Wall clock time and date at job start Wed Apr 1 2020 03:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99689 * 2 1 4 4 H 1.48510 * 109.47082 * 269.99560 * 3 2 1 5 5 H 1.48489 * 109.47333 * 29.99656 * 3 2 1 6 6 H 1.48504 * 109.47159 * 149.99899 * 3 2 1 7 7 C 1.37877 * 120.00384 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99542 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00159 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46878 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.46778 * 179.97438 * 10 9 7 12 12 C 1.34775 * 119.99689 * 179.97438 * 11 10 9 13 13 O 1.21343 * 120.00459 * 0.02562 * 12 11 10 14 14 C 1.49453 * 119.99799 * 180.02562 * 12 11 10 15 15 O 1.21353 * 120.00208 * 0.02562 * 14 12 11 16 16 N 1.34777 * 119.99937 * 179.72511 * 14 12 11 17 17 C 1.46504 * 119.99858 * 180.27545 * 16 14 12 18 18 H 1.09000 * 110.01708 * 325.06498 * 17 16 14 19 19 C 1.54270 * 110.02993 * 86.45923 * 17 16 14 20 20 C 1.54889 * 104.19648 * 142.89419 * 19 17 16 21 21 C 1.54895 * 102.74858 * 322.05720 * 20 19 17 22 22 C 1.53876 * 110.02932 * 203.62409 * 17 16 14 23 23 H 1.08999 * 110.03329 * 121.43287 * 22 17 16 24 24 C 1.52996 * 110.03470 * 0.02562 * 22 17 16 25 25 C 1.50707 * 109.47109 * 175.00505 * 24 22 17 26 26 C 1.38234 * 119.99106 * 269.72631 * 25 24 22 27 27 C 1.38245 * 119.99540 * 179.76494 * 26 25 24 28 28 C 1.38238 * 119.99522 * 0.48714 * 27 26 25 29 29 C 1.38234 * 120.00340 * 359.78591 * 28 27 26 30 30 C 1.38233 * 120.00181 * 89.99914 * 25 24 22 31 31 H 0.96995 * 119.99776 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.46799 * 60.00522 * 9 7 2 33 33 H 1.08994 * 109.46990 * 300.00245 * 9 7 2 34 34 H 1.08998 * 109.46943 * 60.00655 * 10 9 7 35 35 H 1.08994 * 109.47116 * 300.00266 * 10 9 7 36 36 H 0.97000 * 120.00381 * 0.02562 * 11 10 9 37 37 H 0.97000 * 120.00317 * 0.28450 * 16 14 12 38 38 H 1.08998 * 110.48223 * 261.56835 * 19 17 16 39 39 H 1.09004 * 110.48697 * 24.08215 * 19 17 16 40 40 H 1.08998 * 110.76014 * 80.36451 * 20 19 17 41 41 H 1.08998 * 110.75542 * 203.56258 * 20 19 17 42 42 H 1.08990 * 110.48712 * 156.62206 * 21 20 19 43 43 H 1.09006 * 110.48178 * 279.26649 * 21 20 19 44 44 H 1.09003 * 109.46915 * 294.99920 * 24 22 17 45 45 H 1.08990 * 109.47168 * 54.99953 * 24 22 17 46 46 H 1.08000 * 120.00947 * 359.97438 * 26 25 24 47 47 H 1.07991 * 119.99831 * 180.24856 * 27 26 25 48 48 H 1.07999 * 119.99390 * 179.76883 * 28 27 26 49 49 H 1.07995 * 119.99712 * 179.97438 * 29 28 27 50 50 H 1.07997 * 120.00372 * 0.02562 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1939 0.0011 10 6 4.0217 -2.6365 0.0023 11 7 5.4866 -2.6364 0.0022 12 6 6.1605 -3.8036 0.0037 13 8 5.5539 -4.8545 0.0046 14 6 7.6551 -3.8035 0.0042 15 8 8.2618 -2.7526 0.0038 16 7 8.3290 -4.9707 0.0113 17 6 9.7940 -4.9706 0.0179 18 1 10.1697 -4.1330 -0.5698 19 6 10.3158 -4.8760 1.4666 20 6 11.5711 -5.7834 1.4781 21 6 11.1491 -6.9623 0.5663 22 6 10.3237 -6.2970 -0.5545 23 1 10.9572 -6.1037 -1.4201 24 6 9.1546 -7.2004 -0.9519 25 6 9.6844 -8.4419 -1.6223 26 6 9.8601 -8.4654 -2.9932 27 6 10.3507 -9.6025 -3.6077 28 6 10.6559 -10.7193 -2.8523 29 6 10.4748 -10.6976 -1.4820 30 6 9.9892 -9.5588 -0.8670 31 1 -0.4849 0.8400 -0.0004 32 1 3.8746 -0.6800 0.8912 33 1 3.8753 -0.6803 -0.8888 34 1 3.6588 -3.1508 -0.8875 35 1 3.6580 -3.1497 0.8924 36 1 5.9717 -1.7963 0.0019 37 1 7.8440 -5.8108 0.0118 38 1 10.5860 -3.8481 1.7083 39 1 9.5675 -5.2477 2.1666 40 1 12.4303 -5.2596 1.0592 41 1 11.7872 -6.1310 2.4883 42 1 12.0272 -7.4568 0.1512 43 1 10.5362 -7.6730 1.1209 44 1 8.5926 -7.4804 -0.0609 45 1 8.5006 -6.6663 -1.6410 46 1 9.6174 -7.5945 -3.5839 47 1 10.4918 -9.6196 -4.6782 48 1 11.0356 -11.6088 -3.3328 49 1 10.7129 -11.5702 -0.8920 50 1 9.8474 -9.5420 0.2035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346568327.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:38 Heat of formation + Delta-G solvation = -62.716796 kcal Electronic energy + Delta-G solvation = -29185.932266 eV Core-core repulsion = 25177.103271 eV Total energy + Delta-G solvation = -4008.828995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.90946 -39.86828 -38.87001 -37.81613 -35.34694 -33.87003 -33.52045 -32.78832 -31.22532 -30.29414 -29.53747 -28.34287 -25.90595 -25.48901 -23.45932 -22.95514 -21.91448 -21.05696 -20.89690 -20.36183 -19.61826 -18.37117 -17.20408 -16.98276 -16.62729 -16.00639 -15.85861 -15.82092 -15.48501 -15.33854 -14.89035 -14.57868 -14.18508 -14.13908 -13.97535 -13.72055 -13.61908 -13.37967 -13.15000 -13.04692 -12.62092 -12.58791 -12.25702 -11.98074 -11.59673 -11.49662 -11.46210 -11.38476 -11.29585 -11.25177 -11.05811 -10.99467 -10.90241 -10.44933 -10.30710 -9.96470 -9.46560 -9.36648 -9.30223 -9.24344 -8.99694 -8.77815 -8.61740 -6.12835 -4.13549 1.02253 1.07526 1.54596 2.47959 3.26140 3.34192 3.35447 3.36068 3.44037 3.78096 4.03326 4.18229 4.37284 4.39447 4.53848 4.56285 4.66661 4.67743 4.80131 4.88262 4.97317 5.04716 5.10230 5.11812 5.20232 5.20920 5.22918 5.29571 5.43035 5.48002 5.57942 5.68760 5.70130 5.74222 5.80250 5.86086 5.96378 5.97357 6.09818 6.13780 6.19323 6.19981 6.30284 6.46605 6.50892 6.67883 6.95255 7.10132 7.17950 7.56668 7.62109 7.86281 8.21005 8.41315 8.90429 9.47106 10.99875 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.001963 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.954243 B =14258.680526 C =15362.158260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.127 3.873 11 N -0.691 5.691 12 C 0.497 3.503 13 O -0.530 6.530 14 C 0.507 3.493 15 O -0.521 6.521 16 N -0.702 5.702 17 C 0.143 3.857 18 H 0.096 0.904 19 C -0.136 4.136 20 C -0.124 4.124 21 C -0.117 4.117 22 C -0.091 4.091 23 H 0.086 0.914 24 C -0.086 4.086 25 C -0.074 4.074 26 C -0.117 4.117 27 C -0.118 4.118 28 C -0.127 4.127 29 C -0.119 4.119 30 C -0.115 4.115 31 H 0.265 0.735 32 H 0.025 0.975 33 H 0.020 0.980 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.409 0.591 37 H 0.413 0.587 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.077 -19.191 -1.775 34.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.562 4.562 8 H 0.095 0.905 9 C -0.062 4.062 10 C 0.005 3.995 11 N -0.342 5.342 12 C 0.277 3.723 13 O -0.407 6.407 14 C 0.288 3.712 15 O -0.396 6.396 16 N -0.358 5.358 17 C 0.038 3.962 18 H 0.114 0.886 19 C -0.175 4.175 20 C -0.162 4.162 21 C -0.154 4.154 22 C -0.110 4.110 23 H 0.104 0.896 24 C -0.123 4.123 25 C -0.074 4.074 26 C -0.135 4.135 27 C -0.136 4.136 28 C -0.145 4.145 29 C -0.137 4.137 30 C -0.133 4.133 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.244 0.756 37 H 0.253 0.747 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 27.866 -19.048 -1.780 33.801 hybrid contribution 0.284 0.909 -0.077 0.955 sum 28.149 -18.139 -1.857 33.539 Atomic orbital electron populations 1.69899 1.06276 1.27118 1.50227 1.24989 0.94778 0.99175 0.94272 0.86767 0.80335 0.83491 0.78618 1.20154 1.21224 1.18962 1.20874 0.88432 0.94948 1.51974 0.90537 1.19826 0.98112 0.90989 0.97232 1.21712 0.74755 1.00827 1.02160 1.46209 1.09507 1.08047 1.70416 1.20007 0.87786 0.85236 0.79303 1.90743 1.69711 1.31003 1.49253 1.20468 0.88976 0.84489 0.77243 1.90745 1.70021 1.31115 1.47729 1.46173 1.07118 1.09125 1.73425 1.21777 0.78731 0.98469 0.97205 0.88611 1.22815 0.97701 1.00831 0.96115 1.22465 0.97476 0.96237 0.99993 1.22466 0.99537 0.97549 0.95886 1.22030 0.96629 0.93267 0.99030 0.89585 1.20762 0.97387 0.93391 1.00804 1.19791 0.98787 0.95177 0.93652 1.21093 0.99740 0.98413 0.94228 1.21156 0.99174 0.93420 0.99877 1.21148 1.00687 0.98416 0.94225 1.21147 0.99586 0.98112 0.94891 1.21075 0.99559 0.92892 0.99744 0.92504 0.95724 0.96150 0.91273 0.91246 0.75579 0.74679 0.90767 0.90859 0.91218 0.91169 0.91262 0.91135 0.90345 0.89985 0.86078 0.86172 0.86310 0.86204 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.96 55.43 0.77 -26.36 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 7 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 8 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 9 C -0.02 -0.54 4.16 -27.88 -0.12 -0.66 16 10 C 0.13 2.54 5.61 -4.04 -0.02 2.51 16 11 N -0.69 -11.82 5.55 -60.73 -0.34 -12.15 16 12 C 0.50 8.12 7.89 -11.58 -0.09 8.03 16 13 O -0.53 -9.62 16.48 5.50 0.09 -9.53 16 14 C 0.51 7.10 7.88 -11.58 -0.09 7.01 16 15 O -0.52 -8.20 16.15 5.49 0.09 -8.11 16 16 N -0.70 -7.48 4.42 -53.14 -0.23 -7.71 16 17 C 0.14 1.24 3.21 -66.81 -0.21 1.03 16 18 H 0.10 0.94 7.61 -51.93 -0.39 0.54 16 19 C -0.14 -1.11 6.53 -25.07 -0.16 -1.27 16 20 C -0.12 -0.76 6.91 -24.74 -0.17 -0.93 16 21 C -0.12 -0.68 5.42 -25.07 -0.14 -0.82 16 22 C -0.09 -0.61 2.92 -89.50 -0.26 -0.87 16 23 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 24 C -0.09 -0.62 3.36 -27.88 -0.09 -0.71 16 25 C -0.07 -0.56 4.90 -104.62 -0.51 -1.08 16 26 C -0.12 -0.91 9.70 -39.58 -0.38 -1.29 16 27 C -0.12 -0.86 10.05 -39.58 -0.40 -1.25 16 28 C -0.13 -0.87 10.05 -39.58 -0.40 -1.27 16 29 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 30 C -0.11 -0.82 8.91 -39.58 -0.35 -1.17 16 31 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 33 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 34 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 36 H 0.41 6.50 7.94 -40.82 -0.32 6.17 16 37 H 0.41 4.10 5.31 -40.82 -0.22 3.88 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.40 6.91 -51.93 -0.36 0.04 16 44 H 0.08 0.54 7.06 -51.93 -0.37 0.17 16 45 H 0.08 0.66 7.34 -51.93 -0.38 0.27 16 46 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 47 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 48 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 49 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 50 H 0.12 0.70 7.36 -52.49 -0.39 0.32 16 LS Contribution 405.31 15.07 6.11 6.11 Total: -1.00 -31.97 405.31 -10.26 -42.24 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -7.85 Total: 5.97 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -4.23 Total: -6.91 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.20 Total: -46.23 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.18 Total: -17.63 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.97 -10.26 -42.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346568327.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.480 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds