Wall clock time and date at job start Wed Apr 1 2020 02:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99954 * 2 1 4 4 H 1.48495 * 109.47062 * 269.99669 * 3 2 1 5 5 H 1.48496 * 109.47247 * 29.99733 * 3 2 1 6 6 H 1.48504 * 109.46997 * 150.00020 * 3 2 1 7 7 C 1.37880 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99608 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99986 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46932 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46587 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.46737 * 180.02562 * 11 10 9 13 13 O 1.21277 * 120.00026 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00283 * 179.97438 * 12 11 10 15 15 C 1.46493 * 120.00235 * 185.03328 * 14 12 11 16 16 H 1.09004 * 108.81360 * 32.24745 * 15 14 12 17 17 C 1.52211 * 108.91034 * 273.64911 * 15 14 12 18 18 C 1.52041 * 110.77937 * 206.17011 * 17 15 14 19 19 C 1.54488 * 110.31819 * 180.22311 * 18 17 15 20 20 C 1.55013 * 101.61986 * 153.66147 * 19 18 17 21 21 N 1.47910 * 104.86798 * 323.63743 * 20 19 18 22 22 C 1.47606 * 108.53575 * 24.00759 * 21 20 19 23 23 O 1.42179 * 110.45377 * 57.96983 * 18 17 15 24 24 C 1.36171 * 116.16918 * 305.37527 * 23 18 17 25 25 C 1.38890 * 118.94730 * 205.53205 * 24 23 18 26 26 C 1.38061 * 120.09000 * 179.69268 * 25 24 23 27 27 C 1.38287 * 119.76583 * 359.97438 * 26 25 24 28 28 C 1.38007 * 120.16247 * 0.06849 * 27 26 25 29 29 C 1.38372 * 120.76768 * 25.32379 * 24 23 18 30 30 H 0.97003 * 120.00113 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.46704 * 60.00098 * 9 7 2 32 32 H 1.08995 * 109.47146 * 300.00312 * 9 7 2 33 33 H 1.08994 * 109.46941 * 60.00182 * 10 9 7 34 34 H 1.09001 * 109.47274 * 299.99714 * 10 9 7 35 35 H 1.08994 * 109.47631 * 60.00237 * 11 10 9 36 36 H 1.09000 * 109.47192 * 299.99309 * 11 10 9 37 37 H 0.97003 * 119.99662 * 5.02827 * 14 12 11 38 38 H 1.09003 * 109.21611 * 85.84130 * 17 15 14 39 39 H 1.08990 * 109.22038 * 326.50667 * 17 15 14 40 40 H 1.08997 * 110.99711 * 271.74218 * 19 18 17 41 41 H 1.08996 * 110.99492 * 35.57497 * 19 18 17 42 42 H 1.08999 * 110.36093 * 204.78700 * 20 19 18 43 43 H 1.08999 * 110.36596 * 82.48254 * 20 19 18 44 44 H 1.00901 * 110.99639 * 261.75672 * 21 20 19 45 45 H 1.09004 * 109.91378 * 239.09468 * 22 21 20 46 46 H 1.08998 * 110.07288 * 117.91138 * 22 21 20 47 47 H 1.07995 * 119.95483 * 359.66937 * 25 24 23 48 48 H 1.08005 * 120.11971 * 179.97438 * 26 25 24 49 49 H 1.07997 * 119.92101 * 180.02562 * 27 26 25 50 50 H 1.08001 * 119.76389 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6367 0.0014 11 6 5.5515 -2.6366 0.0014 12 6 6.0538 -4.0574 0.0022 13 8 5.2656 -4.9792 0.0031 14 7 7.3788 -4.3038 0.0018 15 6 7.8679 -5.6802 -0.1087 16 1 7.1715 -6.2526 -0.7215 17 6 7.9238 -6.2971 1.2816 18 6 8.9669 -7.4017 1.3402 19 6 9.0107 -8.0238 2.7536 20 6 9.5343 -9.4510 2.4505 21 7 8.9122 -9.8173 1.1596 22 6 8.5700 -8.5777 0.4350 23 8 10.2467 -6.8960 0.9830 24 6 10.3273 -6.2600 -0.2184 25 6 11.5498 -6.2179 -0.8761 26 6 11.6568 -5.5849 -2.0984 27 6 10.5426 -4.9936 -2.6652 28 6 9.3278 -5.0345 -2.0116 29 6 9.2111 -5.6671 -0.7817 30 1 -0.4850 0.8401 -0.0004 31 1 3.8751 -0.6797 0.8895 32 1 3.8745 -0.6809 -0.8904 33 1 3.6578 -3.1514 -0.8879 34 1 3.6585 -3.1495 0.8921 35 1 5.9148 -2.1220 0.8909 36 1 5.9148 -2.1237 -0.8891 37 1 8.0086 -3.5697 0.0747 38 1 6.9470 -6.7127 1.5292 39 1 8.1784 -5.5245 2.0070 40 1 9.7036 -7.4822 3.3974 41 1 8.0151 -8.0588 3.1959 42 1 9.2220 -10.1435 3.2321 43 1 10.6205 -9.4452 2.3598 44 1 8.0941 -10.3904 1.3023 45 1 7.4988 -8.5477 0.2357 46 1 9.1234 -8.5276 -0.5027 47 1 12.4180 -6.6806 -0.4307 48 1 12.6074 -5.5515 -2.6101 49 1 10.6234 -4.4981 -3.6214 50 1 8.4617 -4.5710 -2.4603 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341572544.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:32 Heat of formation + Delta-G solvation = -78.540869 kcal Electronic energy + Delta-G solvation = -30218.792280 eV Core-core repulsion = 26209.277102 eV Total energy + Delta-G solvation = -4009.515178 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.51896 -40.69844 -39.56307 -37.41754 -36.84581 -36.05258 -34.17903 -33.14770 -31.94300 -31.27677 -30.23214 -30.14548 -27.85022 -25.86776 -24.82281 -23.63276 -23.27821 -22.56236 -22.04590 -21.31513 -20.24824 -19.04844 -18.82629 -18.17028 -17.82494 -17.27169 -17.01988 -16.76468 -16.45174 -16.23219 -16.06029 -15.65656 -15.18730 -15.04881 -14.87265 -14.78043 -14.57794 -14.52284 -14.08719 -14.06221 -13.82208 -13.50518 -13.32510 -13.25576 -13.16358 -12.72300 -12.66869 -12.51277 -12.45202 -12.27415 -12.16059 -11.80070 -11.74361 -11.67972 -11.53942 -11.50173 -11.33299 -10.88824 -10.75385 -10.30584 -9.81501 -9.62216 -9.21344 -8.28123 -6.33646 0.19262 0.39017 1.38086 1.41402 1.53419 1.59940 2.06846 2.20495 2.38535 2.79686 3.05293 3.07039 3.25332 3.35183 3.59977 3.63313 3.76882 3.89735 3.94582 4.09184 4.15336 4.16680 4.22318 4.24774 4.26122 4.39535 4.47151 4.52178 4.54303 4.66508 4.72120 4.76214 4.81367 4.84258 4.90829 4.93766 4.95983 5.00460 5.03965 5.10606 5.27555 5.34098 5.46805 5.55091 5.56362 5.59814 5.67791 5.69072 5.80529 6.30286 6.34385 6.38595 6.48909 6.75205 7.20747 7.30760 8.89501 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014828 B = 0.002322 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.836255 B =12053.088753 C =13342.057855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.003 4.003 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.236 1.236 7 C -0.539 4.539 8 H 0.020 0.980 9 C -0.010 4.010 10 C -0.080 4.080 11 C -0.131 4.131 12 C 0.518 3.482 13 O -0.579 6.579 14 N -0.712 5.712 15 C 0.200 3.800 16 H 0.076 0.924 17 C -0.145 4.145 18 C 0.103 3.897 19 C -0.137 4.137 20 C 0.051 3.949 21 N -0.689 5.689 22 C 0.033 3.967 23 O -0.304 6.304 24 C 0.126 3.874 25 C -0.156 4.156 26 C -0.075 4.075 27 C -0.150 4.150 28 C -0.080 4.080 29 C -0.179 4.179 30 H 0.266 0.734 31 H 0.030 0.970 32 H 0.029 0.971 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.415 0.585 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.350 0.650 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.141 0.859 48 H 0.158 0.842 49 H 0.147 0.853 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.623 -14.768 0.798 34.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.199 4.199 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.159 1.159 7 C -0.577 4.577 8 H 0.038 0.962 9 C -0.047 4.047 10 C -0.118 4.118 11 C -0.171 4.171 12 C 0.306 3.694 13 O -0.459 6.459 14 N -0.364 5.364 15 C 0.095 3.905 16 H 0.094 0.906 17 C -0.184 4.184 18 C 0.064 3.936 19 C -0.175 4.175 20 C -0.077 4.077 21 N -0.318 5.318 22 C -0.096 4.096 23 O -0.219 6.219 24 C 0.081 3.919 25 C -0.175 4.175 26 C -0.093 4.093 27 C -0.168 4.168 28 C -0.099 4.099 29 C -0.180 4.180 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.252 0.748 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.094 0.906 44 H 0.167 0.833 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.159 0.841 48 H 0.176 0.824 49 H 0.165 0.835 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 31.663 -15.504 0.579 35.260 hybrid contribution -1.495 1.168 0.380 1.935 sum 30.168 -14.336 0.959 33.415 Atomic orbital electron populations 1.70107 1.08672 1.28267 1.52722 1.26194 0.95737 1.04099 0.93907 0.85506 0.79666 0.77138 0.79382 1.18912 1.21263 1.15894 1.21558 0.92715 0.92825 1.50633 0.96185 1.19548 0.93462 0.94400 0.97277 1.21033 0.93326 0.97077 1.00349 1.21732 0.96364 0.92439 1.06521 1.21174 0.81990 0.92159 0.74049 1.90685 1.56504 1.47869 1.50792 1.46068 1.06637 1.08650 1.75059 1.19076 0.92118 0.83932 0.95382 0.90617 1.22122 0.99775 0.98890 0.97641 1.22405 0.81648 0.92537 0.97039 1.23149 1.03839 0.97348 0.93199 1.22963 1.00248 0.94320 0.90208 1.61665 1.33145 1.16744 1.20263 1.23058 1.00347 0.88597 0.97641 1.86138 1.32237 1.70145 1.33391 1.18884 0.94133 0.93351 0.85539 1.20887 0.96316 1.04222 0.96054 1.21385 0.99909 0.94385 0.93658 1.21339 0.92218 1.01752 1.01530 1.21134 0.98809 0.96919 0.93019 1.19733 0.94124 1.05761 0.98381 0.92516 0.95205 0.95288 0.94418 0.94452 0.86612 0.86403 0.74780 0.90176 0.89953 0.88609 0.88380 0.88781 0.90600 0.83324 0.91534 0.91436 0.84136 0.82430 0.83543 0.85609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.72 13.96 21.45 0.30 -61.42 16 2 C 0.00 -0.21 5.47 84.66 0.46 0.26 16 3 Si 0.96 43.79 27.47 68.60 1.88 45.68 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.24 -9.57 6.54 99.48 0.65 -8.92 16 7 C -0.54 -32.29 9.66 25.60 0.25 -32.04 16 8 H 0.02 1.35 7.99 -2.91 -0.02 1.32 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 10 C -0.08 -3.25 4.44 30.59 0.14 -3.12 16 11 C -0.13 -3.63 5.70 29.85 0.17 -3.46 16 12 C 0.52 14.81 7.79 87.66 0.68 15.49 16 13 O -0.58 -22.02 15.63 -3.02 -0.05 -22.06 16 14 N -0.71 -14.85 4.58 -448.06 -2.05 -16.90 16 15 C 0.20 4.26 2.17 43.84 0.10 4.35 16 16 H 0.08 1.96 7.53 -2.38 -0.02 1.94 16 17 C -0.15 -2.91 4.40 30.02 0.13 -2.77 16 18 C 0.10 1.85 0.79 -10.40 -0.01 1.84 16 19 C -0.14 -1.87 6.21 31.79 0.20 -1.67 16 20 C 0.05 0.66 7.58 86.80 0.66 1.32 16 21 N -0.69 -10.88 7.40 -504.98 -3.74 -14.61 16 22 C 0.03 0.61 6.25 86.37 0.54 1.15 16 23 O -0.30 -6.10 9.86 -95.50 -0.94 -7.04 16 24 C 0.13 2.42 5.52 22.46 0.12 2.54 16 25 C -0.16 -2.45 9.95 22.38 0.22 -2.23 16 26 C -0.08 -0.92 10.06 22.24 0.22 -0.70 16 27 C -0.15 -2.00 10.03 22.23 0.22 -1.78 16 28 C -0.08 -1.35 9.31 22.35 0.21 -1.14 16 29 C -0.18 -3.41 5.15 -19.84 -0.10 -3.51 16 30 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 31 H 0.03 1.30 7.20 -2.38 -0.02 1.28 16 32 H 0.03 1.24 7.57 -2.39 -0.02 1.23 16 33 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 34 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 35 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.42 6.48 8.61 -92.71 -0.80 5.68 16 38 H 0.08 1.78 8.08 -2.39 -0.02 1.77 16 39 H 0.08 1.63 8.04 -2.39 -0.02 1.62 16 40 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.10 1.19 8.02 -2.39 -0.02 1.17 16 42 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.35 4.42 8.91 -89.69 -0.80 3.62 16 45 H 0.07 1.24 7.76 -2.38 -0.02 1.22 16 46 H 0.07 1.45 7.29 -2.39 -0.02 1.43 16 47 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 48 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 49 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 50 H 0.13 2.08 8.03 -2.91 -0.02 2.06 16 Total: -1.00 -77.91 398.59 -0.97 -78.88 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -0.70 Total: 23.26 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 4.33 Total: -25.78 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -5.49 Total: -92.93 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.99 Total: -29.10 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.68 kcal Total: -77.91 -0.97 -78.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341572544.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.335 kcal (2) G-P(sol) polarization free energy of solvation -77.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds