Wall clock time and date at job start Wed Apr 1 2020 03:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99887 * 2 1 4 4 H 1.48495 * 109.47139 * 270.00213 * 3 2 1 5 5 H 1.48503 * 109.47145 * 30.00525 * 3 2 1 6 6 H 1.48499 * 109.46992 * 150.00298 * 3 2 1 7 7 C 1.37873 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00334 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99970 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47177 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47039 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47342 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00274 * 179.97438 * 12 11 10 14 14 O 1.21346 * 119.99565 * 359.72205 * 13 12 11 15 15 C 1.49451 * 120.00055 * 179.72808 * 13 12 11 16 16 O 1.21357 * 119.99647 * 354.24199 * 15 13 12 17 17 N 1.34773 * 120.00200 * 174.25047 * 15 13 12 18 18 C 1.46500 * 119.99587 * 5.31164 * 17 15 13 19 19 C 1.52996 * 109.46826 * 83.06434 * 18 17 15 20 20 C 1.50703 * 109.47247 * 179.97438 * 19 18 17 21 21 C 1.38238 * 119.99776 * 269.72907 * 20 19 18 22 22 C 1.38241 * 119.99974 * 179.76318 * 21 20 19 23 23 C 1.38233 * 119.99554 * 0.50790 * 22 21 20 24 24 C 1.38236 * 120.00557 * 359.74154 * 23 22 21 25 25 C 1.38228 * 120.00284 * 89.99568 * 20 19 18 26 26 C 1.46499 * 120.00198 * 185.32290 * 17 15 13 27 27 C 1.52999 * 117.49984 * 16.49888 * 26 17 15 28 28 C 1.52992 * 60.00142 * 252.51786 * 27 26 17 29 29 H 0.97001 * 119.99529 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47057 * 59.99646 * 9 7 2 31 31 H 1.09004 * 109.46734 * 300.00240 * 9 7 2 32 32 H 1.08999 * 109.46815 * 59.99616 * 10 9 7 33 33 H 1.08998 * 109.46972 * 299.99483 * 10 9 7 34 34 H 1.09004 * 109.47507 * 59.99706 * 11 10 9 35 35 H 1.09004 * 109.46912 * 300.00124 * 11 10 9 36 36 H 0.96999 * 119.99810 * 359.72711 * 12 11 10 37 37 H 1.09004 * 109.46955 * 203.06006 * 18 17 15 38 38 H 1.08995 * 109.47416 * 323.06454 * 18 17 15 39 39 H 1.08996 * 109.47288 * 299.99544 * 19 18 17 40 40 H 1.09000 * 109.47537 * 59.99637 * 19 18 17 41 41 H 1.07995 * 120.00356 * 359.97438 * 21 20 19 42 42 H 1.07994 * 120.00135 * 180.22583 * 22 21 20 43 43 H 1.08000 * 119.99853 * 179.72720 * 23 22 21 44 44 H 1.07999 * 120.00264 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.00267 * 0.02562 * 25 20 19 46 46 H 1.08995 * 115.54883 * 162.21766 * 26 17 15 47 47 H 1.09004 * 117.49730 * 0.02562 * 27 26 17 48 48 H 1.09000 * 117.49606 * 145.02267 * 27 26 17 49 49 H 1.09003 * 117.49791 * 252.51420 * 28 27 26 50 50 H 1.09003 * 117.52091 * 107.48540 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6621 -0.0015 11 6 1.4804 -4.9871 -0.0020 12 7 2.4323 -6.1006 -0.0024 13 6 1.9831 -7.3713 -0.0024 14 8 0.7901 -7.5930 0.0031 15 6 2.9543 -8.5072 -0.0089 16 8 4.1428 -8.2887 -0.1196 17 7 2.5101 -9.7743 0.1080 18 6 1.0708 -10.0473 0.1244 19 6 0.5468 -10.1068 -1.3118 20 6 -0.9337 -10.3882 -1.2950 21 6 -1.3895 -11.6929 -1.3258 22 6 -2.7474 -11.9513 -1.3055 23 6 -3.6495 -10.9047 -1.2651 24 6 -3.1938 -9.5998 -1.2396 25 6 -1.8358 -9.3417 -1.2546 26 6 3.4664 -10.8785 0.2190 27 6 4.9107 -10.5283 0.5828 28 6 4.5660 -10.9698 -0.8409 29 1 -0.4849 0.8401 0.0004 30 1 0.6248 -2.5563 -0.8919 31 1 0.6241 -2.5574 0.8880 32 1 2.8714 -3.6046 0.8890 33 1 2.8726 -3.6039 -0.8910 34 1 0.8540 -5.0447 -0.8922 35 1 0.8533 -5.0449 0.8877 36 1 3.3860 -5.9233 -0.0063 37 1 0.8877 -11.0018 0.6179 38 1 0.5566 -9.2536 0.6662 39 1 0.7299 -9.1523 -1.8052 40 1 1.0610 -10.9005 -1.8537 41 1 -0.6848 -12.5105 -1.3621 42 1 -3.1035 -12.9706 -1.3258 43 1 -4.7105 -11.1063 -1.2537 44 1 -3.8986 -8.7821 -1.2085 45 1 -1.4798 -8.3223 -1.2354 46 1 3.0620 -11.8135 0.6065 47 1 5.1492 -9.4764 0.7400 48 1 5.4567 -11.2330 1.2100 49 1 4.8852 -11.9650 -1.1505 50 1 4.5776 -10.2085 -1.6210 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332563333.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:31 Heat of formation + Delta-G solvation = -11.969552 kcal Electronic energy + Delta-G solvation = -29480.738698 eV Core-core repulsion = 25474.110268 eV Total energy + Delta-G solvation = -4006.628429 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.20798 -39.36702 -39.01818 -36.97000 -35.84925 -34.96101 -33.35220 -32.58807 -31.27248 -30.98449 -28.47933 -27.29785 -25.37782 -23.93738 -23.23939 -22.66744 -22.59867 -21.63663 -21.10970 -20.78062 -19.47039 -17.76471 -16.93279 -16.77964 -16.43786 -16.18737 -16.07736 -15.65259 -15.27554 -15.17479 -14.86601 -14.50302 -14.35218 -14.06415 -13.72193 -13.56850 -13.51721 -13.38206 -13.29589 -12.82316 -12.41257 -12.32834 -11.92264 -11.89078 -11.87729 -11.49426 -11.36141 -11.15846 -11.01926 -10.93084 -10.85774 -10.77047 -10.61204 -10.51052 -9.92516 -9.63355 -9.27143 -9.14665 -9.04851 -9.02709 -8.93112 -8.56235 -8.39791 -6.04660 -4.07667 1.19080 1.29838 1.36326 2.18244 3.09805 3.29802 3.32064 3.36378 3.39594 3.65242 3.71463 4.29776 4.42909 4.54431 4.61346 4.70756 4.72417 4.79287 4.87902 4.90543 5.03293 5.13295 5.25121 5.30705 5.31456 5.40396 5.49430 5.49970 5.55867 5.65573 5.66196 5.76700 5.84560 5.95738 5.98258 6.04582 6.05229 6.30364 6.33614 6.40092 6.43747 6.51041 6.56347 6.68675 6.83303 6.90696 6.92615 7.28697 7.59281 7.68466 7.70767 7.93596 8.02900 8.34842 8.98823 9.56876 11.06599 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009318 B = 0.002430 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.211279 B =11521.752092 C =14332.948643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.123 4.123 11 C 0.115 3.885 12 N -0.690 5.690 13 C 0.498 3.502 14 O -0.516 6.516 15 C 0.507 3.493 16 O -0.515 6.515 17 N -0.557 5.557 18 C 0.102 3.898 19 C -0.087 4.087 20 C -0.077 4.077 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.126 4.126 24 C -0.120 4.120 25 C -0.101 4.101 26 C 0.064 3.936 27 C -0.190 4.190 28 C -0.184 4.184 29 H 0.261 0.739 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.410 0.590 37 H 0.075 0.925 38 H 0.123 0.877 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.122 0.878 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.136 0.864 48 H 0.092 0.908 49 H 0.097 0.903 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.436 -28.222 -0.923 28.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.007 4.007 12 N -0.342 5.342 13 C 0.279 3.721 14 O -0.393 6.393 15 C 0.290 3.710 16 O -0.391 6.391 17 N -0.288 5.288 18 C -0.019 4.019 19 C -0.126 4.126 20 C -0.077 4.077 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.144 4.144 24 C -0.138 4.138 25 C -0.119 4.119 26 C -0.040 4.040 27 C -0.228 4.228 28 C -0.223 4.223 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.246 0.754 37 H 0.093 0.907 38 H 0.141 0.859 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.140 0.860 45 H 0.149 0.851 46 H 0.150 0.850 47 H 0.154 0.846 48 H 0.110 0.890 49 H 0.115 0.885 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.039 -28.113 -0.960 28.129 hybrid contribution 0.759 0.896 -0.094 1.178 sum 0.798 -27.217 -1.054 27.249 Atomic orbital electron populations 1.69965 1.06054 1.26726 1.50564 1.25024 0.94865 0.99323 0.95221 0.86578 0.79825 0.83376 0.78131 1.20634 1.21195 1.19865 1.21197 0.93050 0.90888 1.50969 0.92586 1.19026 0.93774 0.90785 0.97675 1.21926 0.99885 0.93001 1.01282 1.21832 0.91698 0.84692 1.02475 1.46091 1.12202 1.04951 1.70908 1.20013 0.88607 0.84472 0.79034 1.90643 1.16122 1.83719 1.48845 1.20438 0.88620 0.84075 0.77824 1.90609 1.16320 1.84407 1.47811 1.47230 1.07583 1.04478 1.69506 1.22266 0.77972 1.04064 0.97627 1.20888 0.91533 1.02873 0.97259 1.19700 0.94962 0.93161 0.99903 1.21028 0.95608 0.96035 1.01125 1.21081 0.93319 0.98901 1.00980 1.21149 0.99494 0.92985 1.00748 1.21232 0.95865 0.96782 0.99903 1.21275 0.92789 0.99709 0.98138 1.21855 0.85633 0.90903 1.05602 1.23825 0.95361 1.05804 0.97769 1.23254 1.02632 1.02776 0.93613 0.92910 0.96229 0.96217 0.92468 0.92465 0.91125 0.91069 0.75399 0.90693 0.85924 0.90410 0.91361 0.86423 0.86401 0.86390 0.86016 0.85097 0.84988 0.84598 0.88974 0.88477 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 11 C 0.11 1.87 5.67 -4.04 -0.02 1.85 16 12 N -0.69 -9.76 5.55 -60.73 -0.34 -10.09 16 13 C 0.50 6.91 7.68 -11.58 -0.09 6.82 16 14 O -0.52 -7.56 11.81 5.50 0.06 -7.49 16 15 C 0.51 6.46 7.47 -11.59 -0.09 6.38 16 16 O -0.51 -7.17 12.24 5.49 0.07 -7.10 16 17 N -0.56 -5.85 2.86 -166.62 -0.48 -6.33 16 18 C 0.10 0.99 5.02 -4.04 -0.02 0.97 16 19 C -0.09 -0.86 5.20 -27.88 -0.14 -1.01 16 20 C -0.08 -0.79 5.13 -104.62 -0.54 -1.32 16 21 C -0.12 -1.07 9.70 -39.58 -0.38 -1.46 16 22 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 23 C -0.13 -1.14 10.05 -39.58 -0.40 -1.54 16 24 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 25 C -0.10 -1.14 9.70 -39.58 -0.38 -1.53 16 26 C 0.06 0.56 6.62 -67.93 -0.45 0.11 16 27 C -0.19 -1.79 9.63 -26.74 -0.26 -2.05 16 28 C -0.18 -1.64 9.87 -26.74 -0.26 -1.90 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.41 5.38 7.96 -40.82 -0.32 5.06 16 37 H 0.07 0.58 7.94 -51.93 -0.41 0.17 16 38 H 0.12 1.43 5.31 -51.96 -0.28 1.16 16 39 H 0.08 0.91 7.10 -51.93 -0.37 0.55 16 40 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 43 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.13 1.61 7.92 -52.49 -0.42 1.20 16 46 H 0.13 0.83 8.03 -51.93 -0.42 0.41 16 47 H 0.14 1.63 5.21 -52.16 -0.27 1.36 16 48 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.10 1.07 7.60 -51.93 -0.39 0.67 16 LS Contribution 411.80 15.07 6.21 6.21 Total: -1.00 -30.47 411.80 -11.20 -41.67 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -7.92 Total: 5.49 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -4.52 Total: -12.96 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: -0.08 Total: -42.16 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.13 Total: -14.59 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -30.47 -11.20 -41.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332563333.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.703 kcal (2) G-P(sol) polarization free energy of solvation -30.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds