Wall clock time and date at job start Wed Apr 1 2020 03:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99689 * 2 1 4 4 H 1.48510 * 109.47082 * 269.99560 * 3 2 1 5 5 H 1.48489 * 109.47333 * 29.99656 * 3 2 1 6 6 H 1.48504 * 109.47159 * 149.99899 * 3 2 1 7 7 C 1.37877 * 120.00384 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99542 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00159 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46878 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.46778 * 179.97438 * 10 9 7 12 12 C 1.34775 * 119.99689 * 179.97438 * 11 10 9 13 13 O 1.21343 * 120.00459 * 0.02562 * 12 11 10 14 14 C 1.49453 * 119.99799 * 180.02562 * 12 11 10 15 15 O 1.21353 * 120.00208 * 0.02562 * 14 12 11 16 16 N 1.34777 * 119.99937 * 179.72511 * 14 12 11 17 17 C 1.46504 * 119.99858 * 180.27545 * 16 14 12 18 18 H 1.09000 * 110.01708 * 325.06498 * 17 16 14 19 19 C 1.54270 * 110.02993 * 86.45923 * 17 16 14 20 20 C 1.54889 * 104.19648 * 142.89419 * 19 17 16 21 21 C 1.54895 * 102.74858 * 322.05720 * 20 19 17 22 22 C 1.53876 * 110.02932 * 203.62409 * 17 16 14 23 23 H 1.08999 * 110.03329 * 121.43287 * 22 17 16 24 24 C 1.52996 * 110.03470 * 0.02562 * 22 17 16 25 25 C 1.50707 * 109.47109 * 175.00505 * 24 22 17 26 26 C 1.38234 * 119.99106 * 269.72631 * 25 24 22 27 27 C 1.38245 * 119.99540 * 179.76494 * 26 25 24 28 28 C 1.38238 * 119.99522 * 0.48714 * 27 26 25 29 29 C 1.38234 * 120.00340 * 359.78591 * 28 27 26 30 30 C 1.38233 * 120.00181 * 89.99914 * 25 24 22 31 31 H 0.96995 * 119.99776 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.46799 * 60.00522 * 9 7 2 33 33 H 1.08994 * 109.46990 * 300.00245 * 9 7 2 34 34 H 1.08998 * 109.46943 * 60.00655 * 10 9 7 35 35 H 1.08994 * 109.47116 * 300.00266 * 10 9 7 36 36 H 0.97000 * 120.00381 * 0.02562 * 11 10 9 37 37 H 0.97000 * 120.00317 * 0.28450 * 16 14 12 38 38 H 1.08998 * 110.48223 * 261.56835 * 19 17 16 39 39 H 1.09004 * 110.48697 * 24.08215 * 19 17 16 40 40 H 1.08998 * 110.76014 * 80.36451 * 20 19 17 41 41 H 1.08998 * 110.75542 * 203.56258 * 20 19 17 42 42 H 1.08990 * 110.48712 * 156.62206 * 21 20 19 43 43 H 1.09006 * 110.48178 * 279.26649 * 21 20 19 44 44 H 1.09003 * 109.46915 * 294.99920 * 24 22 17 45 45 H 1.08990 * 109.47168 * 54.99953 * 24 22 17 46 46 H 1.08000 * 120.00947 * 359.97438 * 26 25 24 47 47 H 1.07991 * 119.99831 * 180.24856 * 27 26 25 48 48 H 1.07999 * 119.99390 * 179.76883 * 28 27 26 49 49 H 1.07995 * 119.99712 * 179.97438 * 29 28 27 50 50 H 1.07997 * 120.00372 * 0.02562 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1939 0.0011 10 6 4.0217 -2.6365 0.0023 11 7 5.4866 -2.6364 0.0022 12 6 6.1605 -3.8036 0.0037 13 8 5.5539 -4.8545 0.0046 14 6 7.6551 -3.8035 0.0042 15 8 8.2618 -2.7526 0.0038 16 7 8.3290 -4.9707 0.0113 17 6 9.7940 -4.9706 0.0179 18 1 10.1697 -4.1330 -0.5698 19 6 10.3158 -4.8760 1.4666 20 6 11.5711 -5.7834 1.4781 21 6 11.1491 -6.9623 0.5663 22 6 10.3237 -6.2970 -0.5545 23 1 10.9572 -6.1037 -1.4201 24 6 9.1546 -7.2004 -0.9519 25 6 9.6844 -8.4419 -1.6223 26 6 9.8601 -8.4654 -2.9932 27 6 10.3507 -9.6025 -3.6077 28 6 10.6559 -10.7193 -2.8523 29 6 10.4748 -10.6976 -1.4820 30 6 9.9892 -9.5588 -0.8670 31 1 -0.4849 0.8400 -0.0004 32 1 3.8746 -0.6800 0.8912 33 1 3.8753 -0.6803 -0.8888 34 1 3.6588 -3.1508 -0.8875 35 1 3.6580 -3.1497 0.8924 36 1 5.9717 -1.7963 0.0019 37 1 7.8440 -5.8108 0.0118 38 1 10.5860 -3.8481 1.7083 39 1 9.5675 -5.2477 2.1666 40 1 12.4303 -5.2596 1.0592 41 1 11.7872 -6.1310 2.4883 42 1 12.0272 -7.4568 0.1512 43 1 10.5362 -7.6730 1.1209 44 1 8.5926 -7.4804 -0.0609 45 1 8.5006 -6.6663 -1.6410 46 1 9.6174 -7.5945 -3.5839 47 1 10.4918 -9.6196 -4.6782 48 1 11.0356 -11.6088 -3.3328 49 1 10.7129 -11.5702 -0.8920 50 1 9.8474 -9.5420 0.2035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346568327.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:37 Heat of formation + Delta-G solvation = -81.757498 kcal Electronic energy + Delta-G solvation = -29186.757933 eV Core-core repulsion = 25177.103271 eV Total energy + Delta-G solvation = -4009.654662 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.93494 -40.68413 -39.77247 -38.77053 -36.89825 -35.04845 -34.57284 -34.07147 -32.13036 -31.73204 -30.10195 -29.14422 -27.40822 -26.21631 -24.85197 -23.47078 -22.70857 -22.47250 -21.71816 -21.43419 -20.36086 -19.55449 -19.02622 -18.01866 -17.45925 -17.10681 -16.85892 -16.70853 -16.23878 -16.17513 -16.02803 -15.88398 -15.72825 -15.27590 -14.90128 -14.62187 -14.55426 -14.42717 -14.14263 -13.98374 -13.64894 -13.40402 -13.21040 -13.08008 -12.92376 -12.83535 -12.54317 -12.23400 -12.20249 -12.00803 -11.92667 -11.86851 -11.79082 -11.60402 -11.52044 -11.49855 -11.48050 -10.79667 -10.71048 -10.30961 -10.22068 -9.76735 -9.53266 -8.30807 -6.37581 0.31415 0.49530 0.55157 1.31446 1.39028 1.40609 1.51801 2.11234 2.35684 2.64013 2.91679 3.04287 3.34912 3.47970 3.60596 3.82343 4.00744 4.02919 4.20065 4.25519 4.30758 4.34440 4.37924 4.39750 4.46006 4.47631 4.54998 4.65397 4.70235 4.71394 4.77815 4.86537 4.92480 4.97988 5.03333 5.09733 5.18939 5.21365 5.22942 5.28134 5.28919 5.36142 5.38684 5.47284 5.58115 5.63141 5.68450 5.76521 5.92154 6.17683 6.19914 6.34457 6.67466 6.73881 6.92391 7.26951 8.85378 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.001963 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.954243 B =14258.680526 C =15362.158260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.007 3.993 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.241 1.241 7 C -0.536 4.536 8 H 0.036 0.964 9 C -0.017 4.017 10 C 0.142 3.858 11 N -0.688 5.688 12 C 0.498 3.502 13 O -0.549 6.549 14 C 0.514 3.486 15 O -0.538 6.538 16 N -0.685 5.685 17 C 0.140 3.860 18 H 0.087 0.913 19 C -0.135 4.135 20 C -0.117 4.117 21 C -0.111 4.111 22 C -0.081 4.081 23 H 0.089 0.911 24 C -0.083 4.083 25 C -0.082 4.082 26 C -0.133 4.133 27 C -0.129 4.129 28 C -0.135 4.135 29 C -0.127 4.127 30 C -0.122 4.122 31 H 0.268 0.732 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.417 0.583 37 H 0.418 0.582 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.123 0.877 47 H 0.132 0.868 48 H 0.135 0.865 49 H 0.137 0.863 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.053 -19.418 -1.545 36.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.190 4.190 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.165 1.165 7 C -0.574 4.574 8 H 0.054 0.946 9 C -0.055 4.055 10 C 0.019 3.981 11 N -0.340 5.340 12 C 0.279 3.721 13 O -0.428 6.428 14 C 0.294 3.706 15 O -0.416 6.416 16 N -0.340 5.340 17 C 0.036 3.964 18 H 0.105 0.895 19 C -0.174 4.174 20 C -0.155 4.155 21 C -0.149 4.149 22 C -0.100 4.100 23 H 0.108 0.892 24 C -0.121 4.121 25 C -0.082 4.082 26 C -0.151 4.151 27 C -0.147 4.147 28 C -0.153 4.153 29 C -0.145 4.145 30 C -0.140 4.140 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.254 0.746 37 H 0.259 0.741 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.141 0.859 47 H 0.150 0.850 48 H 0.153 0.847 49 H 0.155 0.845 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 30.888 -19.316 -1.549 36.463 hybrid contribution -0.672 0.827 -0.168 1.079 sum 30.215 -18.488 -1.717 35.465 Atomic orbital electron populations 1.70056 1.08362 1.28374 1.51885 1.25996 0.95653 1.03585 0.93804 0.85626 0.79624 0.77900 0.79301 1.19086 1.21120 1.16461 1.21195 0.91170 0.93569 1.51480 0.94572 1.19695 0.94789 0.92893 0.98139 1.21278 0.76584 0.98945 1.01299 1.45984 1.08219 1.08944 1.70829 1.20417 0.88965 0.84490 0.78221 1.90734 1.70486 1.31638 1.49908 1.19960 0.87609 0.85184 0.77806 1.90745 1.69794 1.31799 1.49216 1.46192 1.08078 1.08251 1.71477 1.21972 0.77098 0.99398 0.97916 0.89480 1.22788 0.98595 1.00814 0.95210 1.22444 0.96529 0.95775 1.00729 1.22440 0.99634 0.97438 0.95353 1.21966 0.96525 0.92048 0.99463 0.89227 1.20710 0.97343 0.93377 1.00621 1.19843 0.99187 0.95462 0.93716 1.21259 1.00360 0.98901 0.94593 1.21392 0.99114 0.93454 1.00732 1.21434 1.00444 0.98918 0.94504 1.21436 0.99181 0.98659 0.95179 1.21275 0.99444 0.92816 1.00446 0.92310 0.94628 0.94757 0.92259 0.92243 0.74582 0.74102 0.91740 0.91320 0.90626 0.90176 0.90556 0.90615 0.90040 0.91081 0.85929 0.84983 0.84667 0.84481 0.84876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.63 13.96 21.45 0.30 -58.33 16 2 C 0.01 0.41 5.47 84.65 0.46 0.87 16 3 Si 0.95 42.85 27.47 68.60 1.88 44.73 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.24 -9.87 6.54 99.48 0.65 -9.22 16 7 C -0.54 -30.21 9.66 25.60 0.25 -29.97 16 8 H 0.04 2.26 7.99 -2.91 -0.02 2.23 16 9 C -0.02 -0.77 4.16 29.85 0.12 -0.65 16 10 C 0.14 5.64 5.61 86.38 0.48 6.13 16 11 N -0.69 -22.87 5.55 -464.42 -2.58 -25.45 16 12 C 0.50 15.93 7.89 87.27 0.69 16.61 16 13 O -0.55 -19.75 16.48 -3.22 -0.05 -19.81 16 14 C 0.51 13.90 7.88 87.27 0.69 14.59 16 15 O -0.54 -16.32 16.15 -3.26 -0.05 -16.38 16 16 N -0.68 -13.88 4.42 -440.41 -1.95 -15.82 16 17 C 0.14 2.25 3.21 45.72 0.15 2.40 16 18 H 0.09 1.62 7.61 -2.39 -0.02 1.60 16 19 C -0.14 -2.00 6.53 31.67 0.21 -1.79 16 20 C -0.12 -1.16 6.91 31.89 0.22 -0.94 16 21 C -0.11 -1.04 5.42 31.67 0.17 -0.87 16 22 C -0.08 -0.96 2.92 -10.07 -0.03 -0.99 16 23 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 24 C -0.08 -1.09 3.36 29.85 0.10 -0.99 16 25 C -0.08 -1.15 4.90 -19.86 -0.10 -1.25 16 26 C -0.13 -1.97 9.70 22.27 0.22 -1.75 16 27 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 28 C -0.14 -1.65 10.05 22.27 0.22 -1.43 16 29 C -0.13 -1.51 10.05 22.27 0.22 -1.28 16 30 C -0.12 -1.54 8.91 22.27 0.20 -1.34 16 31 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 32 H 0.04 1.52 7.20 -2.39 -0.02 1.50 16 33 H 0.03 1.45 7.57 -2.39 -0.02 1.43 16 34 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.42 12.57 7.94 -92.71 -0.74 11.83 16 37 H 0.42 7.87 5.31 -92.71 -0.49 7.37 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.09 8.05 -2.38 -0.02 1.07 16 40 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.08 0.66 6.91 -2.38 -0.02 0.64 16 44 H 0.08 1.01 7.06 -2.39 -0.02 0.99 16 45 H 0.07 1.09 7.34 -2.39 -0.02 1.07 16 46 H 0.12 1.66 8.06 -2.91 -0.02 1.64 16 47 H 0.13 1.33 8.06 -2.92 -0.02 1.31 16 48 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 49 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 50 H 0.13 1.27 7.36 -2.91 -0.02 1.25 16 Total: -1.00 -69.23 405.31 1.72 -67.51 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: -0.33 Total: 27.69 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 4.50 Total: -4.16 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -4.22 Total: -99.60 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -0.11 Total: -36.18 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.88 Total: 44.73 kcal Total: -69.23 1.72 -67.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346568327.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.246 kcal (2) G-P(sol) polarization free energy of solvation -69.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds