Wall clock time and date at job start Wed Apr 1 2020 03:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00137 * 2 1 4 4 H 1.48504 * 109.47097 * 270.00245 * 3 2 1 5 5 H 1.48494 * 109.47083 * 30.00364 * 3 2 1 6 6 H 1.48494 * 109.46970 * 150.00458 * 3 2 1 7 7 C 1.37881 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00127 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99965 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47094 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47222 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47383 * 180.02562 * 11 10 9 13 13 C 1.34771 * 120.00383 * 180.02562 * 12 11 10 14 14 O 1.21348 * 119.99699 * 359.97438 * 13 12 11 15 15 C 1.49450 * 120.00529 * 180.02562 * 13 12 11 16 16 O 1.21354 * 119.99375 * 359.97438 * 15 13 12 17 17 N 1.34771 * 120.00529 * 180.02562 * 15 13 12 18 18 C 1.46499 * 120.00383 * 179.97438 * 17 15 13 19 19 H 1.09007 * 109.46864 * 34.99596 * 18 17 15 20 20 C 1.52995 * 109.47322 * 154.99498 * 18 17 15 21 21 C 1.50707 * 109.47301 * 294.99997 * 20 18 17 22 22 C 1.38238 * 119.99792 * 90.00016 * 21 20 18 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97953 * 21 20 18 27 27 C 1.52995 * 109.47120 * 274.99724 * 18 17 15 28 28 C 1.52998 * 117.49911 * 128.74490 * 27 18 17 29 29 C 1.52996 * 117.50007 * 60.08499 * 27 18 17 30 30 H 0.97000 * 119.99601 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.47251 * 59.99792 * 9 7 2 32 32 H 1.09002 * 109.47053 * 299.99900 * 9 7 2 33 33 H 1.09007 * 109.47407 * 60.00496 * 10 9 7 34 34 H 1.08993 * 109.47320 * 300.00253 * 10 9 7 35 35 H 1.09002 * 109.46783 * 60.00579 * 11 10 9 36 36 H 1.08993 * 109.47481 * 300.00523 * 11 10 9 37 37 H 0.97007 * 119.99598 * 359.97438 * 12 11 10 38 38 H 0.97002 * 119.99524 * 359.97438 * 17 15 13 39 39 H 1.09005 * 109.47610 * 175.00300 * 20 18 17 40 40 H 1.09000 * 109.47256 * 54.99642 * 20 18 17 41 41 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 42 42 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 45 45 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 46 46 H 1.09000 * 115.55259 * 274.41783 * 27 18 17 47 47 H 1.08997 * 117.50347 * 0.02562 * 28 27 18 48 48 H 1.09004 * 117.49921 * 145.02117 * 28 27 18 49 49 H 1.09006 * 117.50040 * 214.98022 * 29 27 18 50 50 H 1.09003 * 117.50213 * 0.02562 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6366 -0.0022 12 7 6.0399 -4.0178 -0.0027 13 6 7.3649 -4.2642 -0.0033 14 8 8.1534 -3.3418 -0.0039 15 6 7.8631 -5.6732 -0.0044 16 8 7.0744 -6.5955 -0.0043 17 7 9.1881 -5.9195 -0.0044 18 6 9.6764 -7.3007 -0.0049 19 1 9.0038 -7.9237 -0.5946 20 6 11.0789 -7.3456 -0.6146 21 6 11.0087 -6.9471 -2.0663 22 6 11.1461 -5.6194 -2.4260 23 6 11.0822 -5.2540 -3.7577 24 6 10.8814 -6.2162 -4.7296 25 6 10.7386 -7.5431 -4.3695 26 6 10.8072 -7.9092 -3.0382 27 6 9.7279 -7.8240 1.4318 28 6 9.0478 -9.1637 1.7206 29 6 8.4157 -7.8612 2.2176 30 1 -0.4849 0.8401 0.0004 31 1 3.8752 -0.6805 0.8888 32 1 3.8745 -0.6801 -0.8912 33 1 3.6579 -3.1507 -0.8908 34 1 3.6585 -3.1502 0.8892 35 1 5.9155 -2.1226 0.8874 36 1 5.9142 -2.1231 -0.8926 37 1 5.4094 -4.7551 -0.0019 38 1 9.8184 -5.1822 -0.0041 39 1 11.4779 -8.3568 -0.5344 40 1 11.7301 -6.6546 -0.0793 41 1 11.3035 -4.8677 -1.6667 42 1 11.1892 -4.2167 -4.0386 43 1 10.8319 -5.9306 -5.7700 44 1 10.5774 -8.2944 -5.1285 45 1 10.7005 -8.9465 -2.7573 46 1 10.6387 -7.5926 1.9841 47 1 8.5640 -9.6726 0.8869 48 1 9.5109 -9.8136 2.4631 49 1 8.4632 -7.6547 3.2869 50 1 7.5155 -7.5133 1.7108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323070233.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:13 Heat of formation + Delta-G solvation = -37.949915 kcal Electronic energy + Delta-G solvation = -29271.437080 eV Core-core repulsion = 25263.682058 eV Total energy + Delta-G solvation = -4007.755022 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.95183 -39.71627 -38.84337 -37.46824 -35.84474 -35.00371 -33.38667 -32.74435 -31.47986 -31.18878 -29.27363 -27.63979 -25.31455 -24.10537 -22.94520 -22.60936 -22.37925 -21.40129 -20.86852 -20.64537 -20.09246 -18.37453 -17.19800 -17.10257 -16.74271 -16.36937 -15.95990 -15.62402 -15.58118 -15.17628 -15.13400 -14.89249 -14.34304 -14.20025 -13.74541 -13.71533 -13.52625 -13.32451 -13.24888 -12.73178 -12.56605 -12.30762 -12.09310 -11.98394 -11.97385 -11.81345 -11.51762 -11.38797 -11.29251 -11.11326 -10.92413 -10.65358 -10.50296 -10.17022 -9.97809 -9.78644 -9.50646 -9.42868 -9.24366 -9.20526 -9.06402 -9.00152 -8.56592 -6.06976 -4.05910 1.02250 1.10210 1.38327 2.27903 3.17779 3.30097 3.37703 3.39587 3.41271 3.45839 3.78586 4.12526 4.39686 4.43197 4.46175 4.47123 4.63934 4.70715 4.75030 4.78418 4.82750 4.92976 5.08089 5.18823 5.19617 5.26736 5.33205 5.41994 5.43886 5.51145 5.56633 5.67309 5.71748 5.73195 5.84842 5.92913 5.94973 6.11582 6.15898 6.16516 6.23390 6.27735 6.38604 6.54185 6.69366 6.73653 6.89715 7.19707 7.33071 7.35977 7.70594 7.74459 8.00116 8.49504 8.97191 9.54863 11.06263 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012229 B = 0.002176 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.041678 B =12864.036333 C =14291.828631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.115 4.115 11 C 0.112 3.888 12 N -0.691 5.691 13 C 0.501 3.499 14 O -0.527 6.527 15 C 0.512 3.488 16 O -0.518 6.518 17 N -0.692 5.692 18 C 0.181 3.819 19 H 0.095 0.905 20 C -0.085 4.085 21 C -0.086 4.086 22 C -0.112 4.112 23 C -0.116 4.116 24 C -0.123 4.123 25 C -0.119 4.119 26 C -0.116 4.116 27 C -0.176 4.176 28 C -0.168 4.168 29 C -0.181 4.181 30 H 0.263 0.737 31 H 0.019 0.981 32 H 0.015 0.985 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.412 0.588 38 H 0.410 0.590 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.107 0.893 47 H 0.096 0.904 48 H 0.093 0.907 49 H 0.090 0.910 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.714 -18.966 -2.698 33.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.153 4.153 11 C -0.011 4.011 12 N -0.343 5.343 13 C 0.280 3.720 14 O -0.404 6.404 15 C 0.294 3.706 16 O -0.394 6.394 17 N -0.345 5.345 18 C 0.077 3.923 19 H 0.113 0.887 20 C -0.123 4.123 21 C -0.086 4.086 22 C -0.130 4.130 23 C -0.134 4.134 24 C -0.141 4.141 25 C -0.137 4.137 26 C -0.134 4.134 27 C -0.195 4.195 28 C -0.205 4.205 29 C -0.218 4.218 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.033 0.967 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.248 0.752 38 H 0.246 0.754 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.125 0.875 47 H 0.114 0.886 48 H 0.112 0.888 49 H 0.108 0.892 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 27.539 -18.829 -2.705 33.470 hybrid contribution 0.317 0.980 -0.021 1.031 sum 27.856 -17.849 -2.726 33.196 Atomic orbital electron populations 1.69914 1.06316 1.26956 1.50917 1.25033 0.94755 0.99230 0.94478 0.86772 0.80386 0.83544 0.78568 1.20250 1.21365 1.18906 1.21089 0.89250 0.94568 1.51141 0.90939 1.19500 0.97370 0.91259 0.96690 1.21739 0.90141 1.01254 1.02158 1.21837 0.96653 0.80142 1.02419 1.46011 1.06108 1.11048 1.71160 1.20047 0.83942 0.89106 0.78861 1.90747 1.55279 1.45525 1.48881 1.20247 0.83406 0.89776 0.77207 1.90696 1.55275 1.45578 1.47845 1.45797 1.06593 1.09200 1.72880 1.20613 0.95200 0.82458 0.94077 0.88704 1.20886 0.95874 1.03669 0.91836 1.19778 1.00262 0.93650 0.94953 1.21063 1.00129 0.95374 0.96397 1.21191 0.99486 0.99628 0.93068 1.21189 1.00045 0.93275 0.99553 1.21151 1.00007 0.96338 0.96192 1.21036 1.00362 0.99156 0.92819 1.22692 0.97964 1.02244 0.96600 1.22934 1.03712 0.90315 1.03577 1.23299 0.97453 1.01065 0.99987 0.92682 0.96257 0.96692 0.91846 0.91797 0.91139 0.91173 0.75179 0.75359 0.88807 0.90005 0.86145 0.85952 0.86142 0.86104 0.86084 0.87533 0.88601 0.88820 0.89199 0.86469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.24 4.04 -27.89 -0.11 -0.35 16 10 C -0.11 -2.13 5.27 -26.73 -0.14 -2.27 16 11 C 0.11 1.80 5.67 -4.04 -0.02 1.77 16 12 N -0.69 -9.88 5.55 -60.73 -0.34 -10.22 16 13 C 0.50 7.13 7.89 -11.59 -0.09 7.04 16 14 O -0.53 -8.46 16.48 5.50 0.09 -8.37 16 15 C 0.51 6.34 7.22 -11.59 -0.08 6.26 16 16 O -0.52 -7.14 13.50 5.49 0.07 -7.06 16 17 N -0.69 -6.57 4.50 -54.24 -0.24 -6.81 16 18 C 0.18 1.41 2.26 -67.94 -0.15 1.25 16 19 H 0.09 0.90 7.34 -51.92 -0.38 0.52 16 20 C -0.09 -0.49 4.87 -27.88 -0.14 -0.63 16 21 C -0.09 -0.66 4.95 -104.62 -0.52 -1.18 16 22 C -0.11 -0.92 9.10 -39.58 -0.36 -1.28 16 23 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 24 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 25 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 26 C -0.12 -0.89 9.70 -39.58 -0.38 -1.27 16 27 C -0.18 -1.31 5.36 -90.63 -0.49 -1.80 16 28 C -0.17 -1.24 10.18 -26.70 -0.27 -1.52 16 29 C -0.18 -1.69 9.73 -26.70 -0.26 -1.95 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 32 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.41 5.43 7.95 -40.82 -0.32 5.10 16 38 H 0.41 3.57 7.30 -40.82 -0.30 3.27 16 39 H 0.09 0.42 8.09 -51.93 -0.42 0.00 16 40 H 0.08 0.39 8.09 -51.93 -0.42 -0.03 16 41 H 0.12 0.86 7.57 -52.48 -0.40 0.46 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 45 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 46 H 0.11 0.67 8.11 -51.93 -0.42 0.25 16 47 H 0.10 0.73 8.05 -51.93 -0.42 0.31 16 48 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.12 1.38 5.02 -51.93 -0.26 1.12 16 LS Contribution 413.39 15.07 6.23 6.23 Total: -1.00 -32.67 413.39 -10.65 -43.32 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -7.92 Total: 6.16 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -4.64 Total: -13.21 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.19 Total: -43.96 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.16 Total: -15.43 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.67 -10.65 -43.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323070233.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.366 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds