 14 C 1.53041 * 109.49867 * 294.83749 * 12 11 10 15 15 C 1.53043 * 109.53669 * 178.68309 * 14 12 11 16 16 C 1.52760 * 109.38541 * 61.24103 * 15 14 12 17 17 N 1.46933 * 109.00467 * 305.58516 * 16 15 14 18 18 C 1.34775 * 120.62877 * 233.57942 * 17 16 15 19 19 O 1.21282 * 119.99634 * 179.71946 * 18 17 16 20 20 C 1.50700 * 120.00184 * 359.72926 * 18 17 16 21 21 H 1.09004 * 110.82667 * 303.70359 * 20 18 17 22 22 C 1.54710 * 110.97098 * 67.42635 * 20 18 17 23 23 O 1.43776 * 102.78187 * 92.92307 * 22 20 18 24 24 C 1.36134 * 109.30052 * 27.57231 * 23 22 20 25 25 C 1.39277 * 129.89278 * 160.94819 * 24 23 22 26 26 C 1.37935 * 120.23725 * 179.36119 * 25 24 23 27 27 C 1.38285 * 120.35107 * 0.31980 * 26 25 24 28 28 C 1.38349 * 119.76602 * 0.19509 * 27 26 25 29 29 C 1.37741 * 119.98087 * 359.93929 * 28 27 26 30 30 C 1.46921 * 118.73645 * 53.31354 * 17 16 15 31 31 H 0.96998 * 119.99811 * 0.02562 * 1 2 3 32 32 H 0.97002 * 119.99643 * 359.97438 * 9 7 2 33 33 H 1.08995 * 109.47530 * 59.99983 * 10 9 7 34 34 H 1.09003 * 109.46980 * 299.99701 * 10 9 7 35 35 H 1.09004 * 109.47038 * 59.99247 * 11 10 9 36 36 H 1.09003 * 109.46848 * 300.00184 * 11 10 9 37 37 H 1.09000 * 109.45662 * 298.70105 * 14 12 11 38 38 H 1.08998 * 109.45745 * 58.66151 * 14 12 11 39 39 H 1.08998 * 109.49516 * 181.31651 * 15 14 12 40 40 H 1.08997 * 109.49487 * 301.41378 * 15 14 12 41 41 H 1.09000 * 109.50850 * 185.70840 * 16 15 14 42 42 H 1.09001 * 109.43106 * 65.42185 * 16 15 14 43 43 H 1.09001 * 110.74849 * 211.25518 * 22 20 18 44 44 H 1.09007 * 110.74501 * 334.60401 * 22 20 18 45 45 H 1.08002 * 119.88406 * 359.64610 * 25 24 23 46 46 H 1.08005 * 119.82267 * 180.29535 * 26 25 24 47 47 H 1.08001 * 120.11890 * 180.18431 * 27 26 25 48 48 H 1.08007 * 120.01167 * 179.97438 * 28 27 26 49 49 H 1.08997 * 109.59463 * 66.42686 * 30 17 16 50 50 H 1.09000 * 109.58879 * 186.85234 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 -0.0001 12 6 1.8288 -6.1447 -0.0008 13 1 2.5223 -6.1654 0.8400 14 6 2.6091 -6.2835 -1.3100 15 6 3.4006 -7.5933 -1.2977 16 6 2.4326 -8.7696 -1.1844 17 7 1.5746 -8.5716 -0.0082 18 6 1.4689 -9.5297 0.9338 19 8 0.7613 -9.3521 1.9026 20 6 2.2302 -10.8216 0.7833 21 1 1.9862 -11.3074 -0.1615 22 6 3.7540 -10.5837 0.9051 23 8 4.0008 -10.8118 2.3031 24 6 3.0709 -11.6795 2.7884 25 6 3.0942 -12.4613 3.9408 26 6 2.0225 -13.2721 4.2519 27 6 0.9190 -13.3214 3.4201 28 6 0.8926 -12.5560 2.2679 29 6 1.9628 -11.7477 1.9539 30 6 0.8387 -7.3069 0.1245 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6847 -3.7146 0.8905 34 1 2.6847 -3.7145 -0.8895 35 1 0.4375 -4.7617 -0.8903 36 1 0.4369 -4.7622 0.8897 37 1 1.9130 -6.2876 -2.1488 38 1 3.2971 -5.4444 -1.4133 39 1 3.9743 -7.6803 -2.2204 40 1 4.0792 -7.6003 -0.4448 41 1 2.9966 -9.6957 -1.0735 42 1 1.8163 -8.8198 -2.0821 43 1 4.3064 -11.2974 0.2938 44 1 4.0082 -9.5600 0.6301 45 1 3.9524 -12.4291 4.5957 46 1 2.0457 -13.8719 5.1498 47 1 0.0807 -13.9553 3.6688 48 1 0.0328 -12.5917 1.6152 49 1 0.0897 -7.2354 -0.6641 50 1 0.3512 -7.2682 1.0987 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318858329.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:29 Heat of formation + Delta-G solvation = -30.526200 kcal Electronic energy + Delta-G solvation = -30005.575370 eV Core-core repulsion = 25998.142264 eV Total energy + Delta-G solvation = -4007.433106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.92473 -40.02345 -37.86071 -37.70359 -35.43825 -33.78953 -32.97094 -32.10643 -30.88025 -30.37099 -29.68607 -27.54712 -26.03792 -24.39783 -23.88959 -22.78437 -22.39274 -22.34362 -21.31698 -20.10505 -19.22461 -18.03859 -17.34398 -17.03965 -16.94469 -16.54189 -15.83663 -15.65428 -15.26670 -14.83405 -14.71541 -14.47798 -14.30772 -14.03372 -13.77542 -13.65351 -13.35147 -13.26570 -13.22702 -13.02191 -12.94395 -12.86586 -12.23861 -12.03107 -11.97749 -11.56019 -11.45061 -11.26920 -11.12339 -11.05317 -10.98002 -10.77260 -10.58904 -10.49442 -10.19261 -10.08869 -9.95928 -9.67131 -9.20608 -8.87029 -8.78708 -8.47583 -6.88931 -5.74185 -3.02666 0.94796 1.09915 2.27942 2.67406 2.89467 3.42168 3.44749 3.49609 3.51724 3.78555 4.07800 4.16590 4.41752 4.47551 4.60479 4.66063 4.71634 4.74493 4.75904 4.86112 4.90590 4.93631 5.07005 5.10039 5.13775 5.20440 5.29374 5.36231 5.54511 5.54979 5.59581 5.66620 5.69982 5.73493 5.87899 5.95841 5.99446 6.08191 6.08541 6.17720 6.19107 6.23021 6.26432 6.33650 6.43280 6.47571 6.83794 6.88096 6.92920 7.13399 7.71642 7.91759 8.45052 9.55738 10.14927 10.49243 11.48868 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020560 B = 0.001960 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.573151 B =14279.067955 C =14548.298222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.120 4.120 12 C -0.095 4.095 13 H 0.074 0.926 14 C -0.118 4.118 15 C -0.138 4.138 16 C 0.101 3.899 17 N -0.609 5.609 18 C 0.524 3.476 19 O -0.522 6.522 20 C -0.101 4.101 21 H 0.121 0.879 22 C 0.060 3.940 23 O -0.298 6.298 24 C 0.113 3.887 25 C -0.140 4.140 26 C -0.081 4.081 27 C -0.150 4.150 28 C -0.052 4.052 29 C -0.151 4.151 30 C 0.116 3.884 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.016 0.984 34 H 0.020 0.980 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.113 0.887 45 H 0.129 0.871 46 H 0.131 0.869 47 H 0.128 0.872 48 H 0.123 0.877 49 H 0.070 0.930 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.132 -32.097 -1.045 32.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.027 3.973 11 C -0.158 4.158 12 C -0.115 4.115 13 H 0.092 0.908 14 C -0.155 4.155 15 C -0.176 4.176 16 C -0.022 4.022 17 N -0.343 5.343 18 C 0.310 3.690 19 O -0.397 6.397 20 C -0.122 4.122 21 H 0.139 0.861 22 C -0.015 4.015 23 O -0.212 6.212 24 C 0.068 3.932 25 C -0.159 4.159 26 C -0.099 4.099 27 C -0.168 4.168 28 C -0.070 4.070 29 C -0.152 4.152 30 C -0.005 4.005 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.034 0.966 34 H 0.038 0.962 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.130 0.870 45 H 0.147 0.853 46 H 0.149 0.851 47 H 0.146 0.854 48 H 0.141 0.859 49 H 0.088 0.912 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.065 -31.760 -0.407 32.336 hybrid contribution 0.052 1.081 -0.304 1.124 sum 6.117 -30.678 -0.712 31.290 Atomic orbital electron populations 1.69663 1.05105 1.25609 1.57902 1.24757 0.95555 0.97725 1.03166 0.86179 0.78649 0.83836 0.77479 1.21745 1.21759 1.20776 1.19233 0.91011 0.84236 1.42473 0.91242 1.42382 1.05908 1.00108 1.89463 1.20660 0.93505 0.85475 0.97642 1.21697 0.98785 0.92982 1.02328 1.21456 0.97376 0.94257 0.98431 0.90799 1.21651 0.99360 0.96972 0.97531 1.21904 0.97914 0.95075 1.02686 1.21804 0.93028 0.98999 0.88345 1.48113 1.46887 1.16983 1.22295 1.20100 0.82067 0.84407 0.82415 1.90738 1.39562 1.79481 1.29897 1.21560 0.96405 0.94129 1.00138 0.86088 1.23981 0.92297 1.03935 0.81327 1.86870 1.50917 1.59287 1.24136 1.19559 0.88190 0.90302 0.95163 1.20255 1.00884 0.97929 0.96827 1.20896 0.92547 0.97411 0.99064 1.21024 0.99085 1.01617 0.95069 1.20275 0.96114 0.93958 0.96687 1.20142 0.96387 1.00804 0.97879 1.21765 0.93931 0.81199 1.03628 0.93536 0.78328 0.96637 0.96224 0.91738 0.91697 0.91582 0.90440 0.90358 0.91460 0.90242 0.90768 0.89087 0.86953 0.85341 0.85064 0.85358 0.85877 0.91189 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.80 13.06 55.49 0.72 -28.07 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -19.13 5.60 -59.91 -0.34 -19.46 16 10 C 0.15 3.13 6.02 -4.04 -0.02 3.11 16 11 C -0.12 -1.91 4.80 -26.73 -0.13 -2.04 16 12 C -0.10 -1.21 2.34 -90.50 -0.21 -1.42 16 13 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.12 -1.25 4.96 -26.69 -0.13 -1.38 16 15 C -0.14 -1.05 6.00 -26.83 -0.16 -1.21 16 16 C 0.10 0.70 5.46 -3.93 -0.02 0.67 16 17 N -0.61 -6.35 2.97 -173.03 -0.51 -6.86 16 18 C 0.52 6.38 7.02 -10.99 -0.08 6.30 16 19 O -0.52 -8.69 15.55 5.56 0.09 -8.60 16 20 C -0.10 -0.90 2.50 -91.56 -0.23 -1.13 16 21 H 0.12 0.71 7.81 -51.93 -0.41 0.30 16 22 C 0.06 0.47 6.27 38.06 0.24 0.71 16 23 O -0.30 -3.43 11.10 -20.17 -0.22 -3.66 16 24 C 0.11 1.29 7.04 -38.95 -0.27 1.01 16 25 C -0.14 -1.36 10.06 -39.31 -0.40 -1.76 16 26 C -0.08 -0.66 10.02 -39.68 -0.40 -1.06 16 27 C -0.15 -1.25 10.07 -39.52 -0.40 -1.65 16 28 C -0.05 -0.50 10.03 -39.72 -0.40 -0.90 16 29 C -0.15 -1.62 4.93 -104.10 -0.51 -2.13 16 30 C 0.12 1.41 5.72 -3.71 -0.02 1.39 16 31 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.38 10.46 7.67 -40.82 -0.31 10.15 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.02 0.39 6.54 -51.93 -0.34 0.05 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.92 6.51 -51.93 -0.34 0.58 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.54 7.58 -51.93 -0.39 0.15 16 41 H 0.08 0.36 4.79 -51.93 -0.25 0.11 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.11 0.81 6.02 -51.93 -0.31 0.50 16 45 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 46 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 47 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 48 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 49 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.09 1.33 7.01 -51.93 -0.36 0.96 16 LS Contribution 393.45 15.07 5.93 5.93 Total: -1.00 -35.92 393.45 -10.51 -46.42 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -7.76 Total: 5.62 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -3.39 Total: -9.06 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.13 Total: -54.40 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.14 Total: -12.26 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.92 -10.51 -46.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318858329.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.897 kcal (2) G-P(sol) polarization free energy of solvation -35.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds