Wall clock time and date at job start Wed Apr 1 2020 02:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00147 * 2 1 4 4 H 1.48496 * 109.47345 * 240.00214 * 3 2 1 5 5 H 1.48499 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47005 * 120.00218 * 3 2 1 7 7 C 1.37882 * 119.99585 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99451 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00332 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47258 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47394 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47377 * 180.02562 * 11 10 9 13 13 C 1.34781 * 120.00034 * 180.02562 * 12 11 10 14 14 O 1.21584 * 119.99832 * 359.97438 * 13 12 11 15 15 N 1.34769 * 119.99913 * 179.72502 * 13 12 11 16 16 C 1.48092 * 127.85088 * 359.95264 * 15 13 12 17 17 C 1.54624 * 104.59752 * 140.11498 * 16 15 13 18 18 H 1.09011 * 113.08849 * 147.49128 * 17 16 15 19 19 C 1.54391 * 108.93622 * 273.64468 * 17 16 15 20 20 O 1.44382 * 104.91444 * 87.02988 * 19 17 16 21 21 C 1.44377 * 105.25850 * 40.76580 * 20 19 17 22 22 C 1.54390 * 104.92855 * 319.24796 * 21 20 19 23 23 C 1.50700 * 112.71080 * 147.23633 * 22 21 20 24 24 C 1.38229 * 119.99859 * 9.63464 * 23 22 21 25 25 C 1.38233 * 120.00178 * 179.76806 * 24 23 22 26 26 C 1.38234 * 119.99684 * 0.50406 * 25 24 23 27 27 C 1.38237 * 120.00235 * 359.74721 * 26 25 24 28 28 C 1.38232 * 119.99735 * 189.90685 * 23 22 21 29 29 C 1.48087 * 127.85092 * 180.27169 * 15 13 12 30 30 H 0.96999 * 119.99844 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.47065 * 60.00249 * 9 7 2 32 32 H 1.08999 * 109.47128 * 300.00294 * 9 7 2 33 33 H 1.09003 * 109.46906 * 60.00119 * 10 9 7 34 34 H 1.09003 * 109.47493 * 300.00622 * 10 9 7 35 35 H 1.09003 * 109.46948 * 60.00205 * 11 10 9 36 36 H 1.09003 * 109.47357 * 300.00765 * 11 10 9 37 37 H 0.96993 * 119.99906 * 0.02562 * 12 11 10 38 38 H 1.08998 * 110.37907 * 258.98121 * 16 15 13 39 39 H 1.09004 * 110.38025 * 21.32964 * 16 15 13 40 40 H 1.09000 * 110.35342 * 328.16400 * 19 17 16 41 41 H 1.08999 * 110.34956 * 205.88526 * 19 17 16 42 42 H 1.09004 * 110.34700 * 200.38096 * 21 20 19 43 43 H 1.09008 * 110.43838 * 78.15456 * 21 20 19 44 44 H 1.08004 * 119.99975 * 0.02562 * 24 23 22 45 45 H 1.07998 * 120.00594 * 180.23373 * 25 24 23 46 46 H 1.08001 * 120.00138 * 179.72769 * 26 25 24 47 47 H 1.08000 * 120.00304 * 179.97438 * 27 26 25 48 48 H 1.07992 * 120.00617 * 0.02562 * 28 23 22 49 49 H 1.09002 * 110.37948 * 338.67995 * 29 15 13 50 50 H 1.09005 * 110.38482 * 101.03301 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 7 2.4322 -6.1007 0.0007 13 6 1.9829 -7.3714 0.0008 14 8 0.7875 -7.5935 0.0009 15 7 2.8586 -8.3957 -0.0042 16 6 4.3379 -8.3266 -0.0112 17 6 4.7854 -9.4561 0.9453 18 1 5.7324 -9.9115 0.6554 19 6 4.8032 -8.9116 2.3899 20 8 3.4575 -9.1043 2.8763 21 6 3.0582 -10.4020 2.3853 22 6 3.6033 -10.4663 0.9423 23 6 4.0072 -11.8597 0.5344 24 6 3.6878 -12.9359 1.3411 25 6 4.0541 -14.2145 0.9647 26 6 4.7488 -14.4159 -0.2133 27 6 5.0727 -13.3392 -1.0175 28 6 4.7019 -12.0610 -0.6436 29 6 2.5603 -9.8462 -0.0105 30 1 -0.4850 0.8401 0.0004 31 1 0.6240 -2.5568 -0.8903 32 1 0.6246 -2.5571 0.8896 33 1 2.8718 -3.6044 0.8895 34 1 2.8719 -3.6044 -0.8905 35 1 0.8533 -5.0451 -0.8897 36 1 0.8537 -5.0446 0.8903 37 1 3.3858 -5.9234 0.0011 38 1 4.7214 -8.5031 -1.0161 39 1 4.6744 -7.3584 0.3597 40 1 5.0593 -7.8521 2.3926 41 1 5.5105 -9.4749 2.9985 42 1 1.9717 -10.4890 2.3844 43 1 3.5005 -11.1915 2.9931 44 1 3.1485 -12.7781 2.2634 45 1 3.8013 -15.0558 1.5930 46 1 5.0388 -15.4144 -0.5053 47 1 5.6159 -13.4965 -1.9376 48 1 4.9556 -11.2198 -1.2714 49 1 1.5517 -10.0279 0.3607 50 1 2.6748 -10.2530 -1.0153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001477823575.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:24 Heat of formation + Delta-G solvation = -65.683897 kcal Electronic energy + Delta-G solvation = -29990.146759 eV Core-core repulsion = 25981.189101 eV Total energy + Delta-G solvation = -4008.957658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.34067 -40.57802 -39.46911 -37.27445 -36.79228 -35.21220 -34.06287 -32.86441 -32.19426 -31.64004 -30.00386 -28.58566 -27.15096 -26.59516 -24.85015 -23.97437 -23.35273 -22.36980 -22.10367 -21.02374 -20.55231 -19.18009 -18.52778 -18.40096 -17.26271 -17.23217 -16.63701 -16.58556 -16.45350 -16.19874 -15.85837 -15.63697 -15.39641 -15.31167 -14.85999 -14.48612 -14.27501 -14.26116 -14.08104 -14.02914 -13.73412 -13.63086 -13.48261 -12.95797 -12.70977 -12.68089 -12.53859 -12.44661 -12.38661 -12.16277 -11.98255 -11.79507 -11.67556 -11.63958 -11.59097 -11.32253 -11.16387 -10.80838 -10.54039 -10.25893 -9.77949 -9.67272 -9.48900 -8.18305 -6.30095 0.42000 0.53855 1.41865 1.45533 1.49726 1.53676 2.10009 2.42630 2.80264 2.89672 3.02574 3.15134 3.17114 3.46283 3.71360 3.73125 3.92040 4.07173 4.14591 4.17378 4.20598 4.21407 4.34137 4.41396 4.42902 4.47249 4.54516 4.60539 4.64083 4.68222 4.74478 4.76670 4.78258 4.83302 4.87417 4.94631 4.97392 5.07848 5.15813 5.19627 5.24364 5.45386 5.53538 5.59770 5.67653 5.68083 5.70763 5.84366 5.84902 6.01681 6.13495 6.22833 6.86421 6.95967 7.39196 7.52178 8.93651 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026513 B = 0.001875 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.812992 B =14927.803925 C =14995.775030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.024 3.976 10 C -0.098 4.098 11 C 0.151 3.849 12 N -0.727 5.727 13 C 0.724 3.276 14 O -0.642 6.642 15 N -0.634 5.634 16 C 0.102 3.898 17 C -0.113 4.113 18 H 0.140 0.860 19 C 0.043 3.957 20 O -0.396 6.396 21 C 0.052 3.948 22 C -0.051 4.051 23 C -0.067 4.067 24 C -0.128 4.128 25 C -0.124 4.124 26 C -0.127 4.127 27 C -0.123 4.123 28 C -0.115 4.115 29 C 0.140 3.860 30 H 0.263 0.737 31 H -0.007 1.007 32 H -0.009 1.009 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.042 0.958 37 H 0.408 0.592 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.129 0.871 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.135 0.865 49 H 0.061 0.939 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.303 -32.323 0.520 37.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.014 4.014 10 C -0.136 4.136 11 C 0.027 3.973 12 N -0.383 5.383 13 C 0.426 3.574 14 O -0.524 6.524 15 N -0.371 5.371 16 C -0.020 4.020 17 C -0.132 4.132 18 H 0.157 0.843 19 C -0.033 4.033 20 O -0.315 6.315 21 C -0.024 4.024 22 C -0.053 4.053 23 C -0.067 4.067 24 C -0.146 4.146 25 C -0.142 4.142 26 C -0.145 4.145 27 C -0.140 4.140 28 C -0.133 4.133 29 C 0.017 3.983 30 H 0.072 0.928 31 H 0.011 0.989 32 H 0.009 0.991 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.245 0.755 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.146 0.854 45 H 0.155 0.845 46 H 0.156 0.844 47 H 0.158 0.842 48 H 0.153 0.847 49 H 0.079 0.921 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 17.076 -32.089 0.655 36.355 hybrid contribution -0.039 1.005 0.039 1.006 sum 17.037 -31.084 0.694 35.454 Atomic orbital electron populations 1.70117 1.07980 1.27838 1.51579 1.26055 0.95772 1.03634 0.94778 0.85441 0.78152 0.77798 0.79278 1.18919 1.21209 1.19036 1.21641 0.93767 0.91896 1.50597 0.91408 1.18938 0.94441 0.92964 0.95061 1.21574 0.98426 0.91495 1.02106 1.21079 0.91328 0.84644 1.00289 1.44980 1.10696 1.03320 1.79279 1.15478 0.83867 0.80675 0.77401 1.90877 1.16183 1.84500 1.60832 1.47764 1.07065 1.04975 1.77312 1.22761 0.78345 0.99902 1.01023 1.23685 0.99135 0.94348 0.96008 0.84260 1.23687 0.84209 1.02484 0.92900 1.89187 1.31236 1.36032 1.75065 1.23653 1.00315 0.86034 0.92436 1.21482 0.95361 0.92765 0.95661 1.19159 0.99586 0.91966 0.95997 1.21281 1.00511 0.92643 1.00144 1.21396 0.98362 0.97088 0.97389 1.21501 0.98247 1.00007 0.94753 1.21432 0.99858 0.92379 1.00376 1.21162 0.98095 0.98138 0.95859 1.22215 0.98276 0.78341 0.99498 0.92841 0.98899 0.99097 0.91469 0.91160 0.93460 0.93938 0.75482 0.88210 0.89216 0.88525 0.90359 0.90329 0.89885 0.85358 0.84524 0.84384 0.84204 0.84698 0.92059 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.88 13.29 21.45 0.28 -57.59 16 2 C 0.00 -0.28 5.46 84.66 0.46 0.19 16 3 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.54 -30.54 9.11 25.60 0.23 -30.31 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.10 -3.92 5.27 30.59 0.16 -3.75 16 11 C 0.15 5.79 5.67 86.38 0.49 6.28 16 12 N -0.73 -22.63 5.53 -478.54 -2.65 -25.27 16 13 C 0.72 24.52 8.57 179.06 1.53 26.05 16 14 O -0.64 -28.25 16.61 -3.98 -0.07 -28.32 16 15 N -0.63 -15.10 3.15 -825.94 -2.60 -17.70 16 16 C 0.10 1.40 6.35 86.63 0.55 1.95 16 17 C -0.11 -1.27 3.57 -8.91 -0.03 -1.30 16 18 H 0.14 0.82 7.64 -2.38 -0.02 0.81 16 19 C 0.04 0.64 7.05 72.45 0.51 1.15 16 20 O -0.40 -9.25 11.49 -148.98 -1.71 -10.96 16 21 C 0.05 0.94 5.83 72.45 0.42 1.36 16 22 C -0.05 -0.75 0.89 -51.16 -0.05 -0.79 16 23 C -0.07 -0.81 4.96 -19.87 -0.10 -0.90 16 24 C -0.13 -1.51 9.02 22.27 0.20 -1.31 16 25 C -0.12 -1.25 10.05 22.27 0.22 -1.03 16 26 C -0.13 -1.15 10.05 22.27 0.22 -0.93 16 27 C -0.12 -1.10 10.05 22.27 0.22 -0.88 16 28 C -0.11 -1.15 8.64 22.27 0.19 -0.96 16 29 C 0.14 2.88 5.99 86.51 0.52 3.40 16 30 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 31 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 32 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 33 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.41 9.78 6.86 -92.71 -0.64 9.15 16 38 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 39 H 0.09 1.11 6.24 -2.39 -0.01 1.09 16 40 H 0.10 1.36 7.52 -2.39 -0.02 1.34 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.08 1.63 7.50 -2.39 -0.02 1.61 16 43 H 0.08 1.16 6.25 -2.38 -0.01 1.14 16 44 H 0.13 1.34 6.04 -2.91 -0.02 1.32 16 45 H 0.14 0.89 8.06 -2.91 -0.02 0.87 16 46 H 0.14 0.71 8.06 -2.91 -0.02 0.68 16 47 H 0.14 0.72 8.06 -2.91 -0.02 0.70 16 48 H 0.14 0.97 7.98 -2.91 -0.02 0.95 16 49 H 0.06 1.59 7.24 -2.39 -0.02 1.57 16 50 H 0.08 1.49 7.65 -2.38 -0.02 1.47 16 Total: -1.00 -78.98 398.73 1.51 -77.48 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.31 Total: 16.58 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 5.92 Total: -0.36 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -4.97 Total: -100.57 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -1.78 Total: -39.28 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -78.98 1.51 -77.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477823575.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.791 kcal (2) G-P(sol) polarization free energy of solvation -78.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds