Wall clock time and date at job start Wed Apr 1 2020 02:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00100 * 2 1 4 4 H 1.48502 * 109.47136 * 269.99872 * 3 2 1 5 5 H 1.48499 * 109.47216 * 29.99895 * 3 2 1 6 6 H 1.48505 * 109.47106 * 149.99614 * 3 2 1 7 7 C 1.38812 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99775 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00419 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00476 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47558 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47441 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.52548 * 54.91934 * 12 11 10 14 14 C 1.53041 * 109.49867 * 294.83749 * 12 11 10 15 15 C 1.53043 * 109.53669 * 178.68309 * 14 12 11 16 16 C 1.52760 * 109.38541 * 61.24103 * 15 14 12 17 17 N 1.46933 * 109.00467 * 305.58516 * 16 15 14 18 18 C 1.34775 * 120.62877 * 233.57942 * 17 16 15 19 19 O 1.21282 * 119.99634 * 179.71946 * 18 17 16 20 20 C 1.50700 * 120.00184 * 359.72926 * 18 17 16 21 21 H 1.09004 * 110.82667 * 303.70359 * 20 18 17 22 22 C 1.54710 * 110.97098 * 67.42635 * 20 18 17 23 23 O 1.43776 * 102.78187 * 92.92307 * 22 20 18 24 24 C 1.36134 * 109.30052 * 27.57231 * 23 22 20 25 25 C 1.39277 * 129.89278 * 160.94819 * 24 23 22 26 26 C 1.37935 * 120.23725 * 179.36119 * 25 24 23 27 27 C 1.38285 * 120.35107 * 0.31980 * 26 25 24 28 28 C 1.38349 * 119.76602 * 0.19509 * 27 26 25 29 29 C 1.37741 * 119.98087 * 359.93929 * 28 27 26 30 30 C 1.46921 * 118.73645 * 53.31354 * 17 16 15 31 31 H 0.96998 * 119.99811 * 0.02562 * 1 2 3 32 32 H 0.97002 * 119.99643 * 359.97438 * 9 7 2 33 33 H 1.08995 * 109.47530 * 59.99983 * 10 9 7 34 34 H 1.09003 * 109.46980 * 299.99701 * 10 9 7 35 35 H 1.09004 * 109.47038 * 59.99247 * 11 10 9 36 36 H 1.09003 * 109.46848 * 300.00184 * 11 10 9 37 37 H 1.09000 * 109.45662 * 298.70105 * 14 12 11 38 38 H 1.08998 * 109.45745 * 58.66151 * 14 12 11 39 39 H 1.08998 * 109.49516 * 181.31651 * 15 14 12 40 40 H 1.08997 * 109.49487 * 301.41378 * 15 14 12 41 41 H 1.09000 * 109.50850 * 185.70840 * 16 15 14 42 42 H 1.09001 * 109.43106 * 65.42185 * 16 15 14 43 43 H 1.09001 * 110.74849 * 211.25518 * 22 20 18 44 44 H 1.09007 * 110.74501 * 334.60401 * 22 20 18 45 45 H 1.08002 * 119.88406 * 359.64610 * 25 24 23 46 46 H 1.08005 * 119.82267 * 180.29535 * 26 25 24 47 47 H 1.08001 * 120.11890 * 180.18431 * 27 26 25 48 48 H 1.08007 * 120.01167 * 179.97438 * 28 27 26 49 49 H 1.08997 * 109.59463 * 66.42686 * 30 17 16 50 50 H 1.09000 * 109.58879 * 186.85234 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 -0.0001 12 6 1.8288 -6.1447 -0.0008 13 1 2.5223 -6.1654 0.8400 14 6 2.6091 -6.2835 -1.3100 15 6 3.4006 -7.5933 -1.2977 16 6 2.4326 -8.7696 -1.1844 17 7 1.5746 -8.5716 -0.0082 18 6 1.4689 -9.5297 0.9338 19 8 0.7613 -9.3521 1.9026 20 6 2.2302 -10.8216 0.7833 21 1 1.9862 -11.3074 -0.1615 22 6 3.7540 -10.5837 0.9051 23 8 4.0008 -10.8118 2.3031 24 6 3.0709 -11.6795 2.7884 25 6 3.0942 -12.4613 3.9408 26 6 2.0225 -13.2721 4.2519 27 6 0.9190 -13.3214 3.4201 28 6 0.8926 -12.5560 2.2679 29 6 1.9628 -11.7477 1.9539 30 6 0.8387 -7.3069 0.1245 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6847 -3.7146 0.8905 34 1 2.6847 -3.7145 -0.8895 35 1 0.4375 -4.7617 -0.8903 36 1 0.4369 -4.7622 0.8897 37 1 1.9130 -6.2876 -2.1488 38 1 3.2971 -5.4444 -1.4133 39 1 3.9743 -7.6803 -2.2204 40 1 4.0792 -7.6003 -0.4448 41 1 2.9966 -9.6957 -1.0735 42 1 1.8163 -8.8198 -2.0821 43 1 4.3064 -11.2974 0.2938 44 1 4.0082 -9.5600 0.6301 45 1 3.9524 -12.4291 4.5957 46 1 2.0457 -13.8719 5.1498 47 1 0.0807 -13.9553 3.6688 48 1 0.0328 -12.5917 1.6152 49 1 0.0897 -7.2354 -0.6641 50 1 0.3512 -7.2682 1.0987 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318858329.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:27 Heat of formation + Delta-G solvation = -53.308208 kcal Electronic energy + Delta-G solvation = -30006.563272 eV Core-core repulsion = 25998.142264 eV Total energy + Delta-G solvation = -4008.421008 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.64523 -40.87494 -38.89427 -38.36761 -36.98306 -35.18942 -33.89716 -33.17203 -32.43764 -31.06623 -30.47479 -29.00323 -26.85099 -25.92277 -24.82267 -23.76314 -23.39902 -23.08647 -22.56386 -21.22792 -20.03258 -19.17558 -18.72454 -18.05270 -17.69001 -17.34457 -16.79866 -16.47957 -16.44332 -16.10466 -15.94223 -15.54012 -15.33674 -15.15460 -14.94641 -14.77337 -14.46165 -14.28275 -14.21144 -14.03084 -13.89779 -13.54480 -13.33188 -12.99844 -12.89091 -12.75934 -12.65466 -12.46369 -12.43488 -12.20276 -12.12820 -11.96120 -11.86746 -11.75627 -11.70127 -11.55572 -11.28961 -10.94683 -10.90673 -9.89009 -9.70855 -9.17052 -9.02657 -7.97748 -5.27364 0.27025 0.40678 1.41292 1.45220 1.47753 1.56266 1.86406 2.25113 2.54097 2.74240 3.10668 3.35491 3.44225 3.49469 3.67469 3.76820 3.83329 3.86697 4.03420 4.10415 4.14238 4.20065 4.30621 4.32185 4.34985 4.40685 4.48176 4.51023 4.54596 4.58245 4.63291 4.66276 4.74633 4.81684 4.83896 4.86682 4.99473 5.04409 5.13658 5.22507 5.31231 5.33552 5.41890 5.42796 5.44613 5.47683 5.51430 5.53475 5.64066 6.16284 6.24754 6.32219 7.03819 7.30204 8.06545 8.29641 9.25997 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020560 B = 0.001960 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.573151 B =14279.067955 C =14548.298222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.977 3.023 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.248 4.248 8 H 0.076 0.924 9 N -0.750 5.750 10 C 0.155 3.845 11 C -0.108 4.108 12 C -0.084 4.084 13 H 0.058 0.942 14 C -0.117 4.117 15 C -0.132 4.132 16 C 0.096 3.904 17 N -0.605 5.605 18 C 0.517 3.483 19 O -0.579 6.579 20 C -0.094 4.094 21 H 0.158 0.842 22 C 0.057 3.943 23 O -0.325 6.325 24 C 0.086 3.914 25 C -0.157 4.157 26 C -0.082 4.082 27 C -0.153 4.153 28 C -0.068 4.068 29 C -0.170 4.170 30 C 0.121 3.879 31 H 0.252 0.748 32 H 0.373 0.627 33 H 0.008 0.992 34 H 0.032 0.968 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.107 0.893 40 H 0.062 0.938 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.129 0.871 44 H 0.117 0.883 45 H 0.137 0.863 46 H 0.160 0.840 47 H 0.153 0.847 48 H 0.133 0.867 49 H 0.082 0.918 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.675 -34.034 -2.651 34.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.806 3.194 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.380 4.380 8 H 0.093 0.907 9 N -0.392 5.392 10 C 0.029 3.971 11 C -0.146 4.146 12 C -0.103 4.103 13 H 0.077 0.923 14 C -0.154 4.154 15 C -0.170 4.170 16 C -0.025 4.025 17 N -0.337 5.337 18 C 0.306 3.694 19 O -0.458 6.458 20 C -0.115 4.115 21 H 0.175 0.825 22 C -0.017 4.017 23 O -0.239 6.239 24 C 0.041 3.959 25 C -0.175 4.175 26 C -0.100 4.100 27 C -0.171 4.171 28 C -0.086 4.086 29 C -0.171 4.171 30 C -0.002 4.002 31 H 0.061 0.939 32 H 0.204 0.796 33 H 0.026 0.974 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.126 0.874 40 H 0.081 0.919 41 H 0.129 0.871 42 H 0.112 0.888 43 H 0.146 0.854 44 H 0.134 0.866 45 H 0.155 0.845 46 H 0.177 0.823 47 H 0.170 0.830 48 H 0.151 0.849 49 H 0.100 0.900 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.666 -33.731 -2.054 34.652 hybrid contribution -0.429 1.639 0.228 1.710 sum 7.237 -32.092 -1.826 32.948 Atomic orbital electron populations 1.69826 1.06684 1.26175 1.59430 1.25649 0.96507 1.01350 1.03618 0.85085 0.77609 0.79123 0.77614 1.20990 1.22122 1.19469 1.19652 0.91521 0.85418 1.41380 0.90656 1.42639 1.05686 1.01459 1.89453 1.20813 0.94111 0.84710 0.97501 1.21555 0.97957 0.93341 1.01743 1.21297 0.96999 0.92548 0.99499 0.92331 1.21635 0.99260 0.98509 0.96023 1.21890 0.97704 0.93324 1.04046 1.22140 0.92926 1.00058 0.87383 1.48198 1.46692 1.15729 1.23038 1.20774 0.81477 0.85545 0.81621 1.90708 1.42157 1.80730 1.32208 1.21630 0.96586 0.91985 1.01284 0.82455 1.24282 0.91751 1.05346 0.80339 1.86812 1.51363 1.59659 1.26112 1.19896 0.88793 0.91098 0.96119 1.20596 1.01890 0.98251 0.96785 1.21273 0.91850 0.96996 0.99848 1.21405 0.99832 1.01360 0.94509 1.20584 0.96283 0.94234 0.97534 1.20432 0.96562 1.01394 0.98688 1.21537 0.94057 0.82080 1.02492 0.93931 0.79560 0.97389 0.95026 0.91338 0.93281 0.90769 0.91814 0.87422 0.91911 0.87124 0.88799 0.85363 0.86553 0.84485 0.82278 0.82952 0.84913 0.89956 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.90 13.06 21.65 0.28 -60.62 16 2 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 3 Si 0.98 47.00 29.55 68.60 2.03 49.03 16 4 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.75 -39.81 5.60 -343.47 -1.92 -41.73 16 10 C 0.15 6.36 6.02 86.38 0.52 6.88 16 11 C -0.11 -3.52 4.80 30.59 0.15 -3.38 16 12 C -0.08 -2.12 2.34 -10.72 -0.03 -2.14 16 13 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 14 C -0.12 -2.27 4.96 30.62 0.15 -2.12 16 15 C -0.13 -1.58 6.00 30.53 0.18 -1.40 16 16 C 0.10 0.98 5.46 86.22 0.47 1.45 16 17 N -0.60 -11.77 2.97 -819.74 -2.44 -14.20 16 18 C 0.52 12.32 7.02 87.66 0.62 12.94 16 19 O -0.58 -20.02 15.55 -3.04 -0.05 -20.07 16 20 C -0.09 -1.51 2.50 -11.40 -0.03 -1.53 16 21 H 0.16 1.26 7.81 -2.39 -0.02 1.24 16 22 C 0.06 0.77 6.27 72.57 0.45 1.22 16 23 O -0.32 -7.33 11.10 -95.07 -1.06 -8.39 16 24 C 0.09 1.94 7.04 22.68 0.16 2.10 16 25 C -0.16 -3.00 10.06 22.45 0.23 -2.78 16 26 C -0.08 -1.24 10.02 22.21 0.22 -1.02 16 27 C -0.15 -2.36 10.07 22.31 0.22 -2.14 16 28 C -0.07 -1.27 10.03 22.18 0.22 -1.04 16 29 C -0.17 -3.52 4.93 -19.53 -0.10 -3.61 16 30 C 0.12 2.93 5.72 86.36 0.49 3.42 16 31 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 32 H 0.37 20.99 7.67 -92.71 -0.71 20.28 16 33 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.03 1.25 6.54 -2.39 -0.02 1.23 16 35 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.06 1.43 6.51 -2.39 -0.02 1.41 16 39 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 0.85 7.58 -2.39 -0.02 0.83 16 41 H 0.11 0.48 4.79 -2.39 -0.01 0.47 16 42 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.12 1.39 6.02 -2.38 -0.01 1.38 16 45 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 46 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 47 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 48 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 49 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.06 1.92 7.01 -2.39 -0.02 1.91 16 Total: -1.00 -81.30 393.45 2.33 -78.97 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.24 Total: 27.86 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 5.25 Total: -10.85 kcal Atomic # 7 Polarization: -112.48 SS G_CDS: -4.08 Total: -116.56 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -1.10 Total: -28.45 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -81.30 2.33 -78.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318858329.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.658 kcal (2) G-P(sol) polarization free energy of solvation -81.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds