Wall clock time and date at job start Wed Apr 1 2020 03:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99784 * 2 1 4 4 H 1.48494 * 109.47157 * 270.00088 * 3 2 1 5 5 H 1.48500 * 109.46551 * 150.00254 * 3 2 1 6 6 H 1.48500 * 109.47049 * 30.00401 * 3 2 1 7 7 C 1.38812 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00043 * 359.97438 * 7 2 1 9 9 N 1.36932 * 119.99681 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00187 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47758 * 179.97438 * 10 9 7 12 12 H 1.09007 * 110.88280 * 51.12028 * 11 10 9 13 13 C 1.55154 * 111.00373 * 287.19677 * 11 10 9 14 14 C 1.54321 * 102.94186 * 206.41960 * 13 11 10 15 15 N 1.47025 * 107.27080 * 22.19318 * 14 13 11 16 16 C 1.34780 * 125.64726 * 181.09395 * 15 14 13 17 17 O 1.21281 * 119.99823 * 174.95729 * 16 15 14 18 18 C 1.50691 * 120.00129 * 354.96237 * 16 15 14 19 19 C 1.50698 * 109.87193 * 277.06972 * 18 16 15 20 20 C 1.38238 * 119.99776 * 301.71095 * 19 18 16 21 21 C 1.38235 * 119.99648 * 179.74182 * 20 19 18 22 22 C 1.38236 * 120.00181 * 0.54780 * 21 20 19 23 23 C 1.38233 * 119.99681 * 359.70522 * 22 21 20 24 24 C 1.38231 * 120.00437 * 0.02562 * 23 22 21 25 25 C 1.54105 * 109.88302 * 155.90843 * 18 16 15 26 26 C 1.54806 * 104.19076 * 242.60703 * 25 18 16 27 27 C 1.54998 * 102.09252 * 20.87542 * 26 25 18 28 28 O 1.43750 * 109.88219 * 38.07636 * 18 16 15 29 29 C 1.47419 * 108.70477 * 1.05742 * 15 14 13 30 30 H 0.97001 * 120.00401 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00658 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46894 * 299.99562 * 10 9 7 33 33 H 1.08997 * 109.47000 * 59.99098 * 10 9 7 34 34 H 1.08996 * 110.72026 * 324.78650 * 13 11 10 35 35 H 1.09000 * 110.71967 * 88.05684 * 13 11 10 36 36 H 1.09006 * 109.88431 * 262.77952 * 14 13 11 37 37 H 1.09004 * 109.88359 * 141.60758 * 14 13 11 38 38 H 1.08001 * 120.00323 * 359.97438 * 20 19 18 39 39 H 1.08006 * 119.99633 * 180.27114 * 21 20 19 40 40 H 1.07997 * 119.99845 * 179.72427 * 22 21 20 41 41 H 1.08007 * 119.99289 * 179.97438 * 23 22 21 42 42 H 1.07993 * 120.00028 * 179.97438 * 24 23 22 43 43 H 1.09001 * 110.48108 * 1.27873 * 25 18 16 44 44 H 1.08998 * 110.48726 * 123.92367 * 25 18 16 45 45 H 1.08998 * 110.90703 * 262.68018 * 26 25 18 46 46 H 1.08995 * 110.91165 * 139.07588 * 26 25 18 47 47 H 1.08999 * 110.61798 * 204.47501 * 27 26 25 48 48 H 1.09006 * 110.75225 * 81.54590 * 27 26 25 49 49 H 1.08997 * 110.37069 * 217.03633 * 29 15 14 50 50 H 1.08997 * 110.36961 * 94.70636 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 3.5477 1.4401 0.7000 6 1 1.4476 2.6527 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 6 5.6163 -2.1913 0.0000 12 1 5.8816 -1.4918 0.7928 13 6 6.0849 -1.6686 -1.3837 14 6 7.5684 -2.0914 -1.4286 15 7 7.7341 -3.2038 -0.4816 16 6 8.8910 -3.8410 -0.2131 17 8 8.9300 -4.6868 0.6552 18 6 10.1360 -3.5024 -0.9917 19 6 10.1456 -4.2570 -2.2961 20 6 10.0893 -5.6382 -2.2959 21 6 10.0927 -6.3302 -3.4926 22 6 10.1637 -5.6415 -4.6891 23 6 10.2253 -4.2605 -4.6890 24 6 10.2163 -3.5683 -3.4925 25 6 11.3855 -3.8631 -0.1649 26 6 12.0979 -2.5069 0.0576 27 6 10.9473 -1.4941 -0.1723 28 8 10.1849 -2.0882 -1.2448 29 6 6.4255 -3.5062 0.1261 30 1 -0.4851 0.8400 0.0004 31 1 3.8646 -0.3621 0.0004 32 1 3.8485 -3.0425 0.8898 33 1 3.8490 -3.0422 -0.8901 34 1 5.5233 -2.1461 -2.1866 35 1 5.9911 -0.5841 -1.4382 36 1 8.2014 -1.2549 -1.1322 37 1 7.8303 -2.4189 -2.4347 38 1 10.0390 -6.1766 -1.3610 39 1 10.0444 -7.4092 -3.4926 40 1 10.1709 -6.1823 -5.6238 41 1 10.2812 -3.7225 -5.6238 42 1 10.2647 -2.4894 -3.4925 43 1 11.0972 -4.3036 0.7895 44 1 12.0280 -4.5448 -0.7222 45 1 12.8950 -2.3620 -0.6717 46 1 12.4843 -2.4325 1.0740 47 1 11.3438 -0.5248 -0.4743 48 1 10.3355 -1.3947 0.7244 49 1 6.5478 -3.7773 1.1748 50 1 5.9306 -4.3098 -0.4191 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480677052.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:56 Heat of formation + Delta-G solvation = -30.704127 kcal Electronic energy + Delta-G solvation = -31078.718453 eV Core-core repulsion = 27071.277631 eV Total energy + Delta-G solvation = -4007.440821 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.37462 -39.26988 -38.64550 -37.59591 -34.87416 -32.83087 -32.61399 -31.91951 -31.08747 -30.53145 -29.22968 -28.47865 -25.94362 -24.27406 -23.11022 -22.96464 -22.11814 -21.94345 -21.24417 -20.22416 -19.35069 -17.87657 -17.59817 -17.26186 -16.69568 -16.21158 -15.93155 -15.50423 -15.05180 -14.89389 -14.70558 -14.32933 -14.09134 -13.70957 -13.62398 -13.55129 -13.42957 -13.21545 -13.13655 -12.90632 -12.60943 -12.45685 -12.24632 -12.18342 -11.74329 -11.72288 -11.56654 -11.45286 -11.23768 -11.12068 -10.97152 -10.87682 -10.66015 -10.52679 -10.46837 -10.10444 -9.72372 -9.59547 -9.17311 -8.94891 -8.90451 -8.63198 -7.24111 -5.77171 -3.12905 0.99637 1.14900 2.39066 2.85091 3.24556 3.36390 3.38576 3.44448 3.52186 4.09547 4.24799 4.29657 4.57902 4.58348 4.63888 4.69444 4.74443 4.75755 4.78384 4.89083 4.98063 5.02817 5.22205 5.25998 5.29573 5.33957 5.38309 5.43874 5.45859 5.54006 5.57732 5.64508 5.68852 5.71356 5.77401 5.79348 5.85027 5.94343 5.98913 6.07740 6.14651 6.21440 6.23114 6.26557 6.34649 6.49663 6.63282 6.70428 6.73696 7.44854 7.97853 7.99362 8.41746 9.20610 9.92780 10.12672 11.41308 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014705 B = 0.002750 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.710706 B =10180.215210 C =10692.288141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.754 5.754 10 C 0.169 3.831 11 C -0.109 4.109 12 H 0.083 0.917 13 C -0.127 4.127 14 C 0.107 3.893 15 N -0.601 5.601 16 C 0.525 3.475 17 O -0.539 6.539 18 C 0.139 3.861 19 C -0.082 4.082 20 C -0.106 4.106 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.123 4.123 24 C -0.091 4.091 25 C -0.135 4.135 26 C -0.152 4.152 27 C 0.041 3.959 28 O -0.351 6.351 29 C 0.111 3.889 30 H 0.259 0.741 31 H 0.361 0.639 32 H 0.030 0.970 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.133 0.867 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.064 0.936 49 H 0.079 0.921 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.322 -7.844 -6.571 31.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.204 1.204 6 H -0.217 1.217 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.400 5.400 10 C 0.042 3.958 11 C -0.129 4.129 12 H 0.102 0.898 13 C -0.165 4.165 14 C -0.016 4.016 15 N -0.333 5.333 16 C 0.311 3.689 17 O -0.417 6.417 18 C 0.096 3.904 19 C -0.083 4.083 20 C -0.124 4.124 21 C -0.137 4.137 22 C -0.134 4.134 23 C -0.141 4.141 24 C -0.109 4.109 25 C -0.173 4.173 26 C -0.190 4.190 27 C -0.036 4.036 28 O -0.269 6.269 29 C -0.012 4.012 30 H 0.070 0.930 31 H 0.193 0.807 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.151 0.849 43 H 0.117 0.883 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.103 0.897 47 H 0.119 0.881 48 H 0.082 0.918 49 H 0.097 0.903 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 29.064 -8.299 -6.275 30.870 hybrid contribution 0.497 1.197 0.112 1.301 sum 29.561 -7.102 -6.163 31.020 Atomic orbital electron populations 1.69701 1.05116 1.25828 1.57604 1.24674 0.95234 0.97208 1.02064 0.86540 0.79205 0.84985 0.77770 1.21023 1.20363 1.21740 1.19059 0.80576 0.94774 1.42954 0.89193 1.42655 1.04010 1.02091 1.91211 1.20523 0.86844 0.89507 0.98973 1.22606 0.96632 0.96014 0.97613 0.89827 1.22747 0.93610 1.02106 0.97993 1.22201 0.97489 0.89179 0.92733 1.48403 1.07750 1.34675 1.42439 1.20348 0.83949 0.81465 0.83100 1.90689 1.84825 1.33826 1.32405 1.20897 0.93704 0.82996 0.92819 1.19346 1.02749 0.93341 0.92822 1.21013 0.99263 0.93198 0.98909 1.21100 1.00450 1.00019 0.92171 1.21227 0.99497 0.94556 0.98093 1.21185 1.00492 0.94369 0.98007 1.21018 0.97974 1.00730 0.91152 1.22985 0.94119 0.98569 1.01652 1.23143 0.98575 0.94082 1.03156 1.23674 0.91654 0.97479 0.90765 1.88942 1.74279 1.17029 1.46678 1.22286 0.82021 0.97712 0.99140 0.93049 0.80661 0.95221 0.95091 0.90133 0.89995 0.90302 0.91539 0.85618 0.85783 0.85974 0.85787 0.84877 0.88322 0.89523 0.90150 0.89730 0.88119 0.91792 0.90285 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.43 13.97 55.49 0.78 -28.65 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 3 Si 0.88 21.95 27.74 -169.99 -4.71 17.23 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 7 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.75 -17.68 5.35 -59.91 -0.32 -18.00 16 10 C 0.17 3.20 5.71 -4.04 -0.02 3.17 16 11 C -0.11 -1.65 3.05 -88.47 -0.27 -1.92 16 12 H 0.08 1.30 8.14 -51.92 -0.42 0.87 16 13 C -0.13 -1.72 6.37 -24.90 -0.16 -1.88 16 14 C 0.11 1.30 5.59 -3.06 -0.02 1.28 16 15 N -0.60 -8.17 3.33 -170.52 -0.57 -8.74 16 16 C 0.52 7.24 6.33 -10.99 -0.07 7.18 16 17 O -0.54 -8.79 15.76 5.56 0.09 -8.70 16 18 C 0.14 1.52 0.68 -92.35 -0.06 1.45 16 19 C -0.08 -0.88 4.61 -104.62 -0.48 -1.36 16 20 C -0.11 -1.11 8.81 -39.58 -0.35 -1.46 16 21 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 22 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 23 C -0.12 -1.06 10.05 -39.59 -0.40 -1.45 16 24 C -0.09 -0.88 9.18 -39.58 -0.36 -1.25 16 25 C -0.14 -1.25 5.95 -25.20 -0.15 -1.40 16 26 C -0.15 -1.07 7.15 -24.72 -0.18 -1.24 16 27 C 0.04 0.32 7.66 38.21 0.29 0.62 16 28 O -0.35 -3.52 6.32 -35.23 -0.22 -3.74 16 29 C 0.11 1.58 6.40 -2.53 -0.02 1.56 16 30 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 31 H 0.36 8.20 5.53 -40.82 -0.23 7.97 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.03 0.59 7.97 -51.93 -0.41 0.18 16 34 H 0.08 1.12 7.91 -51.93 -0.41 0.71 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.08 0.91 6.69 -51.93 -0.35 0.57 16 37 H 0.07 0.79 7.93 -51.93 -0.41 0.37 16 38 H 0.13 1.36 8.03 -52.49 -0.42 0.94 16 39 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 42 H 0.13 1.23 7.02 -52.49 -0.37 0.86 16 43 H 0.10 1.05 6.70 -51.93 -0.35 0.70 16 44 H 0.09 0.73 7.48 -51.93 -0.39 0.34 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.08 1.16 7.99 -51.93 -0.41 0.75 16 50 H 0.07 1.02 8.04 -51.93 -0.42 0.60 16 LS Contribution 395.63 15.07 5.96 5.96 Total: -1.00 -33.43 395.63 -10.28 -43.71 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -7.99 Total: 7.52 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -3.29 Total: -6.58 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.11 Total: -55.39 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.14 Total: -12.45 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.23 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.43 -10.28 -43.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480677052.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.006 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds