Wall clock time and date at job start Wed Apr 1 2020 02:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00344 * 2 1 4 4 H 1.48497 * 109.47056 * 240.00472 * 3 2 1 5 5 H 1.48497 * 109.46819 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46865 * 120.00404 * 3 2 1 7 7 C 1.37884 * 119.99507 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99539 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00453 * 0.27297 * 7 2 1 10 10 C 1.52991 * 109.47290 * 179.72495 * 9 7 2 11 11 C 1.52997 * 109.47284 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47327 * 180.02562 * 11 10 9 13 13 O 1.21279 * 119.99981 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99946 * 180.02562 * 12 11 10 15 15 C 1.46494 * 120.00168 * 174.96489 * 14 12 11 16 16 H 1.09005 * 108.88708 * 327.71498 * 15 14 12 17 17 C 1.52176 * 108.91460 * 86.34872 * 15 14 12 18 18 C 1.52266 * 110.73907 * 154.10519 * 17 15 14 19 19 C 1.53772 * 110.39513 * 63.50829 * 18 17 15 20 20 C 1.54499 * 104.88988 * 118.93702 * 19 18 17 21 21 N 1.48598 * 104.60970 * 23.82753 * 20 19 18 22 22 C 1.48674 * 104.30157 * 320.81579 * 21 20 19 23 23 O 1.42457 * 109.95960 * 301.52115 * 18 17 15 24 24 C 1.36137 * 116.08115 * 55.32680 * 23 18 17 25 25 C 1.38891 * 118.98120 * 154.03557 * 24 23 18 26 26 C 1.38055 * 120.09378 * 180.17755 * 25 24 23 27 27 C 1.38287 * 119.76668 * 359.97438 * 26 25 24 28 28 C 1.38011 * 120.16290 * 359.92889 * 27 26 25 29 29 C 1.38383 * 120.75017 * 334.05563 * 24 23 18 30 30 H 0.96995 * 119.99999 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46836 * 299.72418 * 9 7 2 32 32 H 1.09004 * 109.47057 * 59.72290 * 9 7 2 33 33 H 1.09000 * 109.47118 * 299.99750 * 10 9 7 34 34 H 1.09004 * 109.47238 * 59.99905 * 10 9 7 35 35 H 1.09003 * 109.47219 * 300.00101 * 11 10 9 36 36 H 1.08997 * 109.47510 * 59.99881 * 11 10 9 37 37 H 0.96999 * 120.00224 * 354.95570 * 14 12 11 38 38 H 1.09001 * 109.22995 * 274.43146 * 17 15 14 39 39 H 1.09002 * 109.22506 * 33.82605 * 17 15 14 40 40 H 1.09004 * 110.35425 * 237.78421 * 19 18 17 41 41 H 1.08999 * 110.35728 * 0.08314 * 19 18 17 42 42 H 1.09004 * 110.40797 * 142.60926 * 20 19 18 43 43 H 1.09003 * 110.41122 * 265.04149 * 20 19 18 44 44 H 1.00899 * 111.00118 * 80.42362 * 21 20 19 45 45 H 1.08995 * 110.42550 * 280.23520 * 22 21 20 46 46 H 1.08994 * 110.43069 * 157.74409 * 22 21 20 47 47 H 1.07996 * 119.95118 * 0.15452 * 25 24 23 48 48 H 1.08004 * 120.11899 * 180.02562 * 26 25 24 49 49 H 1.07996 * 119.92295 * 179.91088 * 27 26 25 50 50 H 1.08003 * 119.76521 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0073 10 6 2.2451 -3.6621 -0.0134 11 6 1.4801 -4.9871 -0.0210 12 6 2.4594 -6.1326 -0.0264 13 8 3.6518 -5.9110 -0.0248 14 7 2.0101 -7.4032 -0.0339 15 6 2.9574 -8.5145 -0.1505 16 1 3.8018 -8.1957 -0.7617 17 6 3.4634 -8.8791 1.2376 18 6 3.9050 -10.3355 1.2852 19 6 5.0956 -10.5656 0.3397 20 6 6.2451 -11.0397 1.2568 21 7 5.5634 -11.6096 2.4479 22 6 4.4201 -10.6909 2.6914 23 8 2.8183 -11.1851 0.9292 24 6 2.2301 -10.9328 -0.2723 25 6 1.5817 -11.9672 -0.9346 26 6 0.9806 -11.7379 -2.1560 27 6 1.0259 -10.4747 -2.7171 28 6 1.6683 -9.4460 -2.0585 29 6 2.2747 -9.6671 -0.8300 30 1 -0.4850 0.8400 0.0004 31 1 0.6243 -2.5616 0.8824 32 1 0.6242 -2.5523 -0.8976 33 1 2.8717 -3.5997 -0.9032 34 1 2.8718 -3.6090 0.8768 35 1 0.8531 -5.0497 0.8685 36 1 0.8537 -5.0400 -0.9114 37 1 1.0594 -7.5820 0.0379 38 1 4.3087 -8.2393 1.4911 39 1 2.6650 -8.7229 1.9631 40 1 4.8541 -11.3349 -0.3938 41 1 5.3681 -9.6361 -0.1601 42 1 6.8395 -11.8045 0.7568 43 1 6.8734 -10.1970 1.5453 44 1 5.2408 -12.5480 2.2654 45 1 4.7569 -9.7939 3.2111 46 1 3.6426 -11.1949 3.2653 47 1 1.5482 -12.9525 -0.4936 48 1 0.4759 -12.5419 -2.6712 49 1 0.5577 -10.2928 -3.6732 50 1 1.7001 -8.4621 -2.5028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341572545.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:35 Heat of formation + Delta-G solvation = -80.842010 kcal Electronic energy + Delta-G solvation = -30180.433353 eV Core-core repulsion = 26170.818390 eV Total energy + Delta-G solvation = -4009.614963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.53685 -40.69795 -39.59841 -37.47344 -36.83508 -36.04718 -34.09859 -33.07800 -31.74023 -31.23671 -30.34374 -29.72381 -27.74816 -25.93932 -24.90152 -23.55979 -23.16423 -22.96914 -22.22570 -21.29580 -20.13161 -18.99561 -18.65597 -18.07823 -17.67451 -17.19175 -17.10359 -16.65944 -16.50924 -16.26650 -16.19951 -15.64296 -15.20521 -15.09434 -14.93593 -14.75976 -14.72320 -14.25895 -14.07222 -13.98438 -13.75837 -13.57653 -13.13385 -13.09911 -12.93573 -12.72932 -12.62291 -12.52182 -12.44713 -12.43624 -12.21279 -12.13431 -11.72527 -11.56817 -11.51840 -11.47568 -11.28983 -10.85573 -10.54946 -10.34953 -9.88883 -9.76716 -9.26279 -8.20921 -6.30983 0.17645 0.36961 1.38966 1.41784 1.49892 1.58314 2.05371 2.19679 2.41161 2.78043 3.06344 3.12044 3.31027 3.38195 3.63007 3.69286 3.74209 3.89747 4.03447 4.06713 4.09099 4.19755 4.21798 4.25549 4.30566 4.35676 4.46007 4.52472 4.54217 4.67947 4.76053 4.78991 4.80818 4.88427 4.90266 4.95322 4.99009 5.03328 5.09249 5.17714 5.26460 5.33898 5.46071 5.51888 5.53256 5.53584 5.74420 5.78228 5.85999 6.26349 6.28650 6.35438 6.46700 6.84390 7.18588 7.37643 8.90439 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014586 B = 0.002244 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.203638 B =12474.344374 C =13852.206769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.051 0.949 9 C 0.026 3.974 10 C -0.081 4.081 11 C -0.130 4.130 12 C 0.521 3.479 13 O -0.576 6.576 14 N -0.713 5.713 15 C 0.200 3.800 16 H 0.076 0.924 17 C -0.146 4.146 18 C 0.092 3.908 19 C -0.174 4.174 20 C 0.045 3.955 21 N -0.667 5.667 22 C 0.058 3.942 23 O -0.309 6.309 24 C 0.127 3.873 25 C -0.156 4.156 26 C -0.076 4.076 27 C -0.151 4.151 28 C -0.083 4.083 29 C -0.177 4.177 30 H 0.265 0.735 31 H 0.000 1.000 32 H 0.000 1.000 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.414 0.586 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.348 0.652 45 H 0.101 0.899 46 H 0.095 0.905 47 H 0.144 0.856 48 H 0.159 0.841 49 H 0.145 0.855 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.720 -31.843 -1.409 32.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.070 0.930 9 C -0.011 4.011 10 C -0.119 4.119 11 C -0.170 4.170 12 C 0.309 3.691 13 O -0.455 6.455 14 N -0.365 5.365 15 C 0.096 3.904 16 H 0.093 0.907 17 C -0.185 4.185 18 C 0.052 3.948 19 C -0.213 4.213 20 C -0.085 4.085 21 N -0.293 5.293 22 C -0.072 4.072 23 O -0.224 6.224 24 C 0.081 3.919 25 C -0.174 4.174 26 C -0.094 4.094 27 C -0.169 4.169 28 C -0.101 4.101 29 C -0.178 4.178 30 H 0.074 0.926 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.250 0.750 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.164 0.836 45 H 0.119 0.881 46 H 0.114 0.886 47 H 0.162 0.838 48 H 0.176 0.824 49 H 0.163 0.837 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.870 -31.473 -0.724 31.856 hybrid contribution -0.733 1.262 -0.873 1.701 sum 4.137 -30.211 -1.598 30.535 Atomic orbital electron populations 1.70056 1.07508 1.27868 1.51507 1.25909 0.95824 1.03069 0.94679 0.85564 0.78404 0.78406 0.79078 1.19403 1.20366 1.19418 1.21669 0.93346 0.92810 1.50835 0.93029 1.19009 0.94194 0.92394 0.95473 1.21148 0.97588 0.92833 1.00335 1.21688 0.97927 0.91656 1.05735 1.21068 0.89483 0.84466 0.74039 1.90665 1.18778 1.85287 1.50772 1.46087 1.11146 1.04259 1.75048 1.19089 0.91501 0.84331 0.95499 0.90650 1.22170 1.02854 0.96045 0.97424 1.22914 0.85363 0.88742 0.97818 1.23444 0.96014 1.02822 0.99061 1.23034 0.95698 1.00711 0.89041 1.63316 1.23438 1.05833 1.36726 1.23024 0.92966 0.98882 0.92315 1.86198 1.46395 1.56434 1.33388 1.18856 0.94991 0.92459 0.85548 1.20902 1.02235 0.98346 0.95910 1.21386 0.96453 0.97695 0.93832 1.21334 1.01073 0.92965 1.01524 1.21125 0.95780 1.00035 0.93180 1.19736 1.06384 0.93443 0.98271 0.92648 0.98149 0.98123 0.94037 0.94031 0.87500 0.87366 0.74955 0.90211 0.90185 0.90578 0.90715 0.88846 0.90023 0.83615 0.88133 0.88632 0.83794 0.82376 0.83708 0.85949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.96 45.22 29.54 68.60 2.03 47.24 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.55 -32.31 9.11 25.60 0.23 -32.08 16 8 H 0.05 3.00 7.74 -2.91 -0.02 2.97 16 9 C 0.03 1.40 4.97 29.84 0.15 1.55 16 10 C -0.08 -3.53 4.44 30.59 0.14 -3.39 16 11 C -0.13 -4.17 5.70 29.85 0.17 -4.00 16 12 C 0.52 16.07 7.79 87.66 0.68 16.75 16 13 O -0.58 -22.47 15.64 -3.03 -0.05 -22.51 16 14 N -0.71 -16.36 4.58 -448.14 -2.05 -18.41 16 15 C 0.20 4.46 1.98 43.82 0.09 4.55 16 16 H 0.08 2.01 7.06 -2.38 -0.02 1.99 16 17 C -0.15 -3.03 4.29 30.08 0.13 -2.91 16 18 C 0.09 1.60 1.03 -10.47 -0.01 1.59 16 19 C -0.17 -2.84 5.55 31.36 0.17 -2.67 16 20 C 0.04 0.62 7.48 86.48 0.65 1.26 16 21 N -0.67 -9.55 7.63 -501.11 -3.82 -13.37 16 22 C 0.06 0.89 6.75 86.27 0.58 1.47 16 23 O -0.31 -5.81 9.77 -95.11 -0.93 -6.74 16 24 C 0.13 2.35 5.65 22.46 0.13 2.47 16 25 C -0.16 -2.30 9.95 22.38 0.22 -2.07 16 26 C -0.08 -0.91 10.06 22.24 0.22 -0.69 16 27 C -0.15 -2.08 10.03 22.23 0.22 -1.86 16 28 C -0.08 -1.47 9.31 22.34 0.21 -1.26 16 29 C -0.18 -3.45 5.12 -19.85 -0.10 -3.55 16 30 H 0.26 15.11 8.31 -92.71 -0.77 14.33 16 31 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 33 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 34 H 0.04 1.89 8.10 -2.38 -0.02 1.87 16 35 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.41 7.57 8.61 -92.71 -0.80 6.77 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.08 1.68 8.04 -2.39 -0.02 1.66 16 40 H 0.08 1.26 7.56 -2.39 -0.02 1.24 16 41 H 0.07 1.39 7.00 -2.39 -0.02 1.37 16 42 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.35 4.20 8.92 -89.70 -0.80 3.40 16 45 H 0.10 1.57 7.85 -2.39 -0.02 1.55 16 46 H 0.10 1.34 8.07 -2.39 -0.02 1.32 16 47 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 48 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 49 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 50 H 0.12 2.22 8.03 -2.91 -0.02 2.19 16 Total: -1.00 -71.79 401.01 -0.85 -72.63 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -0.65 Total: 21.59 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: 4.34 Total: -24.18 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -5.59 Total: -88.03 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.98 Total: -29.25 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -71.79 -0.85 -72.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341572545.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.210 kcal (2) G-P(sol) polarization free energy of solvation -71.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds