Wall clock time and date at job start Wed Apr 1 2020 03:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86796 * 120.00138 * 2 1 4 4 H 1.48506 * 109.47422 * 240.00427 * 3 2 1 5 5 H 1.48494 * 109.47312 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47231 * 120.00327 * 3 2 1 7 7 C 1.39947 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00205 * 163.64565 * 7 2 1 9 9 C 1.41397 * 120.00037 * 343.63957 * 7 2 1 10 10 C 1.40737 * 120.24211 * 334.05018 * 9 7 2 11 11 C 1.37599 * 119.74175 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.25142 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.49959 * 359.97438 * 12 11 10 14 14 C 1.37642 * 120.24933 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.12650 * 180.27171 * 14 13 12 16 16 C 1.50693 * 109.47697 * 264.72761 * 15 14 13 17 17 O 1.21288 * 119.99610 * 359.97438 * 16 15 14 18 18 N 1.34770 * 120.00589 * 180.02562 * 16 15 14 19 19 C 1.47070 * 136.05587 * 359.62434 * 18 16 15 20 20 C 1.53755 * 87.89042 * 152.96821 * 19 18 16 21 21 N 1.46895 * 114.26726 * 139.79201 * 20 19 18 22 22 C 1.46900 * 110.99751 * 111.47884 * 21 20 19 23 23 C 1.53185 * 109.53939 * 274.55108 * 22 21 20 24 24 C 1.53092 * 109.16037 * 183.15438 * 23 22 21 25 25 O 1.42903 * 109.41751 * 57.61013 * 24 23 22 26 26 C 1.42906 * 114.09792 * 298.84105 * 25 24 23 27 27 C 1.53088 * 109.41335 * 61.15614 * 26 25 24 28 28 C 1.47069 * 136.06016 * 180.02562 * 18 16 15 29 29 H 0.97004 * 119.99812 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.12964 * 0.04288 * 10 9 7 31 31 H 1.07996 * 119.87179 * 179.97438 * 11 10 9 32 32 H 1.07998 * 119.74991 * 180.02562 * 12 11 10 33 33 H 1.08002 * 119.87520 * 180.02562 * 13 12 11 34 34 H 1.09003 * 109.47239 * 24.73113 * 15 14 13 35 35 H 1.09003 * 109.47173 * 144.72517 * 15 14 13 36 36 H 1.09000 * 113.46577 * 267.69678 * 19 18 16 37 37 H 1.08994 * 113.46714 * 38.13630 * 19 18 16 38 38 H 1.09001 * 114.39158 * 272.68058 * 20 19 18 39 39 H 1.00903 * 110.99624 * 235.42620 * 21 20 19 40 40 H 1.09000 * 109.54445 * 34.81899 * 22 21 20 41 41 H 1.08994 * 109.52029 * 303.05659 * 23 22 21 42 42 H 1.09000 * 109.52073 * 63.25055 * 23 22 21 43 43 H 1.09004 * 109.48368 * 297.62723 * 24 23 22 44 44 H 1.08994 * 109.48188 * 177.59530 * 24 23 22 45 45 H 1.08997 * 109.47816 * 301.17730 * 26 25 24 46 46 H 1.08997 * 109.48838 * 181.14416 * 26 25 24 47 47 H 1.09003 * 109.52453 * 182.48530 * 27 26 25 48 48 H 1.09000 * 109.52812 * 62.29817 * 27 26 25 49 49 H 1.09000 * 113.46957 * 321.85964 * 28 18 16 50 50 H 1.08999 * 113.46895 * 92.24744 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2126 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6963 1.2124 7 6 2.0079 -1.2120 -0.0005 8 1 3.0552 -1.2309 -0.2639 9 6 1.3439 -2.4119 0.3438 10 6 0.2131 -2.3811 1.1812 11 6 -0.4249 -3.5550 1.5102 12 6 0.0426 -4.7650 1.0205 13 6 1.1553 -4.8072 0.1950 14 6 1.8092 -3.6454 -0.1472 15 6 3.0150 -3.6940 -1.0498 16 6 4.2681 -3.7204 -0.2132 17 8 4.1898 -3.7011 0.9970 18 7 5.4759 -3.7643 -0.8096 19 6 5.9728 -3.8040 -2.1933 20 6 7.2601 -3.1304 -1.6901 21 7 8.4918 -3.6541 -2.2955 22 6 9.1152 -2.6527 -3.1710 23 6 8.4878 -2.7305 -4.5663 24 6 9.1970 -1.7387 -5.4921 25 8 10.5942 -2.0364 -5.5262 26 6 11.2439 -1.9334 -4.2576 27 6 10.6170 -2.9330 -3.2822 28 6 6.8767 -3.8007 -0.3632 29 1 -0.4850 0.8401 0.0004 30 1 -0.1525 -1.4397 1.5639 31 1 -1.2925 -3.5338 2.1530 32 1 -0.4647 -5.6815 1.2836 33 1 1.5105 -5.7553 -0.1811 34 1 2.9712 -4.5914 -1.6668 35 1 3.0247 -2.8125 -1.6909 36 1 6.1304 -4.8150 -2.5690 37 1 5.3963 -3.1838 -2.8795 38 1 7.2197 -2.0413 -1.6690 39 1 9.1382 -3.9672 -1.5867 40 1 8.9598 -1.6573 -2.7548 41 1 8.5998 -3.7405 -4.9602 42 1 7.4293 -2.4779 -4.5042 43 1 9.0504 -0.7248 -5.1195 44 1 8.7833 -1.8200 -6.4972 45 1 11.1240 -0.9222 -3.8689 46 1 12.3049 -2.1550 -4.3733 47 1 11.0812 -2.8253 -2.3018 48 1 10.7719 -3.9472 -3.6501 49 1 7.0705 -3.1775 0.5099 50 1 7.2721 -4.8107 -0.2561 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363492422.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:37 Heat of formation + Delta-G solvation = -25.739654 kcal Electronic energy + Delta-G solvation = -29884.049223 eV Core-core repulsion = 25876.823677 eV Total energy + Delta-G solvation = -4007.225546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.39852 -39.53700 -38.13310 -36.93228 -35.50857 -33.60627 -31.85372 -31.49349 -31.31346 -29.44774 -28.45941 -26.50376 -25.84229 -24.89024 -23.98181 -23.94972 -21.27625 -20.91073 -20.55159 -19.77240 -18.49291 -17.14179 -16.85597 -16.61316 -16.46187 -16.14901 -15.78519 -15.40752 -15.19889 -14.96405 -14.46165 -14.42655 -14.27837 -13.79571 -13.54246 -13.30778 -12.81378 -12.70098 -12.68811 -12.55347 -12.41740 -12.29571 -11.82684 -11.69782 -11.65804 -11.55176 -11.15767 -11.02840 -11.01111 -10.98139 -10.76898 -10.68099 -10.67323 -10.39555 -9.97436 -9.46650 -9.36320 -9.18356 -9.13773 -8.85980 -8.40785 -7.29270 -7.27348 -6.72321 -4.32769 2.77363 2.91533 3.05340 3.08246 3.22809 3.27683 3.29037 3.51460 3.82864 3.93709 4.10224 4.34609 4.48943 4.61823 4.66965 4.77826 4.84112 4.90569 5.01998 5.06233 5.16252 5.22499 5.28756 5.31380 5.45496 5.48440 5.54959 5.61957 5.64653 5.71847 5.79185 5.81547 5.92089 5.99883 6.08127 6.29964 6.35884 6.45588 6.53760 6.71550 6.82523 6.82881 6.96818 7.10124 7.31647 7.44303 7.66334 7.93819 8.05407 8.13280 8.15182 8.33463 8.66084 8.81887 8.93274 9.03416 10.22008 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.002637 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.846947 B =10617.531214 C =12069.563021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.077 3.923 3 Si 0.903 3.097 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.457 4.457 8 H 0.072 0.928 9 C 0.129 3.871 10 C -0.159 4.159 11 C -0.106 4.106 12 C -0.239 4.239 13 C -0.081 4.081 14 C -0.183 4.183 15 C -0.061 4.061 16 C 0.547 3.453 17 O -0.518 6.518 18 N -0.656 5.656 19 C 0.114 3.886 20 C 0.042 3.958 21 N -0.667 5.667 22 C 0.085 3.915 23 C -0.144 4.144 24 C 0.059 3.941 25 O -0.383 6.383 26 C 0.064 3.936 27 C -0.159 4.159 28 C 0.099 3.901 29 H 0.280 0.720 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.347 0.653 40 H 0.048 0.952 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.049 0.951 44 H 0.096 0.904 45 H 0.049 0.951 46 H 0.095 0.905 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.073 0.927 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.179 -2.509 -9.583 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.091 0.909 9 C 0.127 3.873 10 C -0.179 4.179 11 C -0.125 4.125 12 C -0.259 4.259 13 C -0.099 4.099 14 C -0.185 4.185 15 C -0.100 4.100 16 C 0.339 3.661 17 O -0.391 6.391 18 N -0.396 5.396 19 C -0.011 4.011 20 C -0.068 4.068 21 N -0.300 5.300 22 C -0.025 4.025 23 C -0.182 4.182 24 C -0.018 4.018 25 O -0.302 6.302 26 C -0.014 4.014 27 C -0.197 4.197 28 C -0.025 4.025 29 H 0.091 0.909 30 H 0.135 0.865 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.167 0.833 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.114 0.886 45 H 0.068 0.932 46 H 0.113 0.887 47 H 0.091 0.909 48 H 0.101 0.899 49 H 0.091 0.909 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 18.428 -2.688 -9.465 20.890 hybrid contribution 0.525 1.379 0.966 1.764 sum 18.954 -1.309 -8.499 20.813 Atomic orbital electron populations 1.69811 1.07435 1.29137 1.35688 1.25866 0.94694 1.01058 0.92378 0.86459 0.80251 0.80663 0.79878 1.19147 1.20274 1.18928 1.19428 0.97107 0.91000 1.41097 0.90945 1.17331 0.90774 0.91233 0.87967 1.21293 0.99021 0.96692 1.00857 1.20676 0.98639 0.93452 0.99729 1.20308 1.01534 0.96192 1.07845 1.20304 0.95906 0.95519 0.98160 1.19068 0.99311 0.94117 1.06012 1.20182 0.89798 1.02732 0.97320 1.20938 0.82167 0.74302 0.88742 1.90696 1.85566 1.48234 1.14633 1.49623 1.04531 1.76102 1.09326 1.23064 0.91593 1.01057 0.85361 1.23567 0.90375 0.98131 0.94776 1.60471 1.07241 1.38249 1.23990 1.21644 0.93006 0.93768 0.94047 1.22219 1.00332 1.01321 0.94352 1.22640 0.81141 0.97254 1.00758 1.87940 1.21742 1.90646 1.29886 1.22530 0.97095 0.97756 0.84003 1.22411 0.95097 1.01744 1.00442 1.23073 0.82021 1.00483 0.96926 0.90909 0.86516 0.89543 0.89613 0.89754 0.90673 0.88672 0.89397 0.90649 0.89188 0.83330 0.93364 0.90107 0.90599 0.93271 0.88560 0.93240 0.88725 0.90929 0.89928 0.90882 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.70 10.97 55.55 0.61 -20.10 16 2 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 3 Si 0.90 19.01 29.59 -169.99 -5.03 13.98 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.46 -12.22 8.14 -37.74 -0.31 -12.53 16 8 H 0.07 1.90 6.67 -52.48 -0.35 1.55 16 9 C 0.13 3.53 5.56 -106.83 -0.59 2.94 16 10 C -0.16 -4.33 8.69 -38.87 -0.34 -4.67 16 11 C -0.11 -2.64 10.02 -39.66 -0.40 -3.04 16 12 C -0.24 -5.70 10.05 -39.29 -0.39 -6.09 16 13 C -0.08 -1.91 9.66 -39.66 -0.38 -2.30 16 14 C -0.18 -4.54 4.43 -103.92 -0.46 -5.00 16 15 C -0.06 -1.25 5.01 -29.04 -0.15 -1.39 16 16 C 0.55 11.34 7.70 -10.99 -0.08 11.26 16 17 O -0.52 -13.10 16.81 5.55 0.09 -13.01 16 18 N -0.66 -10.32 3.69 -185.04 -0.68 -11.00 16 19 C 0.11 1.30 8.25 -8.37 -0.07 1.23 16 20 C 0.04 0.41 4.39 -67.44 -0.30 0.12 16 21 N -0.67 -5.13 6.41 -99.18 -0.64 -5.77 16 22 C 0.09 0.62 2.57 -67.52 -0.17 0.45 16 23 C -0.14 -1.09 5.64 -26.59 -0.15 -1.24 16 24 C 0.06 0.44 6.84 37.21 0.25 0.70 16 25 O -0.38 -3.41 10.77 -35.23 -0.38 -3.79 16 26 C 0.06 0.42 6.84 37.20 0.25 0.67 16 27 C -0.16 -0.97 5.40 -26.59 -0.14 -1.11 16 28 C 0.10 1.21 8.21 -8.49 -0.07 1.14 16 29 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 30 H 0.12 3.25 6.22 -52.49 -0.33 2.92 16 31 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.07 1.32 8.05 -51.93 -0.42 0.90 16 35 H 0.10 1.93 7.07 -51.93 -0.37 1.56 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 0.94 7.49 -51.93 -0.39 0.55 16 39 H 0.35 2.26 8.20 -39.29 -0.32 1.94 16 40 H 0.05 0.38 7.47 -51.93 -0.39 -0.01 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 403.45 15.07 6.08 6.08 Total: -1.00 -32.20 403.45 -11.57 -43.76 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -8.04 Total: 6.85 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -3.59 Total: -17.01 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.71 Total: -36.87 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.29 Total: -16.80 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.20 -11.57 -43.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363492422.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.024 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds