Wall clock time and date at job start Wed Apr 1 2020 02:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99590 * 2 1 4 4 H 1.48502 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47534 * 300.00193 * 3 2 1 6 6 H 1.48503 * 109.47061 * 60.00845 * 3 2 1 7 7 C 1.38810 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99966 * 201.17534 * 7 2 1 9 9 N 1.36942 * 119.99880 * 21.17428 * 7 2 1 10 10 C 1.46491 * 119.99735 * 36.91014 * 9 7 2 11 11 C 1.53006 * 109.47396 * 90.00060 * 10 9 7 12 12 C 1.52997 * 109.47270 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.46948 * 179.97438 * 12 11 10 14 14 C 1.34776 * 120.00158 * 179.97438 * 13 12 11 15 15 O 1.21278 * 119.99950 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00188 * 180.02562 * 14 13 12 17 17 C 1.53005 * 109.47208 * 180.02562 * 16 14 13 18 18 H 1.09000 * 110.13117 * 304.75954 * 17 16 14 19 19 O 1.43941 * 110.15300 * 66.45475 * 17 16 14 20 20 C 1.43944 * 104.95239 * 90.67735 * 19 17 16 21 21 C 1.51086 * 105.95370 * 28.44576 * 20 19 17 22 22 C 1.37966 * 132.68521 * 162.28402 * 21 20 19 23 23 C 1.38292 * 119.91417 * 180.02562 * 22 21 20 24 24 C 1.38263 * 120.04527 * 0.02562 * 23 22 21 25 25 C 1.38297 * 120.04201 * 359.97400 * 24 23 22 26 26 C 1.37963 * 119.91508 * 0.04532 * 25 24 23 27 27 C 1.46494 * 119.99821 * 216.91171 * 9 7 2 28 28 C 1.53000 * 117.50083 * 14.46914 * 27 9 7 29 29 C 1.53007 * 117.49946 * 305.81235 * 27 9 7 30 30 H 0.97000 * 120.00087 * 354.81807 * 1 2 3 31 31 H 1.09004 * 109.47773 * 329.99865 * 10 9 7 32 32 H 1.09003 * 109.47207 * 209.99627 * 10 9 7 33 33 H 1.09006 * 109.46493 * 59.99637 * 11 10 9 34 34 H 1.09001 * 109.47083 * 299.99783 * 11 10 9 35 35 H 1.09001 * 109.47153 * 300.00062 * 12 11 10 36 36 H 1.08994 * 109.47395 * 60.00075 * 12 11 10 37 37 H 0.97006 * 120.00029 * 0.02562 * 13 12 11 38 38 H 1.09001 * 109.47160 * 300.00286 * 16 14 13 39 39 H 1.08997 * 109.47478 * 60.00416 * 16 14 13 40 40 H 1.09003 * 110.15512 * 147.56309 * 20 19 17 41 41 H 1.08993 * 110.15569 * 269.32149 * 20 19 17 42 42 H 1.07991 * 120.04020 * 0.02562 * 22 21 20 43 43 H 1.08000 * 119.97745 * 179.97438 * 23 22 21 44 44 H 1.07995 * 119.97951 * 180.02562 * 24 23 22 45 45 H 1.07994 * 120.04396 * 179.97438 * 25 24 23 46 46 H 1.09004 * 115.55082 * 160.14440 * 27 9 7 47 47 H 1.09004 * 117.49851 * 0.02562 * 28 27 9 48 48 H 1.09002 * 117.49899 * 145.01829 * 28 27 9 49 49 H 1.08997 * 117.49956 * 214.98448 * 29 27 9 50 50 H 1.09000 * 117.49385 * 0.02562 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0356 -1.2337 0.3373 9 7 1.3950 -2.3478 -0.4294 10 6 0.4554 -2.2983 -1.5522 11 6 1.2139 -2.5201 -2.8623 12 6 0.2325 -2.4690 -4.0349 13 7 0.9589 -2.6807 -5.2893 14 6 0.2942 -2.6776 -6.4618 15 8 -0.9052 -2.4991 -6.4784 16 6 1.0414 -2.8960 -7.7521 17 6 0.0600 -2.8448 -8.9248 18 1 -0.7445 -3.5644 -8.7724 19 8 -0.4809 -1.5179 -9.0612 20 6 0.4125 -0.8440 -9.9666 21 6 0.9952 -1.9200 -10.8528 22 6 1.6411 -1.8801 -12.0713 23 6 2.0749 -3.0535 -12.6607 24 6 1.8610 -4.2652 -12.0300 25 6 1.2135 -4.3053 -10.8086 26 6 0.7805 -3.1347 -10.2208 27 6 1.6764 -3.6230 0.2346 28 6 2.3844 -3.5725 1.5900 29 6 3.1407 -4.0521 0.3485 30 1 -0.4850 0.8366 0.0759 31 1 -0.0323 -1.3237 -1.5753 32 1 -0.2966 -3.0781 -1.4314 33 1 1.7016 -3.4947 -2.8392 34 1 1.9659 -1.7403 -2.9833 35 1 -0.5192 -3.2490 -3.9138 36 1 -0.2555 -1.4946 -4.0581 37 1 1.9183 -2.8239 -5.2760 38 1 1.7929 -2.1158 -7.8734 39 1 1.5297 -3.8702 -7.7289 40 1 -0.1376 -0.1197 -10.5675 41 1 1.2059 -0.3455 -9.4098 42 1 1.8078 -0.9337 -12.5641 43 1 2.5802 -3.0235 -13.6147 44 1 2.2005 -5.1809 -12.4911 45 1 1.0461 -5.2517 -10.3162 46 1 0.9329 -4.4056 0.0840 47 1 2.6405 -2.5905 1.9878 48 1 2.1069 -4.3222 2.3310 49 1 3.3603 -5.1171 0.2732 50 1 3.8945 -3.3854 -0.0702 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479880371.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:36 Heat of formation + Delta-G solvation = -22.441148 kcal Electronic energy + Delta-G solvation = -29098.849891 eV Core-core repulsion = 25091.767379 eV Total energy + Delta-G solvation = -4007.082512 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.98366 -40.46961 -38.86904 -38.30553 -36.62370 -35.23778 -33.66772 -33.16275 -32.27376 -31.51398 -30.62085 -27.83461 -26.93989 -25.47836 -24.55149 -22.92921 -22.53337 -22.45787 -22.18264 -21.63339 -21.10109 -18.32217 -18.23314 -17.78282 -17.46716 -17.33548 -17.01192 -16.62569 -16.53257 -16.23519 -15.98461 -15.79452 -15.23499 -15.00940 -14.79275 -14.65581 -14.44494 -14.06748 -13.87101 -13.68648 -13.58845 -13.47444 -13.21230 -12.88820 -12.86634 -12.74085 -12.63229 -12.36045 -12.24126 -12.17598 -12.14770 -11.97212 -11.78020 -11.58343 -11.25234 -11.06784 -10.95192 -10.84846 -10.42981 -10.07536 -9.84973 -9.56522 -8.42968 -7.83910 -5.44702 0.24971 0.38510 1.41251 1.45725 1.54459 1.66385 2.17525 2.46406 2.73018 2.93661 3.15189 3.20135 3.45743 3.50170 3.56116 3.70036 3.96338 4.04852 4.16648 4.19763 4.20570 4.31208 4.33327 4.38117 4.42684 4.48160 4.53901 4.55622 4.58824 4.64728 4.67918 4.76281 4.82975 4.91740 4.97322 4.99217 5.06649 5.08934 5.13693 5.35749 5.40858 5.44133 5.47699 5.48412 5.53997 5.57341 5.67427 5.79557 5.83827 5.99792 6.46864 6.58900 7.15239 7.29108 7.86156 8.36279 9.11527 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015000 B = 0.002006 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.207103 B =13957.116559 C =14785.679541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.034 4.034 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.257 4.257 8 H 0.056 0.944 9 N -0.567 5.567 10 C 0.150 3.850 11 C -0.119 4.119 12 C 0.135 3.865 13 N -0.718 5.718 14 C 0.508 3.492 15 O -0.579 6.579 16 C -0.143 4.143 17 C 0.135 3.865 18 H 0.095 0.905 19 O -0.371 6.371 20 C 0.076 3.924 21 C -0.141 4.141 22 C -0.102 4.102 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.097 4.097 26 C -0.139 4.139 27 C 0.100 3.900 28 C -0.201 4.201 29 C -0.199 4.199 30 H 0.252 0.748 31 H 0.064 0.936 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.038 0.962 37 H 0.414 0.586 38 H 0.110 0.890 39 H 0.137 0.863 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.143 0.857 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.142 0.858 46 H 0.104 0.896 47 H 0.070 0.930 48 H 0.100 0.900 49 H 0.107 0.893 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.676 -10.023 -25.367 28.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.232 4.232 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.387 4.387 8 H 0.073 0.927 9 N -0.284 5.284 10 C 0.023 3.977 11 C -0.160 4.160 12 C 0.010 3.990 13 N -0.370 5.370 14 C 0.295 3.705 15 O -0.458 6.458 16 C -0.183 4.183 17 C 0.077 3.923 18 H 0.113 0.887 19 O -0.290 6.290 20 C 0.000 4.000 21 C -0.141 4.141 22 C -0.120 4.120 23 C -0.132 4.132 24 C -0.136 4.136 25 C -0.115 4.115 26 C -0.139 4.139 27 C -0.008 4.008 28 C -0.240 4.240 29 C -0.240 4.240 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.251 0.749 38 H 0.128 0.872 39 H 0.155 0.845 40 H 0.124 0.876 41 H 0.100 0.900 42 H 0.160 0.840 43 H 0.171 0.829 44 H 0.172 0.828 45 H 0.160 0.840 46 H 0.122 0.878 47 H 0.088 0.912 48 H 0.118 0.882 49 H 0.125 0.875 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.487 -9.635 -25.313 27.851 hybrid contribution 0.570 1.229 0.572 1.470 sum 7.056 -8.407 -24.741 27.066 Atomic orbital electron populations 1.70025 1.06793 1.26242 1.53129 1.25840 0.95700 1.01393 1.00244 0.85425 0.78999 0.80493 0.76878 1.19111 1.21707 1.21803 1.19058 0.94109 0.85923 1.39616 0.92669 1.43560 1.50106 1.02436 1.32258 1.20763 0.90796 1.01240 0.84891 1.22077 0.98124 1.01638 0.94113 1.21075 0.95004 1.00033 0.82913 1.46004 1.12477 1.72986 1.05575 1.21080 0.87681 0.75621 0.86088 1.90717 1.16932 1.50316 1.87869 1.22106 0.99032 1.07135 0.89987 1.21013 0.94934 0.85629 0.90703 0.88711 1.89278 1.49223 1.24747 1.65706 1.21974 0.93645 0.94148 0.90243 1.21184 1.00689 0.95493 0.96751 1.20715 0.97789 1.00270 0.93246 1.21546 0.99011 0.91807 1.00865 1.21523 0.98044 0.99421 0.94566 1.20731 0.97770 0.97042 0.95912 1.20924 1.01487 0.95321 0.96189 1.21417 0.93270 0.90031 0.96085 1.23085 1.07215 1.01614 0.92088 1.23309 0.97574 1.00598 1.02514 0.93823 0.91774 0.95022 0.91123 0.93043 0.92212 0.94325 0.74944 0.87170 0.84520 0.87649 0.90034 0.83951 0.82858 0.82841 0.84013 0.87820 0.91167 0.88181 0.87524 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.35 11.40 21.65 0.25 -53.11 16 2 C -0.03 -1.88 4.97 84.86 0.42 -1.46 16 3 Si 0.95 44.35 29.61 68.60 2.03 46.38 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.26 -13.61 8.07 84.03 0.68 -12.93 16 8 H 0.06 2.96 7.16 -2.91 -0.02 2.94 16 9 N -0.57 -27.21 2.79 -678.03 -1.89 -29.10 16 10 C 0.15 6.79 5.33 86.38 0.46 7.25 16 11 C -0.12 -4.32 5.65 30.60 0.17 -4.15 16 12 C 0.13 4.58 5.67 86.38 0.49 5.07 16 13 N -0.72 -19.42 5.56 -463.08 -2.57 -22.00 16 14 C 0.51 14.67 7.73 87.66 0.68 15.34 16 15 O -0.58 -22.55 15.52 8.38 0.13 -22.42 16 16 C -0.14 -2.78 5.38 29.85 0.16 -2.62 16 17 C 0.14 3.09 2.93 29.97 0.09 3.18 16 18 H 0.10 2.38 7.98 -2.39 -0.02 2.36 16 19 O -0.37 -10.49 10.78 -137.58 -1.48 -11.97 16 20 C 0.08 1.52 7.39 71.36 0.53 2.05 16 21 C -0.14 -2.49 6.32 -19.72 -0.12 -2.61 16 22 C -0.10 -1.33 10.04 22.22 0.22 -1.11 16 23 C -0.11 -1.17 10.05 22.29 0.22 -0.94 16 24 C -0.12 -1.22 10.05 22.29 0.22 -0.99 16 25 C -0.10 -1.30 10.04 22.22 0.22 -1.08 16 26 C -0.14 -2.52 5.63 -19.72 -0.11 -2.63 16 27 C 0.10 4.08 6.61 44.99 0.30 4.38 16 28 C -0.20 -7.70 9.81 30.62 0.30 -7.40 16 29 C -0.20 -6.96 10.08 30.62 0.31 -6.65 16 30 H 0.25 14.28 8.32 -92.71 -0.77 13.51 16 31 H 0.06 3.43 5.46 -2.39 -0.01 3.42 16 32 H 0.03 1.37 8.04 -2.39 -0.02 1.35 16 33 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.41 8.47 8.47 -92.70 -0.79 7.68 16 38 H 0.11 1.87 7.97 -2.39 -0.02 1.85 16 39 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.14 1.25 8.06 -2.92 -0.02 1.22 16 43 H 0.15 0.71 8.06 -2.91 -0.02 0.69 16 44 H 0.15 0.75 8.06 -2.91 -0.02 0.72 16 45 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 46 H 0.10 3.83 8.10 -2.39 -0.02 3.81 16 47 H 0.07 3.09 6.95 -2.38 -0.02 3.07 16 48 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 49 H 0.11 3.00 8.14 -2.39 -0.02 2.99 16 50 H 0.07 2.66 7.97 -2.39 -0.02 2.64 16 Total: -1.00 -72.68 410.67 1.85 -70.83 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 0.15 Total: 28.71 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 5.24 Total: -7.33 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -4.22 Total: -104.21 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.35 Total: -34.40 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -72.68 1.85 -70.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479880371.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.391 kcal (2) G-P(sol) polarization free energy of solvation -72.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds