Wall clock time and date at job start Wed Apr 1 2020 02:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99590 * 2 1 4 4 H 1.48502 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47534 * 300.00193 * 3 2 1 6 6 H 1.48503 * 109.47061 * 60.00845 * 3 2 1 7 7 C 1.38810 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99966 * 201.17534 * 7 2 1 9 9 N 1.36942 * 119.99880 * 21.17428 * 7 2 1 10 10 C 1.46491 * 119.99735 * 36.91014 * 9 7 2 11 11 C 1.53006 * 109.47396 * 90.00060 * 10 9 7 12 12 C 1.52997 * 109.47270 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.46948 * 179.97438 * 12 11 10 14 14 C 1.34776 * 120.00158 * 179.97438 * 13 12 11 15 15 O 1.21278 * 119.99950 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00188 * 180.02562 * 14 13 12 17 17 C 1.53005 * 109.47208 * 180.02562 * 16 14 13 18 18 H 1.09000 * 110.13117 * 304.75954 * 17 16 14 19 19 O 1.43941 * 110.15300 * 66.45475 * 17 16 14 20 20 C 1.43944 * 104.95239 * 90.67735 * 19 17 16 21 21 C 1.51086 * 105.95370 * 28.44576 * 20 19 17 22 22 C 1.37966 * 132.68521 * 162.28402 * 21 20 19 23 23 C 1.38292 * 119.91417 * 180.02562 * 22 21 20 24 24 C 1.38263 * 120.04527 * 0.02562 * 23 22 21 25 25 C 1.38297 * 120.04201 * 359.97400 * 24 23 22 26 26 C 1.37963 * 119.91508 * 0.04532 * 25 24 23 27 27 C 1.46494 * 119.99821 * 216.91171 * 9 7 2 28 28 C 1.53000 * 117.50083 * 14.46914 * 27 9 7 29 29 C 1.53007 * 117.49946 * 305.81235 * 27 9 7 30 30 H 0.97000 * 120.00087 * 354.81807 * 1 2 3 31 31 H 1.09004 * 109.47773 * 329.99865 * 10 9 7 32 32 H 1.09003 * 109.47207 * 209.99627 * 10 9 7 33 33 H 1.09006 * 109.46493 * 59.99637 * 11 10 9 34 34 H 1.09001 * 109.47083 * 299.99783 * 11 10 9 35 35 H 1.09001 * 109.47153 * 300.00062 * 12 11 10 36 36 H 1.08994 * 109.47395 * 60.00075 * 12 11 10 37 37 H 0.97006 * 120.00029 * 0.02562 * 13 12 11 38 38 H 1.09001 * 109.47160 * 300.00286 * 16 14 13 39 39 H 1.08997 * 109.47478 * 60.00416 * 16 14 13 40 40 H 1.09003 * 110.15512 * 147.56309 * 20 19 17 41 41 H 1.08993 * 110.15569 * 269.32149 * 20 19 17 42 42 H 1.07991 * 120.04020 * 0.02562 * 22 21 20 43 43 H 1.08000 * 119.97745 * 179.97438 * 23 22 21 44 44 H 1.07995 * 119.97951 * 180.02562 * 24 23 22 45 45 H 1.07994 * 120.04396 * 179.97438 * 25 24 23 46 46 H 1.09004 * 115.55082 * 160.14440 * 27 9 7 47 47 H 1.09004 * 117.49851 * 0.02562 * 28 27 9 48 48 H 1.09002 * 117.49899 * 145.01829 * 28 27 9 49 49 H 1.08997 * 117.49956 * 214.98448 * 29 27 9 50 50 H 1.09000 * 117.49385 * 0.02562 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0356 -1.2337 0.3373 9 7 1.3950 -2.3478 -0.4294 10 6 0.4554 -2.2983 -1.5522 11 6 1.2139 -2.5201 -2.8623 12 6 0.2325 -2.4690 -4.0349 13 7 0.9589 -2.6807 -5.2893 14 6 0.2942 -2.6776 -6.4618 15 8 -0.9052 -2.4991 -6.4784 16 6 1.0414 -2.8960 -7.7521 17 6 0.0600 -2.8448 -8.9248 18 1 -0.7445 -3.5644 -8.7724 19 8 -0.4809 -1.5179 -9.0612 20 6 0.4125 -0.8440 -9.9666 21 6 0.9952 -1.9200 -10.8528 22 6 1.6411 -1.8801 -12.0713 23 6 2.0749 -3.0535 -12.6607 24 6 1.8610 -4.2652 -12.0300 25 6 1.2135 -4.3053 -10.8086 26 6 0.7805 -3.1347 -10.2208 27 6 1.6764 -3.6230 0.2346 28 6 2.3844 -3.5725 1.5900 29 6 3.1407 -4.0521 0.3485 30 1 -0.4850 0.8366 0.0759 31 1 -0.0323 -1.3237 -1.5753 32 1 -0.2966 -3.0781 -1.4314 33 1 1.7016 -3.4947 -2.8392 34 1 1.9659 -1.7403 -2.9833 35 1 -0.5192 -3.2490 -3.9138 36 1 -0.2555 -1.4946 -4.0581 37 1 1.9183 -2.8239 -5.2760 38 1 1.7929 -2.1158 -7.8734 39 1 1.5297 -3.8702 -7.7289 40 1 -0.1376 -0.1197 -10.5675 41 1 1.2059 -0.3455 -9.4098 42 1 1.8078 -0.9337 -12.5641 43 1 2.5802 -3.0235 -13.6147 44 1 2.2005 -5.1809 -12.4911 45 1 1.0461 -5.2517 -10.3162 46 1 0.9329 -4.4056 0.0840 47 1 2.6405 -2.5905 1.9878 48 1 2.1069 -4.3222 2.3310 49 1 3.3603 -5.1171 0.2732 50 1 3.8945 -3.3854 -0.0702 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479880371.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:37 Heat of formation + Delta-G solvation = -4.386277 kcal Electronic energy + Delta-G solvation = -29098.066973 eV Core-core repulsion = 25091.767379 eV Total energy + Delta-G solvation = -4006.299594 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.23308 -39.32261 -37.61787 -37.13974 -35.19768 -33.54344 -32.72514 -31.67037 -31.55505 -30.46992 -29.23976 -26.91259 -25.34360 -24.34517 -23.28041 -21.89427 -21.41760 -21.36615 -20.94729 -20.07674 -19.72066 -17.33848 -16.96493 -16.72742 -16.41011 -16.06874 -15.74998 -15.55308 -15.38155 -15.04579 -14.53486 -14.32167 -14.21278 -13.97795 -13.64405 -13.56215 -13.35459 -13.08464 -12.83260 -12.72462 -12.21081 -12.12179 -11.94347 -11.85805 -11.58247 -11.40917 -11.18936 -10.98681 -10.83211 -10.78156 -10.58859 -10.39286 -10.25391 -10.11981 -9.86975 -9.67141 -9.50060 -9.29146 -9.24660 -8.93642 -8.77665 -8.46520 -6.50189 -5.85081 -3.41279 0.82705 0.92919 2.81307 3.20621 3.30768 3.37244 3.40469 3.42129 3.71884 3.88122 4.27995 4.39763 4.52296 4.62007 4.62394 4.86989 4.94492 4.96309 5.03962 5.09964 5.15812 5.17215 5.17796 5.32361 5.34837 5.48123 5.59633 5.66500 5.70334 5.76589 5.90815 5.95991 6.03235 6.03641 6.05556 6.13820 6.24891 6.40410 6.46459 6.47403 6.49047 6.58061 6.61180 6.71549 6.81632 6.96482 7.11334 7.17510 7.64222 7.70897 7.79725 8.42008 8.47878 9.13162 9.75808 10.32335 11.15452 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015000 B = 0.002006 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.207103 B =13957.116559 C =14785.679541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.016 3.984 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.288 1.288 7 C -0.262 4.262 8 H 0.062 0.938 9 N -0.549 5.549 10 C 0.151 3.849 11 C -0.144 4.144 12 C 0.122 3.878 13 N -0.728 5.728 14 C 0.510 3.490 15 O -0.531 6.531 16 C -0.157 4.157 17 C 0.139 3.861 18 H 0.112 0.888 19 O -0.332 6.332 20 C 0.081 3.919 21 C -0.126 4.126 22 C -0.096 4.096 23 C -0.115 4.115 24 C -0.117 4.117 25 C -0.091 4.091 26 C -0.124 4.124 27 C 0.128 3.872 28 C -0.198 4.198 29 C -0.229 4.229 30 H 0.257 0.743 31 H 0.101 0.899 32 H 0.028 0.972 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.398 0.602 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.127 0.873 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.073 0.927 49 H 0.071 0.929 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.072 -8.073 -23.480 25.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.185 4.185 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.215 1.215 7 C -0.392 4.392 8 H 0.080 0.920 9 N -0.265 5.265 10 C 0.024 3.976 11 C -0.185 4.185 12 C -0.002 4.002 13 N -0.380 5.380 14 C 0.296 3.704 15 O -0.407 6.407 16 C -0.197 4.197 17 C 0.080 3.920 18 H 0.130 0.870 19 O -0.250 6.250 20 C 0.004 3.996 21 C -0.126 4.126 22 C -0.114 4.114 23 C -0.133 4.133 24 C -0.135 4.135 25 C -0.109 4.109 26 C -0.125 4.125 27 C 0.018 3.982 28 C -0.237 4.237 29 C -0.269 4.269 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.231 0.769 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.094 0.906 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.145 0.855 46 H 0.105 0.895 47 H 0.116 0.884 48 H 0.091 0.909 49 H 0.090 0.910 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.821 -7.655 -23.422 24.935 hybrid contribution 1.377 0.705 0.002 1.547 sum 5.198 -6.950 -23.420 24.976 Atomic orbital electron populations 1.69889 1.05566 1.26118 1.51201 1.25216 0.95093 0.98713 0.99496 0.86308 0.79681 0.83825 0.77482 1.20085 1.21278 1.21522 1.18953 0.94405 0.84852 1.40953 0.91992 1.43395 1.49943 1.01899 1.31256 1.20860 0.90419 1.03065 0.83240 1.22441 0.98961 1.01253 0.95799 1.21436 0.95286 1.01561 0.81903 1.46173 1.11745 1.73425 1.06624 1.20329 0.88075 0.77076 0.84965 1.90735 1.14568 1.48202 1.87167 1.22126 0.99565 1.04892 0.93114 1.21018 0.95053 0.86690 0.89198 0.87001 1.89330 1.47549 1.23420 1.64695 1.21849 0.93746 0.93761 0.90232 1.21153 0.99582 0.95998 0.95884 1.20422 0.98282 0.98842 0.93875 1.21158 0.99805 0.92273 1.00059 1.21153 0.98997 0.98214 0.95160 1.20458 0.97988 0.97054 0.95362 1.21025 1.00354 0.94349 0.96734 1.21132 0.91272 0.90706 0.95111 1.23077 1.07062 1.02047 0.91556 1.23367 0.99971 0.98962 1.04648 0.93240 0.88182 0.95399 0.93065 0.91724 0.92031 0.91544 0.76894 0.88609 0.87846 0.88395 0.90569 0.85689 0.85485 0.85419 0.85536 0.89502 0.88367 0.90888 0.91050 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.89 11.40 55.49 0.63 -24.26 16 2 C 0.02 0.42 4.97 -17.43 -0.09 0.33 16 3 Si 0.90 21.15 29.61 -169.99 -5.03 16.12 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.26 -6.88 8.07 -15.06 -0.12 -7.00 16 8 H 0.06 1.65 7.16 -52.49 -0.38 1.27 16 9 N -0.55 -13.16 2.79 -165.66 -0.46 -13.63 16 10 C 0.15 3.36 5.33 -4.04 -0.02 3.34 16 11 C -0.14 -2.63 5.65 -26.73 -0.15 -2.78 16 12 C 0.12 2.04 5.67 -4.04 -0.02 2.02 16 13 N -0.73 -10.10 5.56 -60.30 -0.33 -10.43 16 14 C 0.51 7.39 7.73 -10.99 -0.08 7.30 16 15 O -0.53 -9.96 15.52 -6.37 -0.10 -10.06 16 16 C -0.16 -1.61 5.38 -27.88 -0.15 -1.76 16 17 C 0.14 1.58 2.93 -27.69 -0.08 1.49 16 18 H 0.11 1.34 7.98 -51.93 -0.41 0.92 16 19 O -0.33 -4.52 10.78 -47.16 -0.51 -5.03 16 20 C 0.08 0.80 7.39 36.19 0.27 1.07 16 21 C -0.13 -1.17 6.32 -104.40 -0.66 -1.83 16 22 C -0.10 -0.73 10.04 -39.66 -0.40 -1.13 16 23 C -0.11 -0.76 10.05 -39.55 -0.40 -1.16 16 24 C -0.12 -0.79 10.05 -39.55 -0.40 -1.19 16 25 C -0.09 -0.71 10.04 -39.66 -0.40 -1.11 16 26 C -0.12 -1.19 5.63 -104.40 -0.59 -1.78 16 27 C 0.13 2.69 6.61 -67.93 -0.45 2.24 16 28 C -0.20 -3.96 9.81 -26.70 -0.26 -4.22 16 29 C -0.23 -4.30 10.08 -26.69 -0.27 -4.57 16 30 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 31 H 0.10 2.56 5.46 -51.93 -0.28 2.28 16 32 H 0.03 0.59 8.04 -51.93 -0.42 0.18 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.40 4.44 8.47 -40.82 -0.35 4.09 16 38 H 0.10 0.89 7.97 -51.93 -0.41 0.48 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 44 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 45 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 47 H 0.10 2.17 6.95 -51.93 -0.36 1.81 16 48 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 49 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 50 H 0.08 1.68 7.97 -51.93 -0.41 1.27 16 LS Contribution 410.67 15.07 6.19 6.19 Total: -1.00 -32.22 410.67 -11.97 -44.18 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -8.08 Total: 7.66 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -4.27 Total: -10.74 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.16 Total: -48.32 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.61 Total: -15.09 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.22 -11.97 -44.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479880371.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.796 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds