Wall clock time and date at job start Wed Apr 1 2020 03:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86807 * 119.99539 * 2 1 4 4 H 1.48503 * 109.46869 * 269.99312 * 3 2 1 5 5 H 1.48493 * 109.47171 * 29.99629 * 3 2 1 6 6 H 1.48501 * 109.46913 * 149.99844 * 3 2 1 7 7 C 1.38808 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00456 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99652 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99847 * 177.14689 * 9 7 2 11 11 C 1.52995 * 115.55023 * 295.38923 * 10 9 7 12 12 N 1.46503 * 109.47233 * 279.53733 * 11 10 9 13 13 C 1.34777 * 120.00042 * 175.78973 * 12 11 10 14 14 O 1.21283 * 120.00086 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99654 * 179.97438 * 13 12 11 16 16 H 1.09001 * 110.33088 * 54.20754 * 15 13 12 17 17 C 1.54477 * 110.37709 * 291.83456 * 15 13 12 18 18 C 1.54505 * 104.06584 * 217.19250 * 17 15 13 19 19 C 1.54484 * 104.06292 * 0.02562 * 18 17 15 20 20 H 1.09006 * 110.36683 * 265.03901 * 19 18 17 21 21 C 1.52992 * 110.37626 * 142.81267 * 19 18 17 22 22 C 1.50702 * 109.47343 * 174.99910 * 21 19 18 23 23 C 1.38230 * 119.99559 * 269.72464 * 22 21 19 24 24 C 1.38240 * 119.99800 * 179.76477 * 23 22 21 25 25 C 1.38242 * 119.99882 * 0.50580 * 24 23 22 26 26 C 1.38232 * 119.99503 * 359.74534 * 25 24 23 27 27 C 1.38232 * 120.00571 * 0.02562 * 26 25 24 28 28 O 1.44423 * 104.80533 * 23.97412 * 19 18 17 29 29 C 1.53003 * 117.49501 * 81.06242 * 10 9 7 30 30 C 1.52998 * 117.49706 * 149.71816 * 10 9 7 31 31 H 0.96996 * 120.00264 * 0.02562 * 1 2 3 32 32 H 0.96995 * 120.00252 * 357.15636 * 9 7 2 33 33 H 1.09005 * 109.47256 * 159.54030 * 11 10 9 34 34 H 1.09000 * 109.47591 * 39.53977 * 11 10 9 35 35 H 0.96996 * 120.00004 * 355.78853 * 12 11 10 36 36 H 1.09000 * 110.50789 * 98.54486 * 17 15 13 37 37 H 1.09008 * 110.50811 * 335.83743 * 17 15 13 38 38 H 1.08998 * 110.51306 * 241.35757 * 18 17 15 39 39 H 1.09007 * 110.51185 * 118.64142 * 18 17 15 40 40 H 1.09008 * 109.46885 * 294.99342 * 21 19 18 41 41 H 1.08993 * 109.47462 * 54.99384 * 21 19 18 42 42 H 1.07994 * 120.00466 * 359.97438 * 23 22 21 43 43 H 1.08004 * 120.00195 * 180.23288 * 24 23 22 44 44 H 1.07996 * 119.99706 * 179.72766 * 25 24 23 45 45 H 1.08000 * 119.99450 * 179.97438 * 26 25 24 46 46 H 1.08000 * 119.99992 * 179.97438 * 27 26 25 47 47 H 1.09002 * 117.49457 * 215.00548 * 29 10 9 48 48 H 1.09002 * 117.49770 * 0.02562 * 29 10 9 49 49 H 1.09005 * 117.50015 * 359.97438 * 30 10 9 50 50 H 1.08996 * 117.50295 * 144.97455 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0569 -3.6559 -0.0621 11 6 2.8452 -3.9002 -1.3503 12 7 1.9366 -4.3774 -2.3958 13 6 2.3955 -4.5790 -3.6469 14 8 3.5607 -4.3659 -3.9071 15 6 1.4609 -5.0704 -4.7222 16 1 0.5895 -4.4195 -4.7930 17 6 1.0269 -6.5247 -4.4342 18 6 0.9641 -7.1815 -5.8312 19 6 1.3683 -6.0465 -6.7981 20 1 0.4815 -5.5477 -7.1895 21 6 2.2163 -6.6002 -7.9448 22 6 2.4957 -5.5024 -8.9386 23 6 1.6305 -5.2904 -9.9956 24 6 1.8841 -4.2802 -10.9045 25 6 3.0087 -3.4888 -10.7624 26 6 3.8766 -3.7042 -9.7083 27 6 3.6204 -4.7113 -8.7967 28 8 2.1461 -5.1346 -5.9923 29 6 2.6492 -4.1949 1.2417 30 6 1.4244 -4.8706 0.6202 31 1 -0.4850 0.8400 -0.0004 32 1 0.3566 -2.3885 0.0418 33 1 3.6154 -4.6498 -1.1685 34 1 3.3127 -2.9696 -1.6722 35 1 1.0048 -4.5482 -2.1876 36 1 0.0462 -6.5435 -3.9588 37 1 1.7652 -7.0269 -3.8089 38 1 -0.0476 -7.5250 -6.0467 39 1 1.6714 -8.0084 -5.8967 40 1 3.1582 -6.9805 -7.5492 41 1 1.6768 -7.4085 -8.4383 42 1 0.7545 -5.9117 -10.1094 43 1 1.2061 -4.1121 -11.7283 44 1 3.2091 -2.7024 -11.4750 45 1 4.7553 -3.0862 -9.5975 46 1 4.2988 -4.8799 -7.9734 47 1 3.6006 -4.7234 1.1815 48 1 2.4945 -3.6062 2.1459 49 1 0.4644 -4.7262 1.1160 50 1 1.5695 -5.8437 0.1511 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323493464.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:41 Heat of formation + Delta-G solvation = -23.772720 kcal Electronic energy + Delta-G solvation = -29620.448172 eV Core-core repulsion = 25613.307919 eV Total energy + Delta-G solvation = -4007.140253 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.36638 -39.33733 -38.47219 -37.33523 -33.81392 -33.63035 -33.03428 -32.19413 -30.96444 -29.99669 -29.69887 -27.29802 -25.50204 -23.91076 -23.07584 -22.63028 -21.91727 -21.57181 -20.97317 -20.02476 -19.16555 -17.34286 -17.13692 -16.84989 -16.58428 -16.21264 -15.56340 -15.39220 -15.13429 -14.82415 -14.51480 -14.37383 -14.09404 -13.83268 -13.61728 -13.48844 -13.38869 -13.14586 -13.08237 -12.50356 -12.39196 -12.21287 -11.94290 -11.91126 -11.71205 -11.62178 -11.08751 -11.00007 -10.98877 -10.94140 -10.89962 -10.87089 -10.27768 -10.25832 -10.03654 -9.75743 -9.52377 -9.28777 -8.99939 -8.87724 -8.78875 -8.61342 -7.08404 -5.84689 -3.14896 1.24359 1.32865 2.84729 3.12809 3.42092 3.48087 3.48710 3.66868 3.92007 4.32344 4.38317 4.47316 4.58284 4.66520 4.69436 4.75506 4.89724 4.95022 4.97493 5.03803 5.14300 5.20199 5.23060 5.28851 5.35059 5.40922 5.41401 5.44809 5.51606 5.54804 5.60547 5.63701 5.77117 5.80585 5.84268 5.93893 5.98085 6.04900 6.21863 6.35427 6.39811 6.44199 6.51015 6.53517 6.66083 6.67868 6.73944 6.85973 6.92533 7.68748 7.85766 8.33302 8.54189 9.44987 9.97730 10.32771 11.37274 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010970 B = 0.002531 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.734005 B =11061.487449 C =12717.049028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.907 3.093 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.238 4.238 8 H 0.073 0.927 9 N -0.688 5.688 10 C 0.129 3.871 11 C 0.149 3.851 12 N -0.708 5.708 13 C 0.516 3.484 14 O -0.529 6.529 15 C 0.058 3.942 16 H 0.094 0.906 17 C -0.143 4.143 18 C -0.148 4.148 19 C 0.076 3.924 20 H 0.072 0.928 21 C -0.074 4.074 22 C -0.082 4.082 23 C -0.121 4.121 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.120 4.120 27 C -0.097 4.097 28 O -0.334 6.334 29 C -0.188 4.188 30 C -0.187 4.187 31 H 0.256 0.744 32 H 0.388 0.612 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.399 0.601 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.126 0.874 47 H 0.083 0.917 48 H 0.095 0.905 49 H 0.092 0.908 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.082 -17.566 -16.539 24.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.369 4.369 8 H 0.091 0.909 9 N -0.328 5.328 10 C 0.035 3.965 11 C 0.024 3.976 12 N -0.359 5.359 13 C 0.300 3.700 14 O -0.405 6.405 15 C -0.004 4.004 16 H 0.111 0.889 17 C -0.181 4.181 18 C -0.186 4.186 19 C 0.018 3.982 20 H 0.090 0.910 21 C -0.111 4.111 22 C -0.082 4.082 23 C -0.139 4.139 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.138 4.138 27 C -0.115 4.115 28 O -0.252 6.252 29 C -0.229 4.229 30 C -0.224 4.224 31 H 0.066 0.934 32 H 0.223 0.777 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.233 0.767 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.144 0.856 47 H 0.101 0.899 48 H 0.114 0.886 49 H 0.110 0.890 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.071 -17.099 -16.795 23.992 hybrid contribution -0.610 0.974 0.253 1.176 sum 0.462 -16.125 -16.542 23.106 Atomic orbital electron populations 1.69650 1.05125 1.25873 1.57317 1.24748 0.95530 0.97770 1.02509 0.86183 0.78742 0.83597 0.77664 1.21564 1.21750 1.20582 1.19165 0.91181 0.83487 1.43037 0.90937 1.41786 1.05336 0.98425 1.87237 1.20151 0.98335 0.87503 0.90505 1.21260 0.90999 0.99294 0.86095 1.45784 1.14050 1.67200 1.08908 1.20056 0.88611 0.78313 0.83016 1.90700 1.17822 1.50657 1.81299 1.22851 0.94710 0.97411 0.85409 0.88869 1.22892 1.02941 0.94118 0.98171 1.22999 1.02669 0.98847 0.94082 1.23038 0.94010 0.89571 0.91567 0.91020 1.20678 1.01281 0.95714 0.93408 1.19772 0.95226 0.97575 0.95617 1.21009 0.99217 0.98621 0.95012 1.21087 0.97651 0.96106 0.99403 1.21144 0.95138 0.99641 0.98410 1.21196 0.99696 0.97952 0.94932 1.21151 0.97143 0.94857 0.98333 1.89321 1.48500 1.64937 1.22421 1.23381 0.95939 1.03957 0.99591 1.23078 0.98137 0.96025 1.05204 0.93413 0.77734 0.92492 0.90223 0.76682 0.89506 0.90089 0.90109 0.90223 0.89843 0.89552 0.86338 0.86336 0.86362 0.86122 0.85637 0.89893 0.88607 0.88989 0.89459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.24 -6.42 9.53 -15.06 -0.14 -6.56 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.69 -16.32 5.50 -47.23 -0.26 -16.58 16 10 C 0.13 2.42 2.17 -131.82 -0.29 2.13 16 11 C 0.15 2.72 5.72 -4.04 -0.02 2.70 16 12 N -0.71 -11.33 5.52 -60.29 -0.33 -11.66 16 13 C 0.52 8.75 7.07 -10.99 -0.08 8.67 16 14 O -0.53 -11.24 16.55 -13.64 -0.23 -11.46 16 15 C 0.06 0.76 3.71 -27.11 -0.10 0.66 16 16 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 17 C -0.14 -1.34 6.62 -25.17 -0.17 -1.51 16 18 C -0.15 -1.17 6.63 -25.16 -0.17 -1.33 16 19 C 0.08 0.76 3.23 -25.96 -0.08 0.68 16 20 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 21 C -0.07 -0.66 4.97 -27.89 -0.14 -0.80 16 22 C -0.08 -0.88 5.04 -104.63 -0.53 -1.40 16 23 C -0.12 -1.15 9.70 -39.58 -0.38 -1.54 16 24 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 25 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 26 C -0.12 -1.34 10.05 -39.59 -0.40 -1.73 16 27 C -0.10 -1.17 9.61 -39.59 -0.38 -1.55 16 28 O -0.33 -4.82 10.41 -54.43 -0.57 -5.39 16 29 C -0.19 -3.16 10.11 -26.69 -0.27 -3.43 16 30 C -0.19 -2.83 10.06 -26.70 -0.27 -3.09 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.39 9.74 8.03 -40.82 -0.33 9.41 16 33 H 0.06 0.97 7.94 -51.93 -0.41 0.56 16 34 H 0.08 1.74 7.76 -51.93 -0.40 1.34 16 35 H 0.40 5.55 8.41 -40.82 -0.34 5.21 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.80 7.87 -51.92 -0.41 0.40 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.58 7.87 -51.92 -0.41 0.17 16 40 H 0.08 0.79 8.09 -51.92 -0.42 0.37 16 41 H 0.09 0.56 8.08 -51.93 -0.42 0.14 16 42 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 46 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 47 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 48 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 49 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 50 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 417.28 15.07 6.29 6.29 Total: -1.00 -33.42 417.28 -11.88 -45.31 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -8.18 Total: 14.48 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -4.31 Total: -11.70 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.13 Total: -54.92 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.79 Total: -16.86 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.42 -11.88 -45.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323493464.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.534 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds