Wall clock time and date at job start Wed Apr 1 2020 03:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86803 * 119.99661 * 2 1 4 4 H 1.48501 * 109.47103 * 269.99608 * 3 2 1 5 5 H 1.48501 * 109.47279 * 29.99912 * 3 2 1 6 6 H 1.48498 * 109.46747 * 149.99906 * 3 2 1 7 7 C 1.38650 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00048 * 0.02562 * 7 2 1 9 9 O 1.34830 * 120.00326 * 180.02562 * 7 2 1 10 10 C 1.35748 * 117.00101 * 185.05731 * 9 7 2 11 11 C 1.38878 * 120.07147 * 354.46447 * 10 9 7 12 12 C 1.38094 * 119.92859 * 179.72501 * 11 10 9 13 13 C 1.38302 * 120.07461 * 0.27306 * 12 11 10 14 14 C 1.50696 * 119.93469 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47082 * 89.99539 * 14 13 12 16 16 O 1.21279 * 120.00226 * 0.02562 * 15 14 13 17 17 N 1.34784 * 119.99844 * 179.97438 * 15 14 13 18 18 C 1.46501 * 119.99962 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.47025 * 180.02562 * 18 17 15 20 20 H 1.09004 * 109.57820 * 304.73758 * 19 18 17 21 21 C 1.53144 * 109.57923 * 65.00118 * 19 18 17 22 22 N 1.46904 * 109.36546 * 119.79251 * 21 19 18 23 23 C 1.46943 * 111.05762 * 62.00708 * 22 21 19 24 24 C 1.53120 * 109.35368 * 298.04026 * 23 22 21 25 25 C 1.53388 * 109.57891 * 184.34430 * 19 18 17 26 26 C 1.53386 * 108.59277 * 299.16789 * 25 19 18 27 27 C 1.46944 * 111.06130 * 298.00444 * 22 21 19 28 28 C 1.38300 * 120.13444 * 0.02562 * 13 12 11 29 29 C 1.38104 * 120.06842 * 359.97438 * 28 13 12 30 30 H 0.96992 * 120.00121 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.03039 * 359.97438 * 11 10 9 32 32 H 1.08002 * 119.96210 * 180.25485 * 12 11 10 33 33 H 1.08993 * 109.47252 * 210.00252 * 14 13 12 34 34 H 1.09004 * 109.47067 * 330.00237 * 14 13 12 35 35 H 0.96996 * 119.99369 * 0.02562 * 17 15 14 36 36 H 1.08997 * 109.46825 * 300.00490 * 18 17 15 37 37 H 1.09004 * 109.46621 * 60.00532 * 18 17 15 38 38 H 1.08999 * 109.48712 * 239.75933 * 21 19 18 39 39 H 1.08998 * 109.48406 * 359.80033 * 21 19 18 40 40 H 1.09007 * 109.48914 * 58.00356 * 23 22 21 41 41 H 1.08999 * 109.48943 * 178.07275 * 23 22 21 42 42 H 1.08995 * 109.57838 * 240.12812 * 24 23 22 43 43 H 1.08999 * 109.68223 * 119.80080 * 24 23 22 44 44 H 1.09001 * 110.11152 * 59.79856 * 25 19 18 45 45 H 1.09007 * 109.57581 * 181.19554 * 26 25 19 46 46 H 1.08998 * 109.68670 * 60.87184 * 26 25 19 47 47 H 1.08992 * 109.49012 * 181.92911 * 27 22 21 48 48 H 1.08999 * 109.49353 * 301.98285 * 27 22 21 49 49 H 1.07996 * 119.96721 * 179.97438 * 28 13 12 50 50 H 1.08003 * 120.03314 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4690 -2.1360 0.0005 9 8 3.3572 -1.2007 0.0011 10 6 3.9735 -2.4056 -0.1051 11 6 3.2236 -3.5744 -0.0921 12 6 3.8531 -4.7982 -0.2060 13 6 5.2294 -4.8611 -0.3271 14 6 5.9130 -6.1982 -0.4517 15 6 6.0196 -6.5742 -1.9072 16 8 5.5837 -5.8295 -2.7594 17 7 6.6002 -7.7377 -2.2619 18 6 6.7043 -8.1030 -3.6768 19 6 7.3983 -9.4606 -3.8033 20 1 8.3624 -9.4267 -3.2959 21 6 6.5227 -10.5456 -3.1695 22 7 6.1722 -11.5450 -4.1875 23 6 7.3738 -12.2100 -4.7102 24 6 8.2740 -11.1727 -5.3871 25 6 7.6060 -9.7956 -5.2857 26 6 6.2342 -9.8656 -5.9682 27 6 5.3910 -10.9396 -5.2749 28 6 5.9795 -3.6992 -0.3341 29 6 5.3559 -2.4722 -0.2206 30 1 -0.4850 0.8400 -0.0004 31 1 2.1489 -3.5260 0.0028 32 1 3.2701 -5.7073 -0.2001 33 1 6.9111 -6.1378 -0.0180 34 1 5.3322 -6.9540 0.0771 35 1 6.9491 -8.3331 -1.5803 36 1 5.7062 -8.1636 -4.1107 37 1 7.2851 -7.3470 -4.2054 38 1 7.0704 -11.0278 -2.3598 39 1 5.6129 -10.0937 -2.7744 40 1 7.9149 -12.6810 -3.8895 41 1 7.0826 -12.9684 -5.4369 42 1 8.4101 -11.4361 -6.4360 43 1 9.2429 -11.1462 -4.8885 44 1 8.2219 -9.0314 -5.7598 45 1 6.3620 -10.1240 -7.0194 46 1 5.7342 -8.9004 -5.8875 47 1 5.1161 -11.7085 -5.9969 48 1 4.4886 -10.4858 -4.8654 49 1 7.0541 -3.7514 -0.4284 50 1 5.9423 -1.5653 -0.2257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434404673.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:09 Heat of formation + Delta-G solvation = -37.849091 kcal Electronic energy + Delta-G solvation = -29362.425307 eV Core-core repulsion = 25354.674657 eV Total energy + Delta-G solvation = -4007.750650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.38384 -39.72030 -38.86245 -36.68581 -35.26572 -32.82661 -32.47201 -31.89850 -31.41830 -31.07209 -30.18833 -27.36497 -25.84341 -24.70245 -23.54963 -23.36559 -22.13327 -22.02364 -21.01540 -20.03643 -17.85443 -17.82165 -17.31403 -17.06341 -17.01315 -16.80601 -16.07167 -15.48036 -15.41651 -14.76193 -14.53288 -14.10188 -13.83941 -13.68550 -13.61114 -13.47483 -13.41797 -13.35756 -12.71681 -12.66521 -12.57164 -12.56112 -12.51197 -12.40058 -12.16486 -11.99442 -11.93719 -11.54967 -11.26483 -11.02450 -10.89582 -10.72223 -10.64333 -10.63036 -10.57126 -10.11897 -9.71568 -9.33978 -9.15620 -8.81878 -8.64118 -8.18753 -7.25908 -6.37498 -4.03768 2.20124 2.20672 2.77324 3.14762 3.25218 3.29333 3.43497 3.57089 4.04830 4.13280 4.27473 4.33472 4.51144 4.56210 4.69286 4.70710 4.75059 4.81402 4.89733 4.94995 4.97062 5.00628 5.11091 5.15245 5.26009 5.28266 5.34597 5.40826 5.44441 5.46909 5.54556 5.61749 5.63452 5.70005 5.70719 5.72110 5.75179 5.80005 5.86344 6.17940 6.33380 6.37949 6.61469 6.64208 6.66375 6.84380 7.06959 7.26982 7.35519 7.44608 7.66766 7.85101 8.08519 8.32087 8.97948 9.60899 10.70249 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024647 B = 0.001798 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.769560 B =15571.332809 C =15864.533880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.062 3.938 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.106 0.894 9 O -0.218 6.218 10 C 0.162 3.838 11 C -0.219 4.219 12 C -0.058 4.058 13 C -0.161 4.161 14 C -0.082 4.082 15 C 0.508 3.492 16 O -0.520 6.520 17 N -0.740 5.740 18 C 0.128 3.872 19 C -0.129 4.129 20 H 0.080 0.920 21 C 0.054 3.946 22 N -0.530 5.530 23 C 0.052 3.948 24 C -0.148 4.148 25 C -0.080 4.080 26 C -0.156 4.156 27 C 0.052 3.948 28 C -0.062 4.062 29 C -0.191 4.191 30 H 0.279 0.721 31 H 0.133 0.867 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.397 0.603 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.109 0.891 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.816 -25.348 -7.534 31.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.110 3.890 11 C -0.238 4.238 12 C -0.076 4.076 13 C -0.162 4.162 14 C -0.121 4.121 15 C 0.295 3.705 16 O -0.394 6.394 17 N -0.394 5.394 18 C 0.004 3.996 19 C -0.150 4.150 20 H 0.098 0.902 21 C -0.074 4.074 22 N -0.250 5.250 23 C -0.077 4.077 24 C -0.188 4.188 25 C -0.100 4.100 26 C -0.195 4.195 27 C -0.077 4.077 28 C -0.080 4.080 29 C -0.211 4.211 30 H 0.089 0.911 31 H 0.150 0.850 32 H 0.125 0.875 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.231 0.769 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.095 0.905 49 H 0.128 0.872 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 17.032 -24.798 -7.902 31.104 hybrid contribution 0.862 1.018 -0.239 1.355 sum 17.894 -23.780 -8.141 30.854 Atomic orbital electron populations 1.69648 1.05542 1.28418 1.48255 1.24468 0.95037 0.98812 0.95754 0.86177 0.80301 0.81439 0.78951 1.19907 1.20821 1.18380 1.20771 0.76920 0.96627 1.52046 0.87634 1.83568 1.22602 1.25785 1.80390 1.19120 0.91701 0.85477 0.92719 1.21224 1.01050 0.91809 1.09764 1.20566 0.93259 0.96732 0.97080 1.18702 0.93574 0.92583 1.11370 1.20428 1.02242 0.97063 0.92409 1.21026 0.77035 0.80362 0.92085 1.90754 1.45992 1.50224 1.52441 1.46086 1.62861 1.22384 1.08102 1.21371 1.00826 0.94808 0.82632 1.22130 1.00310 0.95394 0.97139 0.90186 1.22349 0.99420 0.91278 0.94383 1.62484 1.20257 1.29201 1.13013 1.22209 0.90184 0.96024 0.99251 1.22250 0.99467 0.95356 1.01680 1.21090 0.96941 0.97430 0.94537 1.22341 0.96110 1.00939 1.00071 1.22205 0.96350 0.96097 0.93007 1.20397 0.98132 0.91392 0.98112 1.20147 0.91951 0.97741 1.11231 0.91107 0.84964 0.87533 0.88940 0.88860 0.76904 0.91382 0.91853 0.90490 0.89943 0.90658 0.90659 0.91454 0.91555 0.90097 0.91481 0.90908 0.90626 0.90465 0.87247 0.86574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.92 13.96 55.48 0.77 -25.14 16 2 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 3 Si 0.91 22.18 28.62 -169.99 -4.86 17.32 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.26 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.39 -11.23 9.95 30.88 0.31 -10.93 16 8 H 0.11 3.12 5.44 -52.49 -0.29 2.83 16 9 O -0.22 -5.96 8.59 0.05 0.00 -5.95 16 10 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 11 C -0.22 -4.95 9.17 -39.40 -0.36 -5.31 16 12 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 13 C -0.16 -2.74 4.38 -104.58 -0.46 -3.20 16 14 C -0.08 -0.97 5.83 -29.04 -0.17 -1.14 16 15 C 0.51 6.76 7.82 -10.98 -0.09 6.68 16 16 O -0.52 -9.70 16.03 5.56 0.09 -9.61 16 17 N -0.74 -6.71 5.20 -60.29 -0.31 -7.02 16 18 C 0.13 1.14 4.35 -4.04 -0.02 1.12 16 19 C -0.13 -0.81 2.29 -90.35 -0.21 -1.02 16 20 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 21 C 0.05 0.35 5.36 -3.75 -0.02 0.33 16 22 N -0.53 -3.73 5.22 -234.30 -1.22 -4.95 16 23 C 0.05 0.29 6.09 -3.74 -0.02 0.27 16 24 C -0.15 -0.78 5.75 -26.47 -0.15 -0.93 16 25 C -0.08 -0.50 2.98 -90.02 -0.27 -0.77 16 26 C -0.16 -1.04 5.39 -26.46 -0.14 -1.18 16 27 C 0.05 0.36 6.09 -3.73 -0.02 0.34 16 28 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 29 C -0.19 -3.98 9.99 -39.39 -0.39 -4.38 16 30 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.13 3.11 5.64 -52.49 -0.30 2.82 16 32 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 33 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 34 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 35 H 0.40 2.35 8.24 -40.82 -0.34 2.02 16 36 H 0.07 0.72 6.65 -51.93 -0.35 0.37 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.61 7.43 -51.93 -0.39 0.23 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.56 6.54 -51.93 -0.34 0.22 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 50 H 0.12 2.25 8.06 -52.48 -0.42 1.82 16 LS Contribution 394.07 15.07 5.94 5.94 Total: -1.00 -33.68 394.07 -10.62 -44.30 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.88 Total: 2.88 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -3.14 Total: -17.76 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: -0.76 Total: -37.11 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.09 Total: -15.57 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.86 Total: 17.32 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.68 -10.62 -44.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434404673.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.452 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds