Wall clock time and date at job start Wed Apr 1 2020 03:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86803 * 119.99661 * 2 1 4 4 H 1.48501 * 109.47103 * 269.99608 * 3 2 1 5 5 H 1.48501 * 109.47279 * 29.99912 * 3 2 1 6 6 H 1.48498 * 109.46747 * 149.99906 * 3 2 1 7 7 C 1.38650 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00048 * 0.02562 * 7 2 1 9 9 O 1.34830 * 120.00326 * 180.02562 * 7 2 1 10 10 C 1.35748 * 117.00101 * 185.05731 * 9 7 2 11 11 C 1.38878 * 120.07147 * 354.46447 * 10 9 7 12 12 C 1.38094 * 119.92859 * 179.72501 * 11 10 9 13 13 C 1.38302 * 120.07461 * 0.27306 * 12 11 10 14 14 C 1.50696 * 119.93469 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47082 * 89.99539 * 14 13 12 16 16 O 1.21279 * 120.00226 * 0.02562 * 15 14 13 17 17 N 1.34784 * 119.99844 * 179.97438 * 15 14 13 18 18 C 1.46501 * 119.99962 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.47025 * 180.02562 * 18 17 15 20 20 H 1.09004 * 109.57820 * 304.73758 * 19 18 17 21 21 C 1.53144 * 109.57923 * 65.00118 * 19 18 17 22 22 N 1.46904 * 109.36546 * 119.79251 * 21 19 18 23 23 C 1.46943 * 111.05762 * 62.00708 * 22 21 19 24 24 C 1.53120 * 109.35368 * 298.04026 * 23 22 21 25 25 C 1.53388 * 109.57891 * 184.34430 * 19 18 17 26 26 C 1.53386 * 108.59277 * 299.16789 * 25 19 18 27 27 C 1.46944 * 111.06130 * 298.00444 * 22 21 19 28 28 C 1.38300 * 120.13444 * 0.02562 * 13 12 11 29 29 C 1.38104 * 120.06842 * 359.97438 * 28 13 12 30 30 H 0.96992 * 120.00121 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.03039 * 359.97438 * 11 10 9 32 32 H 1.08002 * 119.96210 * 180.25485 * 12 11 10 33 33 H 1.08993 * 109.47252 * 210.00252 * 14 13 12 34 34 H 1.09004 * 109.47067 * 330.00237 * 14 13 12 35 35 H 0.96996 * 119.99369 * 0.02562 * 17 15 14 36 36 H 1.08997 * 109.46825 * 300.00490 * 18 17 15 37 37 H 1.09004 * 109.46621 * 60.00532 * 18 17 15 38 38 H 1.08999 * 109.48712 * 239.75933 * 21 19 18 39 39 H 1.08998 * 109.48406 * 359.80033 * 21 19 18 40 40 H 1.09007 * 109.48914 * 58.00356 * 23 22 21 41 41 H 1.08999 * 109.48943 * 178.07275 * 23 22 21 42 42 H 1.08995 * 109.57838 * 240.12812 * 24 23 22 43 43 H 1.08999 * 109.68223 * 119.80080 * 24 23 22 44 44 H 1.09001 * 110.11152 * 59.79856 * 25 19 18 45 45 H 1.09007 * 109.57581 * 181.19554 * 26 25 19 46 46 H 1.08998 * 109.68670 * 60.87184 * 26 25 19 47 47 H 1.08992 * 109.49012 * 181.92911 * 27 22 21 48 48 H 1.08999 * 109.49353 * 301.98285 * 27 22 21 49 49 H 1.07996 * 119.96721 * 179.97438 * 28 13 12 50 50 H 1.08003 * 120.03314 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4690 -2.1360 0.0005 9 8 3.3572 -1.2007 0.0011 10 6 3.9735 -2.4056 -0.1051 11 6 3.2236 -3.5744 -0.0921 12 6 3.8531 -4.7982 -0.2060 13 6 5.2294 -4.8611 -0.3271 14 6 5.9130 -6.1982 -0.4517 15 6 6.0196 -6.5742 -1.9072 16 8 5.5837 -5.8295 -2.7594 17 7 6.6002 -7.7377 -2.2619 18 6 6.7043 -8.1030 -3.6768 19 6 7.3983 -9.4606 -3.8033 20 1 8.3624 -9.4267 -3.2959 21 6 6.5227 -10.5456 -3.1695 22 7 6.1722 -11.5450 -4.1875 23 6 7.3738 -12.2100 -4.7102 24 6 8.2740 -11.1727 -5.3871 25 6 7.6060 -9.7956 -5.2857 26 6 6.2342 -9.8656 -5.9682 27 6 5.3910 -10.9396 -5.2749 28 6 5.9795 -3.6992 -0.3341 29 6 5.3559 -2.4722 -0.2206 30 1 -0.4850 0.8400 -0.0004 31 1 2.1489 -3.5260 0.0028 32 1 3.2701 -5.7073 -0.2001 33 1 6.9111 -6.1378 -0.0180 34 1 5.3322 -6.9540 0.0771 35 1 6.9491 -8.3331 -1.5803 36 1 5.7062 -8.1636 -4.1107 37 1 7.2851 -7.3470 -4.2054 38 1 7.0704 -11.0278 -2.3598 39 1 5.6129 -10.0937 -2.7744 40 1 7.9149 -12.6810 -3.8895 41 1 7.0826 -12.9684 -5.4369 42 1 8.4101 -11.4361 -6.4360 43 1 9.2429 -11.1462 -4.8885 44 1 8.2219 -9.0314 -5.7598 45 1 6.3620 -10.1240 -7.0194 46 1 5.7342 -8.9004 -5.8875 47 1 5.1161 -11.7085 -5.9969 48 1 4.4886 -10.4858 -4.8654 49 1 7.0541 -3.7514 -0.4284 50 1 5.9423 -1.5653 -0.2257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434404673.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:08 Heat of formation + Delta-G solvation = -61.086620 kcal Electronic energy + Delta-G solvation = -29363.432962 eV Core-core repulsion = 25354.674657 eV Total energy + Delta-G solvation = -4008.758305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.93418 -41.06684 -40.33208 -38.33219 -36.16188 -34.52552 -33.49630 -32.97536 -32.00832 -31.89175 -31.79351 -28.68429 -27.22491 -26.12496 -24.06733 -23.86034 -23.71329 -22.83251 -22.27196 -21.23764 -19.82345 -19.12320 -18.37664 -17.97462 -17.67266 -17.38572 -16.86062 -16.76027 -16.38653 -16.16981 -15.86452 -15.69058 -15.58664 -15.12328 -14.76146 -14.57061 -14.33790 -14.16044 -14.07641 -13.98184 -13.84792 -13.26314 -13.08963 -13.06452 -13.04260 -12.97440 -12.83610 -12.55552 -12.51009 -12.45255 -12.40064 -12.30831 -11.93301 -11.50012 -11.28576 -11.21042 -11.06872 -10.94686 -10.77391 -10.05570 -9.79051 -9.14791 -8.98197 -8.51032 -6.23597 0.58325 0.61835 1.29285 1.34277 1.50606 1.74873 2.25681 2.27213 2.78536 3.04785 3.08421 3.18588 3.50847 3.65182 3.80874 3.85583 4.02504 4.04559 4.10182 4.15625 4.22489 4.25375 4.30315 4.35043 4.41566 4.48097 4.50085 4.57484 4.59266 4.70896 4.74691 4.81818 4.83633 4.88482 4.98616 4.99065 5.01504 5.15179 5.17088 5.22899 5.25020 5.25468 5.32250 5.37414 5.51126 5.56489 5.73910 5.79477 5.90984 6.13484 6.19756 6.24867 6.65025 6.83081 7.38333 7.57848 8.60778 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024647 B = 0.001798 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.769560 B =15571.332809 C =15864.533880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.008 3.992 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.400 4.400 8 H 0.079 0.921 9 O -0.246 6.246 10 C 0.117 3.883 11 C -0.239 4.239 12 C -0.066 4.066 13 C -0.137 4.137 14 C -0.079 4.079 15 C 0.509 3.491 16 O -0.584 6.584 17 N -0.716 5.716 18 C 0.131 3.869 19 C -0.116 4.116 20 H 0.098 0.902 21 C 0.055 3.945 22 N -0.541 5.541 23 C 0.051 3.949 24 C -0.142 4.142 25 C -0.083 4.083 26 C -0.154 4.154 27 C 0.052 3.948 28 C -0.060 4.060 29 C -0.194 4.194 30 H 0.285 0.715 31 H 0.106 0.894 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.127 0.873 35 H 0.418 0.582 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.055 0.945 47 H 0.080 0.920 48 H 0.064 0.936 49 H 0.154 0.846 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.851 -27.896 -7.106 36.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.189 1.189 6 H -0.186 1.186 7 C -0.476 4.476 8 H 0.096 0.904 9 O -0.154 6.154 10 C 0.068 3.932 11 C -0.258 4.258 12 C -0.084 4.084 13 C -0.138 4.138 14 C -0.118 4.118 15 C 0.297 3.703 16 O -0.463 6.463 17 N -0.370 5.370 18 C 0.007 3.993 19 C -0.136 4.136 20 H 0.116 0.884 21 C -0.073 4.073 22 N -0.261 5.261 23 C -0.077 4.077 24 C -0.181 4.181 25 C -0.102 4.102 26 C -0.193 4.193 27 C -0.076 4.076 28 C -0.077 4.077 29 C -0.213 4.213 30 H 0.094 0.906 31 H 0.124 0.876 32 H 0.150 0.850 33 H 0.154 0.846 34 H 0.145 0.855 35 H 0.255 0.745 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.099 0.901 48 H 0.082 0.918 49 H 0.171 0.829 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 21.119 -27.441 -7.451 35.420 hybrid contribution -0.213 1.425 -0.434 1.505 sum 20.906 -26.016 -7.885 34.294 Atomic orbital electron populations 1.69732 1.06872 1.29595 1.50252 1.25316 0.95955 1.02232 0.95549 0.85189 0.78823 0.77292 0.79201 1.19307 1.18863 1.18641 1.20705 0.78167 0.96097 1.52648 0.90389 1.83505 1.21198 1.27444 1.83257 1.19687 0.93292 0.85076 0.95140 1.21253 1.00062 0.93386 1.11147 1.20917 0.94830 0.96104 0.96516 1.19325 0.92796 0.95273 1.06402 1.20563 1.04626 0.94580 0.92074 1.21201 0.76415 0.80695 0.92013 1.90760 1.49019 1.52430 1.54078 1.45853 1.61046 1.21280 1.08830 1.21327 0.99843 0.96010 0.82128 1.22049 1.00653 0.93504 0.97434 0.88397 1.22360 0.99040 0.91220 0.94678 1.62489 1.21099 1.29408 1.13132 1.22271 0.89704 0.96030 0.99713 1.22205 0.99627 0.94211 1.02059 1.21120 0.96493 0.98242 0.94381 1.22307 0.96500 0.99984 1.00529 1.22162 0.96014 0.96199 0.93230 1.20954 1.00407 0.90245 0.96144 1.20512 0.90542 0.99873 1.10388 0.90560 0.87647 0.84987 0.84601 0.85494 0.74478 0.93413 0.93294 0.88700 0.91171 0.89657 0.90475 0.91155 0.90494 0.90302 0.91031 0.92619 0.90148 0.91788 0.82868 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.96 13.96 21.61 0.30 -56.66 16 2 C 0.01 0.45 5.49 84.83 0.47 0.92 16 3 Si 0.97 47.18 28.62 68.60 1.96 49.15 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.40 -24.71 9.95 67.92 0.68 -24.04 16 8 H 0.08 5.06 5.44 -2.91 -0.02 5.05 16 9 O -0.25 -14.13 8.59 -22.72 -0.20 -14.33 16 10 C 0.12 5.85 6.65 22.58 0.15 6.00 16 11 C -0.24 -11.31 9.17 22.39 0.21 -11.11 16 12 C -0.07 -2.43 9.69 22.25 0.22 -2.22 16 13 C -0.14 -4.22 4.38 -19.84 -0.09 -4.31 16 14 C -0.08 -1.47 5.83 29.10 0.17 -1.30 16 15 C 0.51 11.85 7.82 87.66 0.69 12.54 16 16 O -0.58 -21.01 16.03 -3.03 -0.05 -21.06 16 17 N -0.72 -10.48 5.20 -463.05 -2.41 -12.89 16 18 C 0.13 2.11 4.35 86.38 0.38 2.49 16 19 C -0.12 -1.14 2.29 -10.62 -0.02 -1.16 16 20 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 21 C 0.06 0.55 5.36 86.35 0.46 1.02 16 22 N -0.54 -6.48 5.22 -895.18 -4.67 -11.16 16 23 C 0.05 0.43 6.09 86.33 0.53 0.96 16 24 C -0.14 -1.08 5.75 30.77 0.18 -0.91 16 25 C -0.08 -0.86 2.98 -10.40 -0.03 -0.90 16 26 C -0.15 -1.96 5.39 30.77 0.17 -1.79 16 27 C 0.05 0.68 6.09 86.34 0.53 1.21 16 28 C -0.06 -1.94 9.69 22.25 0.22 -1.72 16 29 C -0.19 -7.94 9.99 22.39 0.22 -7.72 16 30 H 0.28 16.05 8.31 -92.71 -0.77 15.28 16 31 H 0.11 5.46 5.64 -2.91 -0.02 5.44 16 32 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16 33 H 0.14 1.51 8.08 -2.39 -0.02 1.49 16 34 H 0.13 1.65 8.08 -2.38 -0.02 1.63 16 35 H 0.42 2.86 8.24 -92.71 -0.76 2.10 16 36 H 0.05 1.00 6.65 -2.39 -0.02 0.98 16 37 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.07 0.88 7.43 -2.39 -0.02 0.87 16 40 H 0.08 0.57 8.14 -2.38 -0.02 0.56 16 41 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 46 H 0.06 0.89 6.54 -2.39 -0.02 0.87 16 47 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 48 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 50 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -80.02 394.07 0.22 -79.80 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.18 Total: 19.18 kcal Atomic # 6 Polarization: -37.13 SS G_CDS: 5.10 Total: -32.04 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -6.78 Total: -80.71 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -0.24 Total: -35.39 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.96 Total: 49.15 kcal Total: -80.02 0.22 -79.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434404673.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.713 kcal (2) G-P(sol) polarization free energy of solvation -80.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds