Wall clock time and date at job start Wed Apr 1 2020 02:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00147 * 2 1 4 4 H 1.48496 * 109.47345 * 240.00214 * 3 2 1 5 5 H 1.48499 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47005 * 120.00218 * 3 2 1 7 7 C 1.37882 * 119.99585 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99451 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00332 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47258 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47394 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47377 * 180.02562 * 11 10 9 13 13 C 1.34781 * 120.00034 * 180.02562 * 12 11 10 14 14 O 1.21584 * 119.99832 * 359.97438 * 13 12 11 15 15 N 1.34769 * 119.99913 * 179.72502 * 13 12 11 16 16 C 1.48092 * 127.85088 * 359.95264 * 15 13 12 17 17 C 1.54624 * 104.59752 * 140.11498 * 16 15 13 18 18 H 1.09011 * 113.08849 * 147.49128 * 17 16 15 19 19 C 1.54391 * 108.93622 * 273.64468 * 17 16 15 20 20 O 1.44382 * 104.91444 * 87.02988 * 19 17 16 21 21 C 1.44377 * 105.25850 * 40.76580 * 20 19 17 22 22 C 1.54390 * 104.92855 * 319.24796 * 21 20 19 23 23 C 1.50700 * 112.71080 * 147.23633 * 22 21 20 24 24 C 1.38229 * 119.99859 * 9.63464 * 23 22 21 25 25 C 1.38233 * 120.00178 * 179.76806 * 24 23 22 26 26 C 1.38234 * 119.99684 * 0.50406 * 25 24 23 27 27 C 1.38237 * 120.00235 * 359.74721 * 26 25 24 28 28 C 1.38232 * 119.99735 * 189.90685 * 23 22 21 29 29 C 1.48087 * 127.85092 * 180.27169 * 15 13 12 30 30 H 0.96999 * 119.99844 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.47065 * 60.00249 * 9 7 2 32 32 H 1.08999 * 109.47128 * 300.00294 * 9 7 2 33 33 H 1.09003 * 109.46906 * 60.00119 * 10 9 7 34 34 H 1.09003 * 109.47493 * 300.00622 * 10 9 7 35 35 H 1.09003 * 109.46948 * 60.00205 * 11 10 9 36 36 H 1.09003 * 109.47357 * 300.00765 * 11 10 9 37 37 H 0.96993 * 119.99906 * 0.02562 * 12 11 10 38 38 H 1.08998 * 110.37907 * 258.98121 * 16 15 13 39 39 H 1.09004 * 110.38025 * 21.32964 * 16 15 13 40 40 H 1.09000 * 110.35342 * 328.16400 * 19 17 16 41 41 H 1.08999 * 110.34956 * 205.88526 * 19 17 16 42 42 H 1.09004 * 110.34700 * 200.38096 * 21 20 19 43 43 H 1.09008 * 110.43838 * 78.15456 * 21 20 19 44 44 H 1.08004 * 119.99975 * 0.02562 * 24 23 22 45 45 H 1.07998 * 120.00594 * 180.23373 * 25 24 23 46 46 H 1.08001 * 120.00138 * 179.72769 * 26 25 24 47 47 H 1.08000 * 120.00304 * 179.97438 * 27 26 25 48 48 H 1.07992 * 120.00617 * 0.02562 * 28 23 22 49 49 H 1.09002 * 110.37948 * 338.67995 * 29 15 13 50 50 H 1.09005 * 110.38482 * 101.03301 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 7 2.4322 -6.1007 0.0007 13 6 1.9829 -7.3714 0.0008 14 8 0.7875 -7.5935 0.0009 15 7 2.8586 -8.3957 -0.0042 16 6 4.3379 -8.3266 -0.0112 17 6 4.7854 -9.4561 0.9453 18 1 5.7324 -9.9115 0.6554 19 6 4.8032 -8.9116 2.3899 20 8 3.4575 -9.1043 2.8763 21 6 3.0582 -10.4020 2.3853 22 6 3.6033 -10.4663 0.9423 23 6 4.0072 -11.8597 0.5344 24 6 3.6878 -12.9359 1.3411 25 6 4.0541 -14.2145 0.9647 26 6 4.7488 -14.4159 -0.2133 27 6 5.0727 -13.3392 -1.0175 28 6 4.7019 -12.0610 -0.6436 29 6 2.5603 -9.8462 -0.0105 30 1 -0.4850 0.8401 0.0004 31 1 0.6240 -2.5568 -0.8903 32 1 0.6246 -2.5571 0.8896 33 1 2.8718 -3.6044 0.8895 34 1 2.8719 -3.6044 -0.8905 35 1 0.8533 -5.0451 -0.8897 36 1 0.8537 -5.0446 0.8903 37 1 3.3858 -5.9234 0.0011 38 1 4.7214 -8.5031 -1.0161 39 1 4.6744 -7.3584 0.3597 40 1 5.0593 -7.8521 2.3926 41 1 5.5105 -9.4749 2.9985 42 1 1.9717 -10.4890 2.3844 43 1 3.5005 -11.1915 2.9931 44 1 3.1485 -12.7781 2.2634 45 1 3.8013 -15.0558 1.5930 46 1 5.0388 -15.4144 -0.5053 47 1 5.6159 -13.4965 -1.9376 48 1 4.9556 -11.2198 -1.2714 49 1 1.5517 -10.0279 0.3607 50 1 2.6748 -10.2530 -1.0153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001477823575.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:25 Heat of formation + Delta-G solvation = -43.677351 kcal Electronic energy + Delta-G solvation = -29989.192484 eV Core-core repulsion = 25981.189101 eV Total energy + Delta-G solvation = -4008.003383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.59854 -39.50284 -38.82466 -36.24810 -35.25820 -33.52862 -33.04467 -31.63368 -31.14163 -31.01571 -29.27537 -26.98906 -26.35913 -25.48627 -23.68330 -22.89013 -22.68864 -21.57746 -20.56620 -19.92534 -19.77568 -18.14067 -17.76266 -16.58475 -16.40570 -16.10729 -15.77983 -15.43467 -15.36813 -15.27572 -14.79097 -14.47147 -14.34452 -14.11891 -14.03981 -13.76984 -13.60841 -13.25848 -13.17121 -13.05306 -12.40070 -12.24939 -11.94701 -11.83528 -11.74655 -11.67056 -11.60883 -11.36003 -11.27729 -11.02331 -10.86590 -10.67950 -10.59871 -10.11733 -9.99586 -9.82319 -9.41494 -9.34802 -9.17066 -9.10784 -8.91624 -8.45817 -8.34354 -5.99090 -4.02160 0.87822 0.96687 2.61399 3.27156 3.33504 3.38216 3.38364 3.40079 3.58395 3.79462 4.01796 4.23140 4.32080 4.36803 4.46350 4.48592 4.56340 4.67503 4.69495 4.75330 4.96154 5.05887 5.09360 5.14652 5.28466 5.29683 5.36077 5.36404 5.39987 5.45096 5.46426 5.54065 5.55802 5.61089 5.74442 5.85990 5.99070 6.07465 6.09329 6.14200 6.22869 6.49386 6.55990 6.58293 6.66441 6.87633 7.05994 7.16453 7.66606 7.80129 7.99843 8.13913 8.40761 8.79360 9.04211 9.61595 11.12142 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026513 B = 0.001875 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.812992 B =14927.803925 C =14995.775030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.119 4.119 11 C 0.136 3.864 12 N -0.738 5.738 13 C 0.730 3.270 14 O -0.589 6.589 15 N -0.637 5.637 16 C 0.110 3.890 17 C -0.126 4.126 18 H 0.109 0.891 19 C 0.051 3.949 20 O -0.358 6.358 21 C 0.056 3.944 22 C -0.067 4.067 23 C -0.058 4.058 24 C -0.117 4.117 25 C -0.116 4.116 26 C -0.122 4.122 27 C -0.116 4.116 28 C -0.110 4.110 29 C 0.145 3.855 30 H 0.261 0.739 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.392 0.608 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.065 0.935 44 H 0.126 0.874 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.123 0.877 49 H 0.088 0.912 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.548 -31.339 1.121 34.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.157 4.157 11 C 0.013 3.987 12 N -0.392 5.392 13 C 0.432 3.568 14 O -0.467 6.467 15 N -0.376 5.376 16 C -0.014 4.014 17 C -0.146 4.146 18 H 0.127 0.873 19 C -0.026 4.026 20 O -0.276 6.276 21 C -0.021 4.021 22 C -0.068 4.068 23 C -0.059 4.059 24 C -0.135 4.135 25 C -0.134 4.134 26 C -0.140 4.140 27 C -0.134 4.134 28 C -0.128 4.128 29 C 0.021 3.979 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.225 0.775 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.083 0.917 44 H 0.144 0.856 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.141 0.859 48 H 0.141 0.859 49 H 0.106 0.894 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.232 -31.061 1.255 33.786 hybrid contribution 1.147 0.822 -0.158 1.420 sum 14.380 -30.239 1.098 33.502 Atomic orbital electron populations 1.69960 1.06035 1.26758 1.50467 1.25033 0.94866 0.99269 0.95321 0.86639 0.79549 0.83133 0.78541 1.20284 1.21280 1.20273 1.21165 0.92927 0.90959 1.51022 0.92731 1.19023 0.93855 0.90759 0.97712 1.21882 0.99787 0.93338 1.00743 1.21518 0.91275 0.84042 1.01897 1.45350 1.10388 1.04192 1.79315 1.15322 0.84011 0.79921 0.77524 1.90919 1.13586 1.83636 1.58542 1.47801 1.05474 1.05264 1.79031 1.22383 0.81290 0.98735 0.99017 1.23672 0.98463 0.95300 0.97125 0.87256 1.23467 0.85346 1.01866 0.91905 1.89226 1.29282 1.34831 1.74284 1.23579 1.00981 0.86319 0.91210 1.21680 0.95909 0.91876 0.97373 1.19240 0.98608 0.92773 0.95243 1.21138 1.00273 0.92244 0.99797 1.21156 0.98445 0.96900 0.96910 1.21198 0.98789 0.99020 0.94998 1.21159 0.99962 0.92579 0.99729 1.20996 0.98349 0.97359 0.96119 1.22062 0.98575 0.79133 0.98140 0.92891 0.96236 0.96213 0.92806 0.92838 0.91963 0.91921 0.77480 0.90892 0.90078 0.88685 0.92076 0.88638 0.91701 0.85618 0.85927 0.86089 0.85919 0.85899 0.89375 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.62 4.97 -27.89 -0.14 0.49 16 10 C -0.12 -2.40 5.27 -26.74 -0.14 -2.54 16 11 C 0.14 2.54 5.67 -4.05 -0.02 2.51 16 12 N -0.74 -11.60 5.53 -65.23 -0.36 -11.96 16 13 C 0.73 12.18 8.57 -86.92 -0.74 11.43 16 14 O -0.59 -12.35 16.61 5.29 0.09 -12.27 16 15 N -0.64 -7.79 3.15 -175.03 -0.55 -8.34 16 16 C 0.11 0.90 6.35 -2.31 -0.01 0.89 16 17 C -0.13 -0.88 3.57 -87.71 -0.31 -1.20 16 18 H 0.11 0.56 7.64 -51.92 -0.40 0.17 16 19 C 0.05 0.42 7.05 37.89 0.27 0.69 16 20 O -0.36 -4.22 11.49 -35.23 -0.40 -4.63 16 21 C 0.06 0.51 5.83 37.89 0.22 0.73 16 22 C -0.07 -0.53 0.89 -152.94 -0.14 -0.67 16 23 C -0.06 -0.41 4.96 -104.63 -0.52 -0.93 16 24 C -0.12 -0.77 9.02 -39.59 -0.36 -1.13 16 25 C -0.12 -0.69 10.05 -39.58 -0.40 -1.09 16 26 C -0.12 -0.70 10.05 -39.58 -0.40 -1.10 16 27 C -0.12 -0.68 10.05 -39.58 -0.40 -1.08 16 28 C -0.11 -0.70 8.64 -39.58 -0.34 -1.05 16 29 C 0.14 1.51 5.99 -2.50 -0.01 1.49 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.39 5.04 6.86 -40.82 -0.28 4.76 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.62 6.24 -51.93 -0.32 0.30 16 40 H 0.09 0.76 7.52 -51.93 -0.39 0.37 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.10 0.91 7.50 -51.93 -0.39 0.52 16 43 H 0.06 0.47 6.25 -51.92 -0.32 0.15 16 44 H 0.13 0.70 6.04 -52.48 -0.32 0.38 16 45 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 46 H 0.12 0.48 8.06 -52.49 -0.42 0.05 16 47 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 48 H 0.12 0.66 7.98 -52.49 -0.42 0.24 16 49 H 0.09 1.07 7.24 -51.93 -0.38 0.69 16 50 H 0.07 0.66 7.65 -51.93 -0.40 0.27 16 LS Contribution 398.73 15.07 6.01 6.01 Total: -1.00 -35.16 398.73 -11.17 -46.33 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.81 Total: 0.59 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -3.86 Total: -6.05 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.18 Total: -46.62 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.32 Total: -16.89 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.16 -11.17 -46.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477823575.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.656 kcal (2) G-P(sol) polarization free energy of solvation -35.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds