Wall clock time and date at job start Wed Apr 1 2020 03:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00137 * 2 1 4 4 H 1.48504 * 109.47097 * 270.00245 * 3 2 1 5 5 H 1.48494 * 109.47083 * 30.00364 * 3 2 1 6 6 H 1.48494 * 109.46970 * 150.00458 * 3 2 1 7 7 C 1.37881 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00127 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99965 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47094 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47222 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47383 * 180.02562 * 11 10 9 13 13 C 1.34771 * 120.00383 * 180.02562 * 12 11 10 14 14 O 1.21348 * 119.99699 * 359.97438 * 13 12 11 15 15 C 1.49450 * 120.00529 * 180.02562 * 13 12 11 16 16 O 1.21354 * 119.99375 * 359.97438 * 15 13 12 17 17 N 1.34771 * 120.00529 * 180.02562 * 15 13 12 18 18 C 1.46499 * 120.00383 * 179.97438 * 17 15 13 19 19 H 1.09007 * 109.46864 * 34.99596 * 18 17 15 20 20 C 1.52995 * 109.47322 * 154.99498 * 18 17 15 21 21 C 1.50707 * 109.47301 * 294.99997 * 20 18 17 22 22 C 1.38238 * 119.99792 * 90.00016 * 21 20 18 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97953 * 21 20 18 27 27 C 1.52995 * 109.47120 * 274.99724 * 18 17 15 28 28 C 1.52998 * 117.49911 * 128.74490 * 27 18 17 29 29 C 1.52996 * 117.50007 * 60.08499 * 27 18 17 30 30 H 0.97000 * 119.99601 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.47251 * 59.99792 * 9 7 2 32 32 H 1.09002 * 109.47053 * 299.99900 * 9 7 2 33 33 H 1.09007 * 109.47407 * 60.00496 * 10 9 7 34 34 H 1.08993 * 109.47320 * 300.00253 * 10 9 7 35 35 H 1.09002 * 109.46783 * 60.00579 * 11 10 9 36 36 H 1.08993 * 109.47481 * 300.00523 * 11 10 9 37 37 H 0.97007 * 119.99598 * 359.97438 * 12 11 10 38 38 H 0.97002 * 119.99524 * 359.97438 * 17 15 13 39 39 H 1.09005 * 109.47610 * 175.00300 * 20 18 17 40 40 H 1.09000 * 109.47256 * 54.99642 * 20 18 17 41 41 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 42 42 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 45 45 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 46 46 H 1.09000 * 115.55259 * 274.41783 * 27 18 17 47 47 H 1.08997 * 117.50347 * 0.02562 * 28 27 18 48 48 H 1.09004 * 117.49921 * 145.02117 * 28 27 18 49 49 H 1.09006 * 117.50040 * 214.98022 * 29 27 18 50 50 H 1.09003 * 117.50213 * 0.02562 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6366 -0.0022 12 7 6.0399 -4.0178 -0.0027 13 6 7.3649 -4.2642 -0.0033 14 8 8.1534 -3.3418 -0.0039 15 6 7.8631 -5.6732 -0.0044 16 8 7.0744 -6.5955 -0.0043 17 7 9.1881 -5.9195 -0.0044 18 6 9.6764 -7.3007 -0.0049 19 1 9.0038 -7.9237 -0.5946 20 6 11.0789 -7.3456 -0.6146 21 6 11.0087 -6.9471 -2.0663 22 6 11.1461 -5.6194 -2.4260 23 6 11.0822 -5.2540 -3.7577 24 6 10.8814 -6.2162 -4.7296 25 6 10.7386 -7.5431 -4.3695 26 6 10.8072 -7.9092 -3.0382 27 6 9.7279 -7.8240 1.4318 28 6 9.0478 -9.1637 1.7206 29 6 8.4157 -7.8612 2.2176 30 1 -0.4849 0.8401 0.0004 31 1 3.8752 -0.6805 0.8888 32 1 3.8745 -0.6801 -0.8912 33 1 3.6579 -3.1507 -0.8908 34 1 3.6585 -3.1502 0.8892 35 1 5.9155 -2.1226 0.8874 36 1 5.9142 -2.1231 -0.8926 37 1 5.4094 -4.7551 -0.0019 38 1 9.8184 -5.1822 -0.0041 39 1 11.4779 -8.3568 -0.5344 40 1 11.7301 -6.6546 -0.0793 41 1 11.3035 -4.8677 -1.6667 42 1 11.1892 -4.2167 -4.0386 43 1 10.8319 -5.9306 -5.7700 44 1 10.5774 -8.2944 -5.1285 45 1 10.7005 -8.9465 -2.7573 46 1 10.6387 -7.5926 1.9841 47 1 8.5640 -9.6726 0.8869 48 1 9.5109 -9.8136 2.4631 49 1 8.4632 -7.6547 3.2869 50 1 7.5155 -7.5133 1.7108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323070233.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:12 Heat of formation + Delta-G solvation = -57.553940 kcal Electronic energy + Delta-G solvation = -29272.287175 eV Core-core repulsion = 25263.682058 eV Total energy + Delta-G solvation = -4008.605117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.89858 -40.46784 -39.71276 -38.26019 -37.19672 -35.81272 -35.14599 -33.51087 -33.25356 -31.75040 -29.97437 -29.25081 -26.39064 -25.05961 -23.91507 -23.44806 -23.18032 -22.29680 -21.97369 -21.42867 -21.26908 -19.49887 -18.83722 -18.12445 -17.66625 -17.32656 -16.97259 -16.53858 -16.44277 -16.18442 -15.96394 -15.94411 -15.67390 -15.34687 -14.89286 -14.78166 -14.51618 -14.26585 -13.94673 -13.84608 -13.82119 -13.62558 -13.12759 -12.92680 -12.87841 -12.74290 -12.70600 -12.49866 -12.26593 -11.94213 -11.90638 -11.82697 -11.78229 -11.61529 -11.34336 -11.27943 -11.12549 -10.75942 -10.65356 -10.30687 -10.20507 -9.79619 -9.58553 -8.28852 -6.33324 0.32924 0.44479 0.51860 1.29973 1.38051 1.39669 1.51512 2.12497 2.37118 2.53806 2.84894 3.02778 3.06854 3.44543 3.55749 3.84127 3.95684 4.00890 4.05499 4.12336 4.15997 4.17502 4.21538 4.30396 4.37057 4.46669 4.50649 4.63094 4.65928 4.79515 4.81264 4.84344 4.85137 4.98640 5.00742 5.04812 5.16085 5.17333 5.18028 5.22082 5.28209 5.39891 5.45188 5.54348 5.58952 5.64505 5.65404 5.70388 5.92808 6.14240 6.27604 6.34066 6.72145 6.75063 6.93886 7.31382 8.87765 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012229 B = 0.002176 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.041678 B =12864.036333 C =14291.828631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.244 1.244 7 C -0.533 4.533 8 H 0.034 0.966 9 C -0.010 4.010 10 C -0.104 4.104 11 C 0.125 3.875 12 N -0.690 5.690 13 C 0.501 3.499 14 O -0.545 6.545 15 C 0.515 3.485 16 O -0.535 6.535 17 N -0.677 5.677 18 C 0.182 3.818 19 H 0.079 0.921 20 C -0.077 4.077 21 C -0.092 4.092 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.137 4.137 25 C -0.131 4.131 26 C -0.125 4.125 27 C -0.164 4.164 28 C -0.157 4.157 29 C -0.205 4.205 30 H 0.266 0.734 31 H 0.025 0.975 32 H 0.023 0.977 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.417 0.583 38 H 0.416 0.584 39 H 0.115 0.885 40 H 0.098 0.902 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.127 0.873 47 H 0.092 0.908 48 H 0.112 0.888 49 H 0.092 0.908 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.769 -19.320 -2.384 36.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.167 1.167 7 C -0.571 4.571 8 H 0.052 0.948 9 C -0.048 4.048 10 C -0.142 4.142 11 C 0.002 3.998 12 N -0.342 5.342 13 C 0.281 3.719 14 O -0.423 6.423 15 C 0.295 3.705 16 O -0.413 6.413 17 N -0.330 5.330 18 C 0.078 3.922 19 H 0.097 0.903 20 C -0.114 4.114 21 C -0.092 4.092 22 C -0.143 4.143 23 C -0.152 4.152 24 C -0.155 4.155 25 C -0.148 4.148 26 C -0.143 4.143 27 C -0.183 4.183 28 C -0.194 4.194 29 C -0.242 4.242 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.254 0.746 38 H 0.253 0.747 39 H 0.133 0.867 40 H 0.116 0.884 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.156 0.844 46 H 0.145 0.855 47 H 0.110 0.890 48 H 0.130 0.870 49 H 0.111 0.889 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 30.633 -19.214 -2.393 36.240 hybrid contribution -0.682 0.986 -0.142 1.207 sum 29.951 -18.228 -2.535 35.154 Atomic orbital electron populations 1.70071 1.08348 1.28163 1.52667 1.26034 0.95624 1.03617 0.94156 0.85654 0.79599 0.78170 0.79220 1.19202 1.21162 1.16692 1.21471 0.92031 0.93192 1.50372 0.94759 1.19453 0.93959 0.94263 0.97143 1.21516 0.92016 0.98491 1.02177 1.21532 0.94535 0.81158 1.02597 1.45895 1.06552 1.10520 1.71222 1.20372 0.83538 0.89884 0.78071 1.90733 1.55619 1.46285 1.49684 1.19912 0.84306 0.88553 0.77710 1.90705 1.55899 1.45583 1.49083 1.45816 1.05550 1.10358 1.71235 1.20724 0.96015 0.80964 0.94466 0.90294 1.20897 0.94583 1.05358 0.90547 1.19996 0.99864 0.93406 0.95978 1.21275 1.00398 0.96067 0.96541 1.21415 1.00067 1.00167 0.93589 1.21432 1.00212 0.93607 1.00213 1.21441 0.99837 0.96624 0.96940 1.21344 0.99961 1.00152 0.92847 1.22746 0.97662 1.02000 0.95922 1.22990 1.02845 0.90021 1.03551 1.23219 0.97516 1.03320 1.00159 0.92519 0.95651 0.95820 0.91944 0.91849 0.90960 0.91029 0.74569 0.74692 0.86723 0.88400 0.85373 0.85464 0.85091 0.84640 0.84419 0.85526 0.88981 0.87019 0.88929 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 2 C 0.00 0.14 5.47 84.66 0.46 0.60 16 3 Si 0.95 43.99 27.47 68.60 1.88 45.88 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 6 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 7 C -0.53 -30.36 9.66 25.60 0.25 -30.12 16 8 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 9 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 10 C -0.10 -3.79 5.27 30.59 0.16 -3.62 16 11 C 0.12 3.83 5.67 86.38 0.49 4.32 16 12 N -0.69 -19.12 5.55 -464.42 -2.58 -21.70 16 13 C 0.50 13.79 7.89 87.27 0.69 14.48 16 14 O -0.55 -16.80 16.48 -3.24 -0.05 -16.86 16 15 C 0.51 12.34 7.22 87.27 0.63 12.97 16 16 O -0.54 -14.62 13.50 -3.26 -0.04 -14.67 16 17 N -0.68 -11.87 4.50 -443.88 -2.00 -13.87 16 18 C 0.18 2.47 2.26 44.99 0.10 2.57 16 19 H 0.08 1.38 7.34 -2.38 -0.02 1.37 16 20 C -0.08 -0.67 4.87 29.85 0.15 -0.52 16 21 C -0.09 -1.24 4.95 -19.86 -0.10 -1.34 16 22 C -0.12 -1.91 9.10 22.27 0.20 -1.71 16 23 C -0.13 -2.22 10.05 22.27 0.22 -1.99 16 24 C -0.14 -2.14 10.05 22.27 0.22 -1.92 16 25 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 26 C -0.13 -1.70 9.70 22.27 0.22 -1.49 16 27 C -0.16 -2.05 5.36 -10.80 -0.06 -2.11 16 28 C -0.16 -2.00 10.18 30.62 0.31 -1.69 16 29 C -0.21 -3.62 9.73 30.62 0.30 -3.32 16 30 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 31 H 0.03 1.12 7.20 -2.39 -0.02 1.10 16 32 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 33 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.42 10.79 7.95 -92.70 -0.74 10.06 16 38 H 0.42 6.48 7.30 -92.71 -0.68 5.81 16 39 H 0.11 0.59 8.09 -2.38 -0.02 0.57 16 40 H 0.10 0.59 8.09 -2.39 -0.02 0.57 16 41 H 0.13 1.65 7.57 -2.91 -0.02 1.62 16 42 H 0.13 1.83 8.06 -2.91 -0.02 1.80 16 43 H 0.13 1.63 8.06 -2.91 -0.02 1.60 16 44 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 45 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 46 H 0.13 1.12 8.11 -2.39 -0.02 1.11 16 47 H 0.09 1.26 8.05 -2.39 -0.02 1.24 16 48 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 49 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 50 H 0.09 2.15 5.02 -2.39 -0.01 2.14 16 Total: -1.00 -71.36 413.39 1.59 -69.78 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: -0.52 Total: 27.84 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 4.59 Total: -16.89 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -4.28 Total: -95.08 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.10 Total: -31.52 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.88 kcal Total: -71.36 1.59 -69.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323070233.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.223 kcal (2) G-P(sol) polarization free energy of solvation -71.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds