Wall clock time and date at job start Wed Apr 1 2020 02:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00046 * 2 1 4 4 H 1.48501 * 109.47224 * 89.99882 * 3 2 1 5 5 H 1.48496 * 109.46942 * 210.00135 * 3 2 1 6 6 H 1.48498 * 109.46991 * 330.00333 * 3 2 1 7 7 C 1.38813 * 119.99470 * 179.72582 * 2 1 3 8 8 H 1.08005 * 119.99504 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00238 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99584 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46816 * 175.05069 * 10 9 7 12 12 H 1.09002 * 109.58766 * 298.29480 * 11 10 9 13 13 C 1.53191 * 109.58844 * 58.57824 * 11 10 9 14 14 C 1.53033 * 109.31607 * 174.42202 * 13 11 10 15 15 C 1.53043 * 109.53938 * 298.63571 * 14 13 11 16 16 C 1.53184 * 109.31322 * 61.36113 * 15 14 13 17 17 N 1.46929 * 109.58660 * 178.00991 * 11 10 9 18 18 C 1.34777 * 120.62974 * 6.61052 * 17 11 10 19 19 O 1.21278 * 119.99786 * 5.36882 * 18 17 11 20 20 C 1.50697 * 120.00048 * 185.37740 * 18 17 11 21 21 C 1.52993 * 109.47340 * 179.97438 * 20 18 17 22 22 H 1.09000 * 110.13203 * 305.69696 * 21 20 18 23 23 O 1.43940 * 110.15460 * 67.39829 * 21 20 18 24 24 C 1.44036 * 104.90592 * 147.51900 * 23 21 20 25 25 C 1.51085 * 105.98526 * 331.64283 * 24 23 21 26 26 C 1.37967 * 132.68053 * 197.63610 * 25 24 23 27 27 C 1.38299 * 119.91712 * 180.02562 * 26 25 24 28 28 C 1.38259 * 120.04368 * 359.97438 * 27 26 25 29 29 C 1.38302 * 120.03957 * 0.02562 * 28 27 26 30 30 C 1.37971 * 119.91653 * 359.96462 * 29 28 27 31 31 H 0.97004 * 120.00065 * 180.02562 * 1 2 3 32 32 H 0.96994 * 120.00386 * 0.02562 * 9 7 2 33 33 H 1.09004 * 109.47251 * 295.05037 * 10 9 7 34 34 H 1.08997 * 109.47237 * 55.05296 * 10 9 7 35 35 H 1.09000 * 109.49676 * 294.37334 * 13 11 10 36 36 H 1.09007 * 109.49936 * 54.46686 * 13 11 10 37 37 H 1.09004 * 109.46548 * 58.65472 * 14 13 11 38 38 H 1.09005 * 109.46471 * 178.61703 * 14 13 11 39 39 H 1.08997 * 109.50116 * 181.31884 * 15 14 13 40 40 H 1.09008 * 109.49546 * 301.37871 * 15 14 13 41 41 H 1.08999 * 109.58894 * 65.15590 * 16 15 14 42 42 H 1.09006 * 109.58986 * 185.43758 * 16 15 14 43 43 H 1.08998 * 109.46971 * 299.99970 * 20 18 17 44 44 H 1.09005 * 109.47128 * 59.99602 * 20 18 17 45 45 H 1.09002 * 110.17743 * 212.49146 * 24 23 21 46 46 H 1.08992 * 110.15557 * 90.78323 * 24 23 21 47 47 H 1.07996 * 120.04693 * 0.02805 * 26 25 24 48 48 H 1.07996 * 119.98117 * 180.02562 * 27 26 25 49 49 H 1.07998 * 119.98534 * 180.02562 * 28 27 26 50 50 H 1.08001 * 120.04384 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4477 2.6526 -0.7000 7 6 2.0102 -1.2022 0.0058 8 1 3.0903 -1.2022 0.0053 9 7 1.3255 -2.3880 0.0120 10 6 2.0580 -3.6567 0.0186 11 6 1.0684 -4.8163 0.1491 12 1 0.5302 -4.7328 1.0933 13 6 0.0731 -4.7755 -1.0147 14 6 -0.8248 -6.0134 -0.9565 15 6 0.0316 -7.2740 -1.0972 16 6 1.0263 -7.3431 0.0656 17 7 1.7962 -6.0920 0.1082 18 6 3.1438 -6.1139 0.1061 19 8 3.7673 -5.0819 0.2363 20 6 3.8759 -7.4209 -0.0582 21 6 5.3844 -7.1680 -0.0262 22 1 5.6550 -6.4181 -0.7695 23 8 5.7868 -6.7337 1.2858 24 6 7.1181 -7.2562 1.4570 25 6 7.1857 -8.5073 0.6128 26 6 8.0483 -9.5841 0.6039 27 6 7.8618 -10.6098 -0.3049 28 6 6.8120 -10.5565 -1.2030 29 6 5.9473 -9.4772 -1.1941 30 6 6.1333 -8.4540 -0.2873 31 1 -0.4850 -0.8401 0.0004 32 1 0.3556 -2.3880 0.0120 33 1 2.6166 -3.7587 -0.9119 34 1 2.7495 -3.6726 0.8610 35 1 -0.5399 -3.8775 -0.9379 36 1 0.6177 -4.7651 -1.9590 37 1 -1.3504 -6.0362 -0.0018 38 1 -1.5501 -5.9745 -1.7693 39 1 -0.6110 -8.1542 -1.0791 40 1 0.5761 -7.2404 -2.0409 41 1 0.4845 -7.4682 1.0031 42 1 1.7021 -8.1858 -0.0811 43 1 3.6028 -8.0948 0.7538 44 1 3.6036 -7.8724 -1.0122 45 1 7.2945 -7.5000 2.5046 46 1 7.8538 -6.5299 1.1117 47 1 8.8681 -9.6260 1.3056 48 1 8.5361 -11.4533 -0.3125 49 1 6.6670 -11.3582 -1.9119 50 1 5.1270 -9.4357 -1.8953 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326760638.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:04 Heat of formation + Delta-G solvation = -41.994959 kcal Electronic energy + Delta-G solvation = -30696.614671 eV Core-core repulsion = 26688.684243 eV Total energy + Delta-G solvation = -4007.930429 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.05401 -41.29725 -38.68746 -38.12495 -36.96296 -34.50446 -33.79486 -33.35433 -32.25675 -31.42476 -30.85553 -27.91846 -27.05608 -25.74029 -25.26266 -24.89112 -22.93406 -22.55161 -22.16670 -21.50313 -20.08833 -19.31550 -18.42343 -17.68208 -17.38630 -17.29057 -16.85019 -16.60027 -16.38737 -15.99825 -15.71214 -15.53269 -15.30747 -15.16735 -15.04968 -14.79998 -14.54051 -14.41552 -14.15509 -13.93126 -13.75579 -13.62976 -13.28135 -13.11704 -12.99518 -12.75148 -12.72204 -12.59638 -12.22644 -12.19504 -11.98941 -11.90643 -11.81179 -11.68553 -11.54761 -11.28877 -11.06480 -11.01649 -10.21635 -9.84826 -9.63315 -9.56564 -9.10138 -8.46467 -5.37628 0.24967 0.38109 1.52534 1.63862 1.65014 1.80119 1.89113 2.67178 2.72315 2.83470 3.15961 3.33925 3.41951 3.61029 3.70442 3.77627 3.84358 3.90896 3.95092 4.04471 4.07251 4.17468 4.20293 4.21533 4.32836 4.36749 4.38197 4.45958 4.53728 4.61883 4.63571 4.72880 4.76027 4.79738 4.86721 4.88772 4.99274 5.04988 5.08293 5.12204 5.17999 5.23003 5.39325 5.41341 5.43493 5.52558 5.53428 5.61722 5.76704 5.99494 6.44026 6.45812 7.04141 7.25422 7.95437 8.08557 9.06185 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012057 B = 0.002861 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.740344 B = 9785.622266 C =11691.918192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.102 4.102 3 Si 1.132 2.868 4 H -0.282 1.282 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.333 4.333 8 H 0.050 0.950 9 N -0.757 5.757 10 C 0.181 3.819 11 C 0.149 3.851 12 H 0.062 0.938 13 C -0.119 4.119 14 C -0.115 4.115 15 C -0.127 4.127 16 C 0.099 3.901 17 N -0.607 5.607 18 C 0.497 3.503 19 O -0.565 6.565 20 C -0.120 4.120 21 C 0.135 3.865 22 H 0.063 0.937 23 O -0.374 6.374 24 C 0.079 3.921 25 C -0.144 4.144 26 C -0.102 4.102 27 C -0.115 4.115 28 C -0.116 4.116 29 C -0.095 4.095 30 C -0.139 4.139 31 H 0.244 0.756 32 H 0.360 0.640 33 H -0.001 1.001 34 H 0.027 0.973 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.140 0.860 45 H 0.109 0.891 46 H 0.074 0.926 47 H 0.143 0.857 48 H 0.155 0.845 49 H 0.157 0.843 50 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.907 -32.374 -2.644 33.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.293 4.293 3 Si 0.956 3.044 4 H -0.209 1.209 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.465 4.465 8 H 0.068 0.932 9 N -0.404 5.404 10 C 0.056 3.944 11 C 0.045 3.955 12 H 0.080 0.920 13 C -0.157 4.157 14 C -0.153 4.153 15 C -0.165 4.165 16 C -0.021 4.021 17 N -0.342 5.342 18 C 0.287 3.713 19 O -0.443 6.443 20 C -0.159 4.159 21 C 0.077 3.923 22 H 0.081 0.919 23 O -0.294 6.294 24 C 0.003 3.997 25 C -0.145 4.145 26 C -0.119 4.119 27 C -0.132 4.132 28 C -0.133 4.133 29 C -0.113 4.113 30 C -0.140 4.140 31 H 0.054 0.946 32 H 0.194 0.806 33 H 0.017 0.983 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.129 0.871 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.158 0.842 45 H 0.127 0.873 46 H 0.092 0.908 47 H 0.160 0.840 48 H 0.173 0.827 49 H 0.175 0.825 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.220 -30.103 -2.415 31.882 hybrid contribution -0.028 -0.861 0.071 0.864 sum 10.193 -30.964 -2.344 32.682 Atomic orbital electron populations 1.70962 1.06760 1.27737 1.56359 1.27292 0.97246 1.04413 1.00344 0.82577 0.73338 0.71410 0.77053 1.20883 1.20564 1.20882 1.20320 0.91851 0.87395 1.46885 0.93175 1.42767 1.04756 1.02152 1.90751 1.21013 0.91951 0.83778 0.97699 1.21168 0.92674 0.83116 0.98526 0.92041 1.21815 0.97249 0.99664 0.96996 1.21539 0.97491 0.93228 1.03015 1.21920 0.97823 0.98498 0.98214 1.22153 0.95231 0.84684 1.00072 1.48279 1.05252 1.07343 1.73306 1.21341 0.82258 0.91938 0.75771 1.90837 1.67882 1.35765 1.49769 1.21878 0.92295 0.94599 1.07135 1.20999 0.93515 0.92168 0.85659 0.91902 1.89244 1.31038 1.75610 1.33471 1.21932 0.84980 0.91753 1.01027 1.21161 0.97533 0.97015 0.98749 1.20713 0.98931 0.92276 1.00027 1.21558 0.98365 0.98758 0.94552 1.21548 0.94280 0.98236 0.99263 1.20750 1.00656 0.92269 0.97604 1.20943 0.97998 0.96262 0.98761 0.94620 0.80641 0.98335 0.95558 0.92980 0.93112 0.91226 0.90402 0.87087 0.91513 0.90222 0.86433 0.86171 0.84197 0.87326 0.90836 0.83960 0.82710 0.82521 0.83564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.28 13.70 21.65 0.30 -63.99 16 2 C -0.10 -6.47 5.50 84.86 0.47 -6.00 16 3 Si 1.13 56.82 29.92 68.60 2.05 58.87 16 4 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 5 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 7 C -0.33 -21.50 9.99 84.03 0.84 -20.66 16 8 H 0.05 3.31 7.83 -2.91 -0.02 3.29 16 9 N -0.76 -44.28 5.38 -343.44 -1.85 -46.13 16 10 C 0.18 9.27 4.14 86.38 0.36 9.63 16 11 C 0.15 5.64 3.10 44.97 0.14 5.78 16 12 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 13 C -0.12 -3.94 5.09 30.67 0.16 -3.79 16 14 C -0.12 -2.50 5.88 30.62 0.18 -2.32 16 15 C -0.13 -1.90 6.08 30.67 0.19 -1.71 16 16 C 0.10 1.67 6.34 86.35 0.55 2.22 16 17 N -0.61 -17.75 2.98 -794.94 -2.37 -20.12 16 18 C 0.50 16.32 7.44 87.66 0.65 16.97 16 19 O -0.56 -25.50 11.09 7.17 0.08 -25.42 16 20 C -0.12 -2.56 3.71 29.84 0.11 -2.45 16 21 C 0.13 3.49 2.84 29.97 0.09 3.58 16 22 H 0.06 1.94 7.95 -2.39 -0.02 1.92 16 23 O -0.37 -11.73 10.83 -138.79 -1.50 -13.23 16 24 C 0.08 1.82 7.63 71.36 0.54 2.36 16 25 C -0.14 -2.83 6.32 -19.72 -0.12 -2.95 16 26 C -0.10 -1.43 10.04 22.22 0.22 -1.20 16 27 C -0.11 -1.20 10.05 22.29 0.22 -0.98 16 28 C -0.12 -1.18 10.05 22.29 0.22 -0.96 16 29 C -0.09 -1.29 9.80 22.22 0.22 -1.07 16 30 C -0.14 -2.75 5.72 -19.72 -0.11 -2.86 16 31 H 0.24 16.03 6.77 -92.71 -0.63 15.40 16 32 H 0.36 20.82 5.17 -92.71 -0.48 20.34 16 33 H 0.00 -0.07 7.22 -2.38 -0.02 -0.09 16 34 H 0.03 1.53 6.25 -2.39 -0.01 1.51 16 35 H 0.05 2.00 6.87 -2.39 -0.02 1.98 16 36 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.12 1.17 5.94 -2.38 -0.01 1.15 16 43 H 0.12 2.09 7.73 -2.39 -0.02 2.07 16 44 H 0.14 1.90 7.64 -2.38 -0.02 1.88 16 45 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 48 H 0.16 0.73 8.06 -2.91 -0.02 0.70 16 49 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 50 H 0.15 1.27 7.89 -2.91 -0.02 1.25 16 Total: -1.00 -89.80 389.70 2.23 -87.57 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.60 Total: 28.88 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 4.92 Total: -6.43 kcal Atomic # 7 Polarization: -126.32 SS G_CDS: -3.92 Total: -130.24 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -1.42 Total: -38.65 kcal Atomic # 14 Polarization: 56.82 SS G_CDS: 2.05 Total: 58.87 kcal Total: -89.80 2.23 -87.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326760638.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.572 kcal (2) G-P(sol) polarization free energy of solvation -89.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds