Wall clock time and date at job start Wed Apr 1 2020 03:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99887 * 2 1 4 4 H 1.48495 * 109.47139 * 270.00213 * 3 2 1 5 5 H 1.48503 * 109.47145 * 30.00525 * 3 2 1 6 6 H 1.48499 * 109.46992 * 150.00298 * 3 2 1 7 7 C 1.37873 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00334 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99970 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47177 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47039 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47342 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00274 * 179.97438 * 12 11 10 14 14 O 1.21346 * 119.99565 * 359.72205 * 13 12 11 15 15 C 1.49451 * 120.00055 * 179.72808 * 13 12 11 16 16 O 1.21357 * 119.99647 * 354.24199 * 15 13 12 17 17 N 1.34773 * 120.00200 * 174.25047 * 15 13 12 18 18 C 1.46500 * 119.99587 * 5.31164 * 17 15 13 19 19 C 1.52996 * 109.46826 * 83.06434 * 18 17 15 20 20 C 1.50703 * 109.47247 * 179.97438 * 19 18 17 21 21 C 1.38238 * 119.99776 * 269.72907 * 20 19 18 22 22 C 1.38241 * 119.99974 * 179.76318 * 21 20 19 23 23 C 1.38233 * 119.99554 * 0.50790 * 22 21 20 24 24 C 1.38236 * 120.00557 * 359.74154 * 23 22 21 25 25 C 1.38228 * 120.00284 * 89.99568 * 20 19 18 26 26 C 1.46499 * 120.00198 * 185.32290 * 17 15 13 27 27 C 1.52999 * 117.49984 * 16.49888 * 26 17 15 28 28 C 1.52992 * 60.00142 * 252.51786 * 27 26 17 29 29 H 0.97001 * 119.99529 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47057 * 59.99646 * 9 7 2 31 31 H 1.09004 * 109.46734 * 300.00240 * 9 7 2 32 32 H 1.08999 * 109.46815 * 59.99616 * 10 9 7 33 33 H 1.08998 * 109.46972 * 299.99483 * 10 9 7 34 34 H 1.09004 * 109.47507 * 59.99706 * 11 10 9 35 35 H 1.09004 * 109.46912 * 300.00124 * 11 10 9 36 36 H 0.96999 * 119.99810 * 359.72711 * 12 11 10 37 37 H 1.09004 * 109.46955 * 203.06006 * 18 17 15 38 38 H 1.08995 * 109.47416 * 323.06454 * 18 17 15 39 39 H 1.08996 * 109.47288 * 299.99544 * 19 18 17 40 40 H 1.09000 * 109.47537 * 59.99637 * 19 18 17 41 41 H 1.07995 * 120.00356 * 359.97438 * 21 20 19 42 42 H 1.07994 * 120.00135 * 180.22583 * 22 21 20 43 43 H 1.08000 * 119.99853 * 179.72720 * 23 22 21 44 44 H 1.07999 * 120.00264 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.00267 * 0.02562 * 25 20 19 46 46 H 1.08995 * 115.54883 * 162.21766 * 26 17 15 47 47 H 1.09004 * 117.49730 * 0.02562 * 27 26 17 48 48 H 1.09000 * 117.49606 * 145.02267 * 27 26 17 49 49 H 1.09003 * 117.49791 * 252.51420 * 28 27 26 50 50 H 1.09003 * 117.52091 * 107.48540 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6621 -0.0015 11 6 1.4804 -4.9871 -0.0020 12 7 2.4323 -6.1006 -0.0024 13 6 1.9831 -7.3713 -0.0024 14 8 0.7901 -7.5930 0.0031 15 6 2.9543 -8.5072 -0.0089 16 8 4.1428 -8.2887 -0.1196 17 7 2.5101 -9.7743 0.1080 18 6 1.0708 -10.0473 0.1244 19 6 0.5468 -10.1068 -1.3118 20 6 -0.9337 -10.3882 -1.2950 21 6 -1.3895 -11.6929 -1.3258 22 6 -2.7474 -11.9513 -1.3055 23 6 -3.6495 -10.9047 -1.2651 24 6 -3.1938 -9.5998 -1.2396 25 6 -1.8358 -9.3417 -1.2546 26 6 3.4664 -10.8785 0.2190 27 6 4.9107 -10.5283 0.5828 28 6 4.5660 -10.9698 -0.8409 29 1 -0.4849 0.8401 0.0004 30 1 0.6248 -2.5563 -0.8919 31 1 0.6241 -2.5574 0.8880 32 1 2.8714 -3.6046 0.8890 33 1 2.8726 -3.6039 -0.8910 34 1 0.8540 -5.0447 -0.8922 35 1 0.8533 -5.0449 0.8877 36 1 3.3860 -5.9233 -0.0063 37 1 0.8877 -11.0018 0.6179 38 1 0.5566 -9.2536 0.6662 39 1 0.7299 -9.1523 -1.8052 40 1 1.0610 -10.9005 -1.8537 41 1 -0.6848 -12.5105 -1.3621 42 1 -3.1035 -12.9706 -1.3258 43 1 -4.7105 -11.1063 -1.2537 44 1 -3.8986 -8.7821 -1.2085 45 1 -1.4798 -8.3223 -1.2354 46 1 3.0620 -11.8135 0.6065 47 1 5.1492 -9.4764 0.7400 48 1 5.4567 -11.2330 1.2100 49 1 4.8852 -11.9650 -1.1505 50 1 4.5776 -10.2085 -1.6210 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332563333.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:30 Heat of formation + Delta-G solvation = -27.860534 kcal Electronic energy + Delta-G solvation = -29481.427782 eV Core-core repulsion = 25474.110268 eV Total energy + Delta-G solvation = -4007.317514 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.19662 -40.12844 -40.06574 -37.91354 -37.10521 -35.94254 -35.15706 -33.38377 -33.04396 -31.70571 -29.32702 -28.91633 -26.65784 -24.99858 -24.51817 -23.40827 -23.30673 -22.71191 -22.37746 -21.85324 -20.62644 -18.77946 -18.52510 -17.72387 -17.61462 -17.19876 -17.09065 -16.75118 -16.42909 -16.26319 -16.03897 -15.87569 -15.38030 -15.13334 -14.82723 -14.44860 -14.28697 -14.25609 -14.22998 -14.07687 -13.78199 -13.57414 -13.52791 -13.17536 -12.78522 -12.75943 -12.57299 -12.41568 -12.31992 -12.08709 -11.88364 -11.80576 -11.73260 -11.62668 -11.52481 -11.24836 -11.22449 -10.55965 -10.30196 -10.25120 -9.78150 -9.75063 -9.37888 -8.20696 -6.31589 0.26571 0.49310 0.55971 1.20837 1.41099 1.41856 1.52963 2.03677 2.31853 2.42013 2.90983 2.98850 3.13245 3.23658 3.80184 3.90601 3.95982 4.04663 4.07764 4.09316 4.17118 4.21758 4.22861 4.34911 4.35619 4.50877 4.51393 4.59939 4.68084 4.71183 4.84767 4.87030 4.90456 4.93784 5.01944 5.10641 5.13508 5.20641 5.24271 5.31543 5.35590 5.50401 5.60630 5.63253 5.69316 5.69380 5.80013 5.83175 5.89734 6.16602 6.19739 6.23573 6.66302 6.85303 6.92298 7.37845 8.91215 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009318 B = 0.002430 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.211279 B =11521.752092 C =14332.948643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.026 3.974 10 C -0.106 4.106 11 C 0.131 3.869 12 N -0.688 5.688 13 C 0.495 3.505 14 O -0.525 6.525 15 C 0.506 3.494 16 O -0.529 6.529 17 N -0.549 5.549 18 C 0.105 3.895 19 C -0.078 4.078 20 C -0.085 4.085 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.131 4.131 24 C -0.136 4.136 25 C -0.125 4.125 26 C 0.063 3.937 27 C -0.198 4.198 28 C -0.181 4.181 29 H 0.264 0.736 30 H -0.005 1.005 31 H -0.004 1.004 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.416 0.584 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.050 0.950 40 H 0.084 0.916 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.138 0.862 44 H 0.124 0.876 45 H 0.107 0.893 46 H 0.169 0.831 47 H 0.107 0.893 48 H 0.115 0.885 49 H 0.124 0.876 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.449 -31.022 -0.724 31.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.144 4.144 11 C 0.008 3.992 12 N -0.341 5.341 13 C 0.276 3.724 14 O -0.403 6.403 15 C 0.289 3.711 16 O -0.407 6.407 17 N -0.279 5.279 18 C -0.016 4.016 19 C -0.116 4.116 20 C -0.086 4.086 21 C -0.137 4.137 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.154 4.154 25 C -0.144 4.144 26 C -0.040 4.040 27 C -0.235 4.235 28 C -0.219 4.219 29 H 0.072 0.928 30 H 0.014 0.986 31 H 0.015 0.985 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.253 0.747 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.068 0.932 40 H 0.103 0.897 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.156 0.844 44 H 0.142 0.858 45 H 0.125 0.875 46 H 0.186 0.814 47 H 0.125 0.875 48 H 0.133 0.867 49 H 0.142 0.858 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.065 -30.947 -0.761 30.974 hybrid contribution 0.385 1.695 -0.163 1.746 sum 1.450 -29.252 -0.924 29.302 Atomic orbital electron populations 1.70099 1.07792 1.27791 1.51646 1.25976 0.95754 1.03383 0.94787 0.85454 0.78692 0.78499 0.78451 1.19854 1.20882 1.18660 1.21673 0.93675 0.92158 1.50518 0.91856 1.18919 0.94300 0.92560 0.95366 1.21633 0.98627 0.92083 1.02042 1.21416 0.91483 0.84422 1.01838 1.45892 1.12078 1.04666 1.71442 1.20368 0.88853 0.84682 0.78466 1.90670 1.16732 1.83968 1.48890 1.20161 0.87971 0.84571 0.78427 1.90631 1.16541 1.84708 1.48861 1.47311 1.08399 1.04133 1.68073 1.22234 0.77153 1.04689 0.97513 1.20776 0.91719 1.01946 0.97193 1.19769 0.94770 0.93686 1.00385 1.21319 0.96454 0.95840 1.00044 1.21466 0.93122 1.00075 0.99564 1.21444 1.00890 0.92456 1.00050 1.21381 0.95522 0.97927 1.00538 1.21227 0.93826 0.99140 1.00171 1.22272 0.85102 0.91087 1.05495 1.23761 0.96307 1.04750 0.98730 1.23257 1.02620 1.03340 0.92679 0.92770 0.98612 0.98528 0.91586 0.91685 0.91922 0.91725 0.74664 0.87660 0.88179 0.93162 0.89729 0.83785 0.83611 0.84368 0.85788 0.87514 0.81387 0.87471 0.86679 0.85799 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.54 -30.32 9.11 25.60 0.23 -30.09 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.35 4.97 29.85 0.15 1.50 16 10 C -0.11 -4.09 5.27 30.59 0.16 -3.93 16 11 C 0.13 4.45 5.67 86.38 0.49 4.94 16 12 N -0.69 -19.98 5.55 -464.41 -2.58 -22.55 16 13 C 0.50 14.16 7.68 87.27 0.67 14.83 16 14 O -0.52 -16.15 11.81 -3.23 -0.04 -16.19 16 15 C 0.51 12.93 7.47 87.27 0.65 13.58 16 16 O -0.53 -14.87 12.24 -3.27 -0.04 -14.91 16 17 N -0.55 -10.86 2.86 -799.41 -2.28 -13.15 16 18 C 0.11 1.91 5.02 86.38 0.43 2.34 16 19 C -0.08 -1.49 5.20 29.85 0.16 -1.33 16 20 C -0.09 -1.70 5.13 -19.87 -0.10 -1.80 16 21 C -0.12 -1.82 9.70 22.27 0.22 -1.60 16 22 C -0.12 -1.80 10.05 22.27 0.22 -1.58 16 23 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 24 C -0.14 -2.84 10.05 22.27 0.22 -2.62 16 25 C -0.13 -2.98 9.70 22.27 0.22 -2.77 16 26 C 0.06 0.93 6.62 44.99 0.30 1.23 16 27 C -0.20 -3.36 9.63 30.59 0.29 -3.07 16 28 C -0.18 -2.82 9.87 30.59 0.30 -2.52 16 29 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 30 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.42 11.05 7.96 -92.71 -0.74 10.31 16 37 H 0.11 1.30 7.94 -2.38 -0.02 1.28 16 38 H 0.10 2.35 5.31 -2.78 -0.01 2.34 16 39 H 0.05 1.23 7.10 -2.39 -0.02 1.21 16 40 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 41 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 43 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 44 H 0.12 2.37 8.06 -2.91 -0.02 2.35 16 45 H 0.11 2.96 7.92 -2.91 -0.02 2.93 16 46 H 0.17 1.30 8.03 -2.39 -0.02 1.28 16 47 H 0.11 2.54 5.21 -6.09 -0.03 2.51 16 48 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.07 1.53 7.60 -2.39 -0.02 1.52 16 Total: -1.00 -68.11 411.80 2.85 -65.25 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.18 Total: 26.29 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 5.30 Total: -14.44 kcal Atomic # 7 Polarization: -87.46 SS G_CDS: -4.57 Total: -92.03 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.08 Total: -31.09 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -68.11 2.85 -65.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332563333.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.393 kcal (2) G-P(sol) polarization free energy of solvation -68.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds