Wall clock time and date at job start Wed Apr 1 2020 03:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86807 * 119.99539 * 2 1 4 4 H 1.48503 * 109.46869 * 269.99312 * 3 2 1 5 5 H 1.48493 * 109.47171 * 29.99629 * 3 2 1 6 6 H 1.48501 * 109.46913 * 149.99844 * 3 2 1 7 7 C 1.38808 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00456 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99652 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99847 * 177.14689 * 9 7 2 11 11 C 1.52995 * 115.55023 * 295.38923 * 10 9 7 12 12 N 1.46503 * 109.47233 * 279.53733 * 11 10 9 13 13 C 1.34777 * 120.00042 * 175.78973 * 12 11 10 14 14 O 1.21283 * 120.00086 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99654 * 179.97438 * 13 12 11 16 16 H 1.09001 * 110.33088 * 54.20754 * 15 13 12 17 17 C 1.54477 * 110.37709 * 291.83456 * 15 13 12 18 18 C 1.54505 * 104.06584 * 217.19250 * 17 15 13 19 19 C 1.54484 * 104.06292 * 0.02562 * 18 17 15 20 20 H 1.09006 * 110.36683 * 265.03901 * 19 18 17 21 21 C 1.52992 * 110.37626 * 142.81267 * 19 18 17 22 22 C 1.50702 * 109.47343 * 174.99910 * 21 19 18 23 23 C 1.38230 * 119.99559 * 269.72464 * 22 21 19 24 24 C 1.38240 * 119.99800 * 179.76477 * 23 22 21 25 25 C 1.38242 * 119.99882 * 0.50580 * 24 23 22 26 26 C 1.38232 * 119.99503 * 359.74534 * 25 24 23 27 27 C 1.38232 * 120.00571 * 0.02562 * 26 25 24 28 28 O 1.44423 * 104.80533 * 23.97412 * 19 18 17 29 29 C 1.53003 * 117.49501 * 81.06242 * 10 9 7 30 30 C 1.52998 * 117.49706 * 149.71816 * 10 9 7 31 31 H 0.96996 * 120.00264 * 0.02562 * 1 2 3 32 32 H 0.96995 * 120.00252 * 357.15636 * 9 7 2 33 33 H 1.09005 * 109.47256 * 159.54030 * 11 10 9 34 34 H 1.09000 * 109.47591 * 39.53977 * 11 10 9 35 35 H 0.96996 * 120.00004 * 355.78853 * 12 11 10 36 36 H 1.09000 * 110.50789 * 98.54486 * 17 15 13 37 37 H 1.09008 * 110.50811 * 335.83743 * 17 15 13 38 38 H 1.08998 * 110.51306 * 241.35757 * 18 17 15 39 39 H 1.09007 * 110.51185 * 118.64142 * 18 17 15 40 40 H 1.09008 * 109.46885 * 294.99342 * 21 19 18 41 41 H 1.08993 * 109.47462 * 54.99384 * 21 19 18 42 42 H 1.07994 * 120.00466 * 359.97438 * 23 22 21 43 43 H 1.08004 * 120.00195 * 180.23288 * 24 23 22 44 44 H 1.07996 * 119.99706 * 179.72766 * 25 24 23 45 45 H 1.08000 * 119.99450 * 179.97438 * 26 25 24 46 46 H 1.08000 * 119.99992 * 179.97438 * 27 26 25 47 47 H 1.09002 * 117.49457 * 215.00548 * 29 10 9 48 48 H 1.09002 * 117.49770 * 0.02562 * 29 10 9 49 49 H 1.09005 * 117.50015 * 359.97438 * 30 10 9 50 50 H 1.08996 * 117.50295 * 144.97455 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0569 -3.6559 -0.0621 11 6 2.8452 -3.9002 -1.3503 12 7 1.9366 -4.3774 -2.3958 13 6 2.3955 -4.5790 -3.6469 14 8 3.5607 -4.3659 -3.9071 15 6 1.4609 -5.0704 -4.7222 16 1 0.5895 -4.4195 -4.7930 17 6 1.0269 -6.5247 -4.4342 18 6 0.9641 -7.1815 -5.8312 19 6 1.3683 -6.0465 -6.7981 20 1 0.4815 -5.5477 -7.1895 21 6 2.2163 -6.6002 -7.9448 22 6 2.4957 -5.5024 -8.9386 23 6 1.6305 -5.2904 -9.9956 24 6 1.8841 -4.2802 -10.9045 25 6 3.0087 -3.4888 -10.7624 26 6 3.8766 -3.7042 -9.7083 27 6 3.6204 -4.7113 -8.7967 28 8 2.1461 -5.1346 -5.9923 29 6 2.6492 -4.1949 1.2417 30 6 1.4244 -4.8706 0.6202 31 1 -0.4850 0.8400 -0.0004 32 1 0.3566 -2.3885 0.0418 33 1 3.6154 -4.6498 -1.1685 34 1 3.3127 -2.9696 -1.6722 35 1 1.0048 -4.5482 -2.1876 36 1 0.0462 -6.5435 -3.9588 37 1 1.7652 -7.0269 -3.8089 38 1 -0.0476 -7.5250 -6.0467 39 1 1.6714 -8.0084 -5.8967 40 1 3.1582 -6.9805 -7.5492 41 1 1.6768 -7.4085 -8.4383 42 1 0.7545 -5.9117 -10.1094 43 1 1.2061 -4.1121 -11.7283 44 1 3.2091 -2.7024 -11.4750 45 1 4.7553 -3.0862 -9.5975 46 1 4.2988 -4.8799 -7.9734 47 1 3.6006 -4.7234 1.1815 48 1 2.4945 -3.6062 2.1459 49 1 0.4644 -4.7262 1.1160 50 1 1.5695 -5.8437 0.1511 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323493464.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:40 Heat of formation + Delta-G solvation = -44.025752 kcal Electronic energy + Delta-G solvation = -29621.326409 eV Core-core repulsion = 25613.307919 eV Total energy + Delta-G solvation = -4008.018490 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.41264 -40.29878 -39.56720 -38.76240 -35.37040 -34.85985 -34.41243 -33.02990 -31.73828 -31.65874 -30.88150 -28.42846 -26.58578 -25.93404 -23.97701 -23.43182 -23.21170 -22.33267 -21.74321 -21.31166 -20.66758 -19.17095 -18.45763 -17.77093 -17.46690 -17.30981 -17.00214 -16.48277 -16.13089 -15.97590 -15.85470 -15.63206 -15.39171 -15.13354 -14.87985 -14.65411 -14.28700 -14.25200 -14.09744 -13.80726 -13.50459 -13.37360 -13.02922 -12.94657 -12.88367 -12.71195 -12.51142 -12.45374 -12.28338 -12.21309 -11.90665 -11.83553 -11.72876 -11.67816 -11.55979 -11.08723 -10.96775 -10.80012 -10.49905 -10.06958 -9.79603 -9.56684 -9.04167 -7.98701 -5.26389 0.46673 0.52660 1.42870 1.45063 1.51994 1.54657 1.94095 2.50459 2.87546 2.95722 3.13192 3.36679 3.52672 3.63308 3.66692 3.82092 3.85312 3.93214 4.00336 4.13234 4.17047 4.19484 4.20362 4.29155 4.31916 4.33072 4.47295 4.63080 4.66125 4.67797 4.76324 4.83278 4.83560 4.92323 4.93217 4.96179 5.04486 5.06468 5.19124 5.19417 5.19704 5.23127 5.38127 5.45884 5.52535 5.59110 5.64636 5.70845 5.88899 6.16334 6.24897 6.57740 7.23305 7.31320 8.04994 8.28153 9.23678 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010970 B = 0.002531 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.734005 B =11061.487449 C =12717.049028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.068 4.068 3 Si 0.961 3.039 4 H -0.294 1.294 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.229 4.229 8 H 0.067 0.933 9 N -0.698 5.698 10 C 0.098 3.902 11 C 0.160 3.840 12 N -0.697 5.697 13 C 0.510 3.490 14 O -0.581 6.581 15 C 0.057 3.943 16 H 0.103 0.897 17 C -0.136 4.136 18 C -0.139 4.139 19 C 0.069 3.931 20 H 0.078 0.922 21 C -0.070 4.070 22 C -0.092 4.092 23 C -0.123 4.123 24 C -0.128 4.128 25 C -0.135 4.135 26 C -0.139 4.139 27 C -0.125 4.125 28 O -0.372 6.372 29 C -0.186 4.186 30 C -0.148 4.148 31 H 0.251 0.749 32 H 0.379 0.621 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.412 0.588 36 H 0.115 0.885 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.148 0.852 43 H 0.145 0.855 44 H 0.137 0.863 45 H 0.123 0.877 46 H 0.104 0.896 47 H 0.106 0.894 48 H 0.079 0.921 49 H 0.094 0.906 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.733 -20.187 -17.299 26.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.261 4.261 3 Si 0.791 3.209 4 H -0.222 1.222 5 H -0.218 1.218 6 H -0.197 1.197 7 C -0.361 4.361 8 H 0.085 0.915 9 N -0.336 5.336 10 C 0.006 3.994 11 C 0.034 3.966 12 N -0.349 5.349 13 C 0.296 3.704 14 O -0.461 6.461 15 C -0.004 4.004 16 H 0.121 0.879 17 C -0.174 4.174 18 C -0.176 4.176 19 C 0.012 3.988 20 H 0.096 0.904 21 C -0.107 4.107 22 C -0.092 4.092 23 C -0.140 4.140 24 C -0.146 4.146 25 C -0.153 4.153 26 C -0.157 4.157 27 C -0.144 4.144 28 O -0.291 6.291 29 C -0.226 4.226 30 C -0.186 4.186 31 H 0.060 0.940 32 H 0.212 0.788 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.248 0.752 36 H 0.134 0.866 37 H 0.093 0.907 38 H 0.130 0.870 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.138 0.862 42 H 0.165 0.835 43 H 0.163 0.837 44 H 0.155 0.845 45 H 0.141 0.859 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.097 0.903 49 H 0.113 0.887 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.575 -19.772 -17.537 26.435 hybrid contribution -0.034 1.731 0.461 1.792 sum -0.609 -18.041 -17.076 24.848 Atomic orbital electron populations 1.69764 1.06142 1.25957 1.59490 1.25396 0.96324 1.00497 1.03878 0.85322 0.77996 0.80452 0.77142 1.22169 1.21807 1.19674 1.19388 0.91101 0.84962 1.40662 0.91498 1.41812 1.05012 0.99419 1.87398 1.20328 1.00480 0.87311 0.91320 1.20979 0.91569 0.97726 0.86324 1.45699 1.14359 1.66390 1.08457 1.20878 0.88569 0.77151 0.83764 1.90670 1.20314 1.52967 1.82160 1.22924 0.93366 1.00082 0.83994 0.87913 1.22932 1.04041 0.91049 0.99361 1.23010 1.04638 0.97871 0.92078 1.23291 0.93855 0.89827 0.91828 0.90369 1.20738 1.01136 0.95911 0.92930 1.20035 0.94853 0.97784 0.96508 1.21362 0.99664 0.98809 0.94191 1.21490 0.97571 0.95531 0.99973 1.21431 0.95216 1.00364 0.98287 1.21376 1.00510 0.98192 0.95630 1.21187 0.98200 0.96443 0.98524 1.89314 1.50057 1.66484 1.23275 1.23395 0.98097 1.03799 0.97321 1.23179 0.97381 0.95590 1.02424 0.94000 0.78803 0.90937 0.94757 0.75186 0.86626 0.90715 0.86994 0.89536 0.91056 0.86247 0.83455 0.83709 0.84528 0.85925 0.87760 0.87569 0.90264 0.88729 0.85933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.70 13.06 21.65 0.28 -57.42 16 2 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 3 Si 0.96 47.03 29.55 68.60 2.03 49.06 16 4 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.23 -12.59 9.53 84.03 0.80 -11.79 16 8 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 9 N -0.70 -33.33 5.50 -303.35 -1.67 -34.99 16 10 C 0.10 3.58 2.17 3.60 0.01 3.58 16 11 C 0.16 5.85 5.72 86.38 0.49 6.34 16 12 N -0.70 -21.97 5.52 -463.05 -2.55 -24.52 16 13 C 0.51 17.49 7.07 87.66 0.62 18.11 16 14 O -0.58 -25.82 16.55 15.32 0.25 -25.57 16 15 C 0.06 1.47 3.71 30.35 0.11 1.58 16 16 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 17 C -0.14 -2.16 6.62 31.61 0.21 -1.95 16 18 C -0.14 -1.70 6.63 31.61 0.21 -1.49 16 19 C 0.07 1.26 3.23 31.10 0.10 1.36 16 20 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 21 C -0.07 -1.16 4.97 29.85 0.15 -1.01 16 22 C -0.09 -1.92 5.04 -19.87 -0.10 -2.02 16 23 C -0.12 -2.09 9.70 22.27 0.22 -1.88 16 24 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 25 C -0.14 -2.65 10.05 22.27 0.22 -2.42 16 26 C -0.14 -3.27 10.05 22.27 0.22 -3.05 16 27 C -0.13 -3.22 9.61 22.27 0.21 -3.00 16 28 O -0.37 -10.83 10.41 -130.62 -1.36 -12.19 16 29 C -0.19 -5.89 10.11 30.62 0.31 -5.58 16 30 C -0.15 -4.03 10.06 30.62 0.31 -3.72 16 31 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.38 19.18 8.03 -92.71 -0.74 18.44 16 33 H 0.07 2.42 7.94 -2.38 -0.02 2.40 16 34 H 0.03 1.56 7.76 -2.39 -0.02 1.54 16 35 H 0.41 10.80 8.41 -92.71 -0.78 10.02 16 36 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.30 7.87 -2.38 -0.02 1.28 16 38 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.09 0.97 7.87 -2.38 -0.02 0.95 16 40 H 0.07 1.34 8.09 -2.38 -0.02 1.32 16 41 H 0.12 1.14 8.08 -2.39 -0.02 1.12 16 42 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 43 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 44 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 45 H 0.12 2.63 8.06 -2.91 -0.02 2.60 16 46 H 0.10 2.98 8.06 -2.91 -0.02 2.96 16 47 H 0.11 2.87 8.08 -2.39 -0.02 2.85 16 48 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 49 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 50 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -76.79 417.28 1.19 -75.60 By element: Atomic # 1 Polarization: 42.96 SS G_CDS: -0.58 Total: 42.38 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 4.79 Total: -12.35 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -3.94 Total: -116.93 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -1.11 Total: -37.76 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -76.79 1.19 -75.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323493464.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.578 kcal (2) G-P(sol) polarization free energy of solvation -76.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds