Wall clock time and date at job start Wed Apr 1 2020 02:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00144 * 2 1 4 4 H 1.48496 * 109.47136 * 270.00472 * 3 2 1 5 5 H 1.48507 * 109.46707 * 29.99912 * 3 2 1 6 6 H 1.48493 * 109.47437 * 149.99922 * 3 2 1 7 7 C 1.38809 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00414 * 157.93328 * 7 2 1 9 9 N 1.36944 * 120.00044 * 337.93774 * 7 2 1 10 10 C 1.46495 * 119.99713 * 324.92680 * 9 7 2 11 11 C 1.53002 * 109.47386 * 269.99821 * 10 9 7 12 12 C 1.52994 * 109.47647 * 180.02562 * 11 10 9 13 13 N 1.46498 * 109.47261 * 180.02562 * 12 11 10 14 14 C 1.34777 * 119.99899 * 180.02562 * 13 12 11 15 15 O 1.21287 * 119.99804 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00056 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.47604 * 180.02562 * 16 14 13 18 18 H 1.08998 * 110.12974 * 54.29677 * 17 16 14 19 19 O 1.43949 * 110.15131 * 292.60621 * 17 16 14 20 20 C 1.44110 * 104.85714 * 269.29192 * 19 17 16 21 21 C 1.51085 * 105.97469 * 331.55247 * 20 19 17 22 22 C 1.37969 * 132.69073 * 197.69799 * 21 20 19 23 23 C 1.38293 * 119.91907 * 180.02562 * 22 21 20 24 24 C 1.38252 * 120.04314 * 0.02562 * 23 22 21 25 25 C 1.38291 * 120.04454 * 0.02562 * 24 23 22 26 26 C 1.37978 * 119.91759 * 359.95931 * 25 24 23 27 27 C 1.46500 * 120.00037 * 144.92730 * 9 7 2 28 28 C 1.52999 * 117.49778 * 3.23416 * 27 9 7 29 29 C 1.53004 * 117.49853 * 294.57651 * 27 9 7 30 30 H 0.96997 * 120.00116 * 356.06925 * 1 2 3 31 31 H 1.09001 * 109.46954 * 149.99939 * 10 9 7 32 32 H 1.09001 * 109.47763 * 30.00045 * 10 9 7 33 33 H 1.09004 * 109.46509 * 59.99971 * 11 10 9 34 34 H 1.09001 * 109.46852 * 300.00781 * 11 10 9 35 35 H 1.09001 * 109.46861 * 60.00015 * 12 11 10 36 36 H 1.09004 * 109.47107 * 300.00410 * 12 11 10 37 37 H 0.96996 * 119.99908 * 359.97438 * 13 12 11 38 38 H 1.09001 * 109.47091 * 60.00041 * 16 14 13 39 39 H 1.09004 * 109.47318 * 300.00167 * 16 14 13 40 40 H 1.08998 * 110.13960 * 212.42815 * 20 19 17 41 41 H 1.09004 * 110.21385 * 90.71681 * 20 19 17 42 42 H 1.07997 * 120.03680 * 0.02562 * 22 21 20 43 43 H 1.08004 * 119.97978 * 179.97438 * 23 22 21 44 44 H 1.08008 * 119.97874 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.04697 * 180.02562 * 25 24 23 46 46 H 1.09000 * 115.55183 * 148.90852 * 27 9 7 47 47 H 1.08997 * 117.50536 * 0.02562 * 28 27 9 48 48 H 1.09003 * 117.49452 * 145.02179 * 28 27 9 49 49 H 1.08991 * 117.49916 * 214.98222 * 29 27 9 50 50 H 1.09002 * 117.49410 * 0.02562 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0309 -1.2363 -0.3519 9 7 1.4007 -2.3449 0.4444 10 6 0.4456 -2.2814 1.5534 11 6 1.1886 -2.4676 2.8778 12 6 0.1911 -2.4019 4.0360 13 7 0.9027 -2.5796 5.3041 14 6 0.2222 -2.5587 6.4673 15 8 -0.9793 -2.3931 6.4641 16 6 0.9541 -2.7420 7.7718 17 6 -0.0436 -2.6775 8.9299 18 1 -0.8470 -3.3973 8.7735 19 8 -0.5842 -1.3483 9.0453 20 6 0.2994 -0.6680 9.9581 21 6 0.8667 -1.7373 10.8623 22 6 1.4959 -1.6878 12.0892 23 6 1.9190 -2.8567 12.6951 24 6 1.7122 -4.0734 12.0719 25 6 1.0824 -4.1231 10.8417 26 6 0.6600 -2.9569 10.2373 27 6 1.7039 -3.6308 -0.1885 28 6 2.7654 -3.6431 -1.2903 29 6 1.2873 -3.8149 -1.6492 30 1 -0.4850 0.8380 0.0576 31 1 -0.2968 -3.0712 1.4391 32 1 -0.0521 -1.3116 1.5493 33 1 1.9311 -1.6777 2.9920 34 1 1.6863 -3.4373 2.8819 35 1 -0.5510 -3.1920 3.9215 36 1 -0.3070 -1.4323 4.0319 37 1 1.8634 -2.7131 5.3065 38 1 1.6959 -1.9517 7.8864 39 1 1.4525 -3.7115 7.7757 40 1 -0.2571 0.0631 10.5444 41 1 1.1021 -0.1759 9.4089 42 1 1.6578 -0.7373 12.5757 43 1 2.4120 -2.8191 13.6553 44 1 2.0434 -4.9857 12.5459 45 1 0.9205 -5.0735 10.3551 46 1 1.6464 -4.5015 0.4647 47 1 3.2386 -2.6945 -1.5440 48 1 3.4061 -4.5220 -1.3621 49 1 0.9562 -4.8066 -1.9570 50 1 0.7881 -2.9790 -2.1393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479880367.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:34 Heat of formation + Delta-G solvation = -3.518452 kcal Electronic energy + Delta-G solvation = -29059.314214 eV Core-core repulsion = 25053.052252 eV Total energy + Delta-G solvation = -4006.261962 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.22950 -39.32789 -37.61501 -37.11714 -35.20689 -33.54741 -32.72528 -31.67093 -31.55013 -30.46776 -29.24434 -26.91696 -25.36004 -24.33860 -23.26484 -21.89570 -21.49377 -21.35768 -20.95887 -20.10860 -19.56600 -17.34313 -16.96160 -16.73322 -16.40050 -16.07233 -15.75421 -15.51986 -15.40246 -15.01500 -14.63390 -14.41392 -14.19800 -13.97243 -13.63207 -13.54927 -13.35903 -13.09211 -12.74786 -12.61429 -12.22022 -12.17686 -12.09246 -11.88287 -11.59297 -11.42798 -11.19231 -11.00116 -10.80339 -10.73519 -10.66211 -10.26900 -10.20838 -10.07444 -9.72876 -9.61769 -9.55936 -9.29720 -9.25697 -8.93899 -8.78350 -8.47550 -6.58296 -5.80049 -3.40629 0.82458 0.92627 2.80644 3.20343 3.32747 3.37065 3.41832 3.43532 3.71496 3.87572 4.27482 4.43360 4.51993 4.61603 4.62121 4.86782 4.92520 4.95894 5.03477 5.09704 5.16599 5.16926 5.18712 5.32245 5.34417 5.47721 5.59428 5.66135 5.69453 5.78858 5.90741 5.95722 6.02912 6.03857 6.05336 6.12780 6.27255 6.41516 6.43060 6.46878 6.49122 6.57094 6.65679 6.70278 6.81376 7.03183 7.11582 7.22262 7.67311 7.70291 7.78768 8.41317 8.46054 9.13657 9.77025 10.32641 11.15720 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015475 B = 0.001978 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.889457 B =14155.592159 C =14997.047931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.010 3.990 3 Si 0.895 3.105 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.258 4.258 8 H 0.065 0.935 9 N -0.551 5.551 10 C 0.149 3.851 11 C -0.144 4.144 12 C 0.122 3.878 13 N -0.728 5.728 14 C 0.510 3.490 15 O -0.531 6.531 16 C -0.157 4.157 17 C 0.139 3.861 18 H 0.113 0.887 19 O -0.333 6.333 20 C 0.081 3.919 21 C -0.126 4.126 22 C -0.096 4.096 23 C -0.115 4.115 24 C -0.117 4.117 25 C -0.091 4.091 26 C -0.124 4.124 27 C 0.121 3.879 28 C -0.197 4.197 29 C -0.223 4.223 30 H 0.255 0.745 31 H 0.028 0.972 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.398 0.602 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.127 0.873 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.109 -7.743 23.910 25.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.190 4.190 3 Si 0.724 3.276 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.388 4.388 8 H 0.083 0.917 9 N -0.268 5.268 10 C 0.022 3.978 11 C -0.185 4.185 12 C -0.002 4.002 13 N -0.380 5.380 14 C 0.296 3.704 15 O -0.407 6.407 16 C -0.197 4.197 17 C 0.080 3.920 18 H 0.130 0.870 19 O -0.250 6.250 20 C 0.004 3.996 21 C -0.126 4.126 22 C -0.114 4.114 23 C -0.133 4.133 24 C -0.135 4.135 25 C -0.109 4.109 26 C -0.125 4.125 27 C 0.011 3.989 28 C -0.235 4.235 29 C -0.264 4.264 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.120 0.880 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.231 0.769 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.145 0.855 46 H 0.104 0.896 47 H 0.115 0.885 48 H 0.092 0.908 49 H 0.087 0.913 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.885 -7.351 23.731 25.146 hybrid contribution 1.259 0.722 0.008 1.452 sum 5.145 -6.629 23.740 25.179 Atomic orbital electron populations 1.70032 1.05489 1.26110 1.50766 1.25130 0.94977 0.98737 1.00161 0.86443 0.79523 0.83809 0.77859 1.21258 1.21401 1.20352 1.19037 0.94364 0.85492 1.39901 0.91712 1.43404 1.49118 1.01372 1.32879 1.20862 0.90448 1.03334 0.83159 1.22428 0.98833 1.01158 0.96035 1.21434 0.95468 1.01739 0.81546 1.46171 1.11504 1.73812 1.06483 1.20336 0.88013 0.76964 0.85133 1.90737 1.14426 1.48200 1.87341 1.22127 0.99567 1.04944 0.93056 1.21016 0.95096 0.86704 0.89171 0.86973 1.89365 1.48432 1.22980 1.64249 1.21872 0.94026 0.93772 0.89939 1.21143 0.99659 0.95980 0.95828 1.20422 0.98377 0.98886 0.93728 1.21156 0.99810 0.92272 1.00059 1.21151 0.99059 0.98170 0.95138 1.20461 0.98086 0.97112 0.95209 1.21025 1.00404 0.94349 0.96673 1.21224 1.00313 0.90262 0.87052 1.23031 0.91932 1.01784 1.06776 1.23368 0.97332 1.00627 1.05037 0.93456 0.95380 0.87993 0.91617 0.93270 0.92022 0.91509 0.76896 0.88583 0.87857 0.88398 0.90531 0.85687 0.85481 0.85416 0.85537 0.89641 0.88521 0.90839 0.91260 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.82 11.33 55.49 0.63 -24.19 16 2 C 0.01 0.28 4.96 -17.43 -0.09 0.19 16 3 Si 0.89 21.14 29.61 -169.99 -5.03 16.10 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.26 -6.77 8.63 -15.06 -0.13 -6.90 16 8 H 0.07 1.70 6.55 -52.49 -0.34 1.36 16 9 N -0.55 -13.20 2.78 -165.66 -0.46 -13.66 16 10 C 0.15 3.32 5.34 -4.04 -0.02 3.29 16 11 C -0.14 -2.61 5.65 -26.73 -0.15 -2.76 16 12 C 0.12 2.03 5.67 -4.05 -0.02 2.01 16 13 N -0.73 -10.01 5.56 -60.30 -0.33 -10.35 16 14 C 0.51 7.35 7.74 -10.99 -0.09 7.26 16 15 O -0.53 -9.94 15.54 -5.08 -0.08 -10.01 16 16 C -0.16 -1.60 5.37 -27.89 -0.15 -1.75 16 17 C 0.14 1.57 2.93 -27.70 -0.08 1.49 16 18 H 0.11 1.34 7.95 -51.93 -0.41 0.93 16 19 O -0.33 -4.50 10.85 -45.86 -0.50 -5.00 16 20 C 0.08 0.79 7.39 36.19 0.27 1.06 16 21 C -0.13 -1.16 6.32 -104.40 -0.66 -1.82 16 22 C -0.10 -0.72 10.04 -39.66 -0.40 -1.12 16 23 C -0.11 -0.76 10.05 -39.56 -0.40 -1.16 16 24 C -0.12 -0.78 10.05 -39.56 -0.40 -1.18 16 25 C -0.09 -0.71 10.04 -39.66 -0.40 -1.11 16 26 C -0.12 -1.18 5.62 -104.40 -0.59 -1.77 16 27 C 0.12 2.54 6.56 -67.93 -0.45 2.09 16 28 C -0.20 -3.85 9.80 -26.69 -0.26 -4.11 16 29 C -0.22 -4.54 10.36 -26.69 -0.28 -4.81 16 30 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 31 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 32 H 0.10 2.61 5.36 -51.93 -0.28 2.33 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.40 4.38 8.47 -40.82 -0.35 4.03 16 38 H 0.10 0.88 7.97 -51.93 -0.41 0.47 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 44 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 45 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 47 H 0.10 2.06 6.37 -51.93 -0.33 1.73 16 48 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 50 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 410.35 15.07 6.18 6.18 Total: -1.00 -32.30 410.35 -11.90 -44.20 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -8.02 Total: 7.83 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -4.28 Total: -11.10 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.17 Total: -48.20 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.58 Total: -15.01 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.30 -11.90 -44.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479880367.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.678 kcal (2) G-P(sol) polarization free energy of solvation -32.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds