Wall clock time and date at job start Wed Apr 1 2020 02:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00046 * 2 1 4 4 H 1.48501 * 109.47224 * 89.99882 * 3 2 1 5 5 H 1.48496 * 109.46942 * 210.00135 * 3 2 1 6 6 H 1.48498 * 109.46991 * 330.00333 * 3 2 1 7 7 C 1.38813 * 119.99470 * 179.72582 * 2 1 3 8 8 H 1.08005 * 119.99504 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00238 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99584 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46816 * 175.05069 * 10 9 7 12 12 H 1.09002 * 109.58766 * 298.29480 * 11 10 9 13 13 C 1.53191 * 109.58844 * 58.57824 * 11 10 9 14 14 C 1.53033 * 109.31607 * 174.42202 * 13 11 10 15 15 C 1.53043 * 109.53938 * 298.63571 * 14 13 11 16 16 C 1.53184 * 109.31322 * 61.36113 * 15 14 13 17 17 N 1.46929 * 109.58660 * 178.00991 * 11 10 9 18 18 C 1.34777 * 120.62974 * 6.61052 * 17 11 10 19 19 O 1.21278 * 119.99786 * 5.36882 * 18 17 11 20 20 C 1.50697 * 120.00048 * 185.37740 * 18 17 11 21 21 C 1.52993 * 109.47340 * 179.97438 * 20 18 17 22 22 H 1.09000 * 110.13203 * 305.69696 * 21 20 18 23 23 O 1.43940 * 110.15460 * 67.39829 * 21 20 18 24 24 C 1.44036 * 104.90592 * 147.51900 * 23 21 20 25 25 C 1.51085 * 105.98526 * 331.64283 * 24 23 21 26 26 C 1.37967 * 132.68053 * 197.63610 * 25 24 23 27 27 C 1.38299 * 119.91712 * 180.02562 * 26 25 24 28 28 C 1.38259 * 120.04368 * 359.97438 * 27 26 25 29 29 C 1.38302 * 120.03957 * 0.02562 * 28 27 26 30 30 C 1.37971 * 119.91653 * 359.96462 * 29 28 27 31 31 H 0.97004 * 120.00065 * 180.02562 * 1 2 3 32 32 H 0.96994 * 120.00386 * 0.02562 * 9 7 2 33 33 H 1.09004 * 109.47251 * 295.05037 * 10 9 7 34 34 H 1.08997 * 109.47237 * 55.05296 * 10 9 7 35 35 H 1.09000 * 109.49676 * 294.37334 * 13 11 10 36 36 H 1.09007 * 109.49936 * 54.46686 * 13 11 10 37 37 H 1.09004 * 109.46548 * 58.65472 * 14 13 11 38 38 H 1.09005 * 109.46471 * 178.61703 * 14 13 11 39 39 H 1.08997 * 109.50116 * 181.31884 * 15 14 13 40 40 H 1.09008 * 109.49546 * 301.37871 * 15 14 13 41 41 H 1.08999 * 109.58894 * 65.15590 * 16 15 14 42 42 H 1.09006 * 109.58986 * 185.43758 * 16 15 14 43 43 H 1.08998 * 109.46971 * 299.99970 * 20 18 17 44 44 H 1.09005 * 109.47128 * 59.99602 * 20 18 17 45 45 H 1.09002 * 110.17743 * 212.49146 * 24 23 21 46 46 H 1.08992 * 110.15557 * 90.78323 * 24 23 21 47 47 H 1.07996 * 120.04693 * 0.02805 * 26 25 24 48 48 H 1.07996 * 119.98117 * 180.02562 * 27 26 25 49 49 H 1.07998 * 119.98534 * 180.02562 * 28 27 26 50 50 H 1.08001 * 120.04384 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4477 2.6526 -0.7000 7 6 2.0102 -1.2022 0.0058 8 1 3.0903 -1.2022 0.0053 9 7 1.3255 -2.3880 0.0120 10 6 2.0580 -3.6567 0.0186 11 6 1.0684 -4.8163 0.1491 12 1 0.5302 -4.7328 1.0933 13 6 0.0731 -4.7755 -1.0147 14 6 -0.8248 -6.0134 -0.9565 15 6 0.0316 -7.2740 -1.0972 16 6 1.0263 -7.3431 0.0656 17 7 1.7962 -6.0920 0.1082 18 6 3.1438 -6.1139 0.1061 19 8 3.7673 -5.0819 0.2363 20 6 3.8759 -7.4209 -0.0582 21 6 5.3844 -7.1680 -0.0262 22 1 5.6550 -6.4181 -0.7695 23 8 5.7868 -6.7337 1.2858 24 6 7.1181 -7.2562 1.4570 25 6 7.1857 -8.5073 0.6128 26 6 8.0483 -9.5841 0.6039 27 6 7.8618 -10.6098 -0.3049 28 6 6.8120 -10.5565 -1.2030 29 6 5.9473 -9.4772 -1.1941 30 6 6.1333 -8.4540 -0.2873 31 1 -0.4850 -0.8401 0.0004 32 1 0.3556 -2.3880 0.0120 33 1 2.6166 -3.7587 -0.9119 34 1 2.7495 -3.6726 0.8610 35 1 -0.5399 -3.8775 -0.9379 36 1 0.6177 -4.7651 -1.9590 37 1 -1.3504 -6.0362 -0.0018 38 1 -1.5501 -5.9745 -1.7693 39 1 -0.6110 -8.1542 -1.0791 40 1 0.5761 -7.2404 -2.0409 41 1 0.4845 -7.4682 1.0031 42 1 1.7021 -8.1858 -0.0811 43 1 3.6028 -8.0948 0.7538 44 1 3.6036 -7.8724 -1.0122 45 1 7.2945 -7.5000 2.5046 46 1 7.8538 -6.5299 1.1117 47 1 8.8681 -9.6260 1.3056 48 1 8.5361 -11.4533 -0.3125 49 1 6.6670 -11.3582 -1.9119 50 1 5.1270 -9.4357 -1.8953 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326760638.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:05 Heat of formation + Delta-G solvation = -17.296769 kcal Electronic energy + Delta-G solvation = -30695.543677 eV Core-core repulsion = 26688.684243 eV Total energy + Delta-G solvation = -4006.859435 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.15199 -40.16345 -37.73335 -37.07178 -34.97779 -33.18151 -32.60073 -31.98457 -31.55273 -30.23657 -29.47974 -26.79665 -25.70020 -24.52076 -24.24479 -23.02291 -21.89860 -21.64744 -21.06076 -20.46852 -18.82335 -17.41071 -17.10476 -16.75965 -16.41165 -16.23207 -15.82352 -15.57779 -15.05607 -14.68584 -14.55688 -14.34460 -14.02751 -13.90853 -13.70921 -13.54470 -13.45101 -13.21674 -13.11474 -12.98966 -12.61609 -12.39142 -12.27942 -12.05968 -11.84453 -11.58780 -11.51337 -11.20331 -10.99787 -10.87635 -10.61364 -10.59356 -10.53622 -10.27444 -10.15882 -9.89447 -9.27564 -9.02769 -8.93459 -8.82164 -8.62301 -8.30922 -6.77370 -5.94209 -2.90734 0.87202 0.96077 2.86089 3.05780 3.32457 3.62405 3.68011 3.68986 3.81864 3.88374 4.27765 4.50974 4.62142 4.62691 4.68676 4.78375 4.82253 4.84838 4.97300 5.00387 5.08170 5.09597 5.17393 5.21351 5.26136 5.35061 5.36961 5.47869 5.53000 5.57546 5.64999 5.69483 5.75491 5.78952 5.81447 5.95171 5.98381 5.98906 6.06008 6.08154 6.12824 6.21713 6.23769 6.50596 6.50937 6.63650 6.73018 7.10979 7.32191 7.62376 8.03070 8.47528 8.92226 9.42511 10.28365 10.44129 11.55064 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012057 B = 0.002861 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.740344 B = 9785.622266 C =11691.918192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.053 4.053 3 Si 1.083 2.917 4 H -0.297 1.297 5 H -0.296 1.296 6 H -0.289 1.289 7 C -0.314 4.314 8 H 0.064 0.936 9 N -0.749 5.749 10 C 0.167 3.833 11 C 0.140 3.860 12 H 0.068 0.932 13 C -0.126 4.126 14 C -0.120 4.120 15 C -0.134 4.134 16 C 0.108 3.892 17 N -0.610 5.610 18 C 0.508 3.492 19 O -0.502 6.502 20 C -0.136 4.136 21 C 0.138 3.862 22 H 0.095 0.905 23 O -0.337 6.337 24 C 0.086 3.914 25 C -0.127 4.127 26 C -0.096 4.096 27 C -0.117 4.117 28 C -0.117 4.117 29 C -0.092 4.092 30 C -0.124 4.124 31 H 0.252 0.748 32 H 0.361 0.639 33 H 0.023 0.977 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.125 0.875 48 H 0.127 0.873 49 H 0.127 0.873 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.913 -28.407 -1.832 30.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.249 4.249 3 Si 0.914 3.086 4 H -0.225 1.225 5 H -0.222 1.222 6 H -0.216 1.216 7 C -0.445 4.445 8 H 0.082 0.918 9 N -0.397 5.397 10 C 0.041 3.959 11 C 0.037 3.963 12 H 0.086 0.914 13 C -0.164 4.164 14 C -0.158 4.158 15 C -0.172 4.172 16 C -0.015 4.015 17 N -0.345 5.345 18 C 0.296 3.704 19 O -0.376 6.376 20 C -0.176 4.176 21 C 0.080 3.920 22 H 0.112 0.888 23 O -0.255 6.255 24 C 0.009 3.991 25 C -0.127 4.127 26 C -0.114 4.114 27 C -0.135 4.135 28 C -0.135 4.135 29 C -0.110 4.110 30 C -0.124 4.124 31 H 0.063 0.937 32 H 0.194 0.806 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.117 0.883 44 H 0.121 0.879 45 H 0.114 0.886 46 H 0.097 0.903 47 H 0.143 0.857 48 H 0.145 0.855 49 H 0.145 0.855 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.247 -26.050 -1.602 28.039 hybrid contribution -0.088 -2.033 -0.186 2.044 sum 10.160 -28.083 -1.788 29.918 Atomic orbital electron populations 1.70856 1.05957 1.28082 1.55008 1.25728 0.97122 1.00828 1.01223 0.83184 0.73851 0.75362 0.76162 1.22472 1.22242 1.21562 1.20085 0.92143 0.85704 1.46618 0.91765 1.42620 1.04669 1.01471 1.90944 1.21221 0.91488 0.82798 1.00433 1.21560 0.93697 0.83157 0.97899 0.91427 1.21926 0.97555 0.98082 0.98884 1.21545 0.97795 0.94449 1.02023 1.21916 0.97989 0.98630 0.98682 1.21702 0.94586 0.86276 0.98933 1.48150 1.05227 1.07031 1.74137 1.20396 0.82027 0.90843 0.77183 1.90861 1.66614 1.33142 1.46943 1.21871 0.93865 0.97360 1.04510 1.21060 0.92360 0.91520 0.87084 0.88793 1.89295 1.29273 1.74557 1.32366 1.21812 0.86444 0.90979 0.99837 1.21151 0.96423 0.96715 0.98424 1.20419 0.98911 0.92739 0.99310 1.21146 0.98173 0.98582 0.95550 1.21143 0.95072 0.98137 0.99161 1.20446 0.99730 0.92775 0.98083 1.21084 0.97692 0.96486 0.97151 0.93686 0.80581 0.95910 0.92393 0.90148 0.91668 0.91892 0.91797 0.91014 0.91561 0.91460 0.90085 0.88332 0.87900 0.88560 0.90336 0.85699 0.85522 0.85460 0.85648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -30.81 13.70 55.49 0.76 -30.05 16 2 C -0.05 -1.63 5.50 -17.43 -0.10 -1.73 16 3 Si 1.08 27.78 29.92 -169.99 -5.09 22.69 16 4 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 5 H -0.30 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.31 -9.66 9.99 -15.06 -0.15 -9.82 16 8 H 0.06 2.00 7.83 -52.48 -0.41 1.59 16 9 N -0.75 -20.60 5.38 -59.91 -0.32 -20.92 16 10 C 0.17 3.95 4.14 -4.04 -0.02 3.93 16 11 C 0.14 2.52 3.10 -67.60 -0.21 2.31 16 12 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 13 C -0.13 -2.04 5.09 -26.62 -0.14 -2.17 16 14 C -0.12 -1.43 5.88 -26.69 -0.16 -1.58 16 15 C -0.13 -1.27 6.08 -26.61 -0.16 -1.43 16 16 C 0.11 1.09 6.34 -3.69 -0.02 1.07 16 17 N -0.61 -8.97 2.98 -165.19 -0.49 -9.46 16 18 C 0.51 8.09 7.44 -10.99 -0.08 8.00 16 19 O -0.50 -10.42 11.09 -5.10 -0.06 -10.47 16 20 C -0.14 -1.53 3.71 -27.89 -0.10 -1.63 16 21 C 0.14 1.72 2.84 -27.70 -0.08 1.64 16 22 H 0.09 1.30 7.95 -51.93 -0.41 0.89 16 23 O -0.34 -4.92 10.83 -45.89 -0.50 -5.41 16 24 C 0.09 0.93 7.63 36.19 0.28 1.20 16 25 C -0.13 -1.27 6.32 -104.40 -0.66 -1.93 16 26 C -0.10 -0.77 10.04 -39.66 -0.40 -1.17 16 27 C -0.12 -0.82 10.05 -39.55 -0.40 -1.21 16 28 C -0.12 -0.83 10.05 -39.55 -0.40 -1.22 16 29 C -0.09 -0.76 9.80 -39.66 -0.39 -1.15 16 30 C -0.12 -1.28 5.72 -104.40 -0.60 -1.87 16 31 H 0.25 8.00 6.77 -40.82 -0.28 7.72 16 32 H 0.36 9.81 5.17 -40.82 -0.21 9.60 16 33 H 0.02 0.59 7.22 -51.93 -0.38 0.21 16 34 H 0.06 1.53 6.25 -51.93 -0.32 1.20 16 35 H 0.08 1.46 6.87 -51.93 -0.36 1.10 16 36 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.61 5.94 -51.93 -0.31 0.30 16 43 H 0.10 0.98 7.73 -51.93 -0.40 0.58 16 44 H 0.10 0.86 7.64 -51.93 -0.40 0.46 16 45 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 48 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 49 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 50 H 0.13 0.79 7.89 -52.49 -0.41 0.38 16 LS Contribution 389.70 15.07 5.87 5.87 Total: -1.00 -37.84 389.70 -11.36 -49.20 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -7.76 Total: 7.31 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -3.78 Total: -8.76 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -0.05 Total: -60.43 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.55 Total: -15.89 kcal Atomic # 14 Polarization: 27.78 SS G_CDS: -5.09 Total: 22.69 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.84 -11.36 -49.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326760638.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.900 kcal (2) G-P(sol) polarization free energy of solvation -37.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds