Wall clock time and date at job start Wed Apr 1 2020 03:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00208 * 2 1 4 4 H 1.48498 * 109.47354 * 270.00622 * 3 2 1 5 5 H 1.48500 * 109.46860 * 30.00098 * 3 2 1 6 6 H 1.48494 * 109.47286 * 150.00166 * 3 2 1 7 7 C 1.38807 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00237 * 188.42386 * 7 2 1 9 9 N 1.36936 * 120.00158 * 8.41902 * 7 2 1 10 10 C 1.47148 * 120.98205 * 31.61161 * 9 7 2 11 11 C 1.53300 * 108.38516 * 129.44430 * 10 9 7 12 12 O 1.42960 * 109.22351 * 52.30235 * 11 10 9 13 13 C 1.42965 * 114.16591 * 297.42145 * 12 11 10 14 14 H 1.09004 * 109.51176 * 302.65284 * 13 12 11 15 15 C 1.53000 * 109.55244 * 182.52900 * 13 12 11 16 16 N 1.46501 * 109.47061 * 61.57322 * 15 13 12 17 17 C 1.34772 * 119.99886 * 175.09800 * 16 15 13 18 18 O 1.21280 * 120.00214 * 4.43158 * 17 16 15 19 19 C 1.50702 * 120.00089 * 184.43731 * 17 16 15 20 20 C 1.53002 * 115.54951 * 279.25677 * 19 17 16 21 21 C 1.50700 * 109.46953 * 294.77824 * 20 19 17 22 22 C 1.38239 * 119.99678 * 274.98046 * 21 20 19 23 23 C 1.38236 * 119.99582 * 179.81119 * 22 21 20 24 24 C 1.38227 * 120.00172 * 0.42112 * 23 22 21 25 25 C 1.38238 * 120.00172 * 359.81273 * 24 23 22 26 26 C 1.38231 * 119.99977 * 359.97438 * 25 24 23 27 27 C 1.53003 * 117.49790 * 133.54655 * 19 17 16 28 28 C 1.52997 * 60.00082 * 252.50981 * 27 19 17 29 29 C 1.47155 * 120.98203 * 211.58763 * 9 7 2 30 30 H 0.97000 * 119.99354 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.68517 * 249.16379 * 10 9 7 32 32 H 1.08997 * 109.68082 * 9.68572 * 10 9 7 33 33 H 1.08997 * 109.51511 * 172.22932 * 11 10 9 34 34 H 1.09003 * 109.50740 * 292.37825 * 11 10 9 35 35 H 1.09003 * 109.46830 * 181.56909 * 15 13 12 36 36 H 1.08993 * 109.47082 * 301.57035 * 15 13 12 37 37 H 0.97000 * 119.99865 * 355.09346 * 16 15 13 38 38 H 1.08994 * 109.47128 * 54.77800 * 20 19 17 39 39 H 1.09005 * 109.46811 * 174.77690 * 20 19 17 40 40 H 1.07994 * 120.00064 * 0.02562 * 22 21 20 41 41 H 1.07998 * 119.99873 * 180.21311 * 23 22 21 42 42 H 1.08007 * 120.00119 * 179.79267 * 24 23 22 43 43 H 1.08000 * 120.00277 * 179.97438 * 25 24 23 44 44 H 1.08002 * 120.00546 * 179.97438 * 26 25 24 45 45 H 1.08997 * 117.50034 * 0.02562 * 27 19 17 46 46 H 1.09006 * 117.49638 * 145.02230 * 27 19 17 47 47 H 1.09000 * 117.50147 * 252.51448 * 28 27 19 48 48 H 1.09000 * 117.49843 * 107.48501 * 28 27 19 49 49 H 1.09005 * 109.67682 * 110.83739 * 29 9 7 50 50 H 1.09002 * 109.71614 * 350.30240 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0815 -1.2073 0.1365 9 7 1.3366 -2.3816 -0.1747 10 6 0.1224 -2.4452 -1.0035 11 6 0.2796 -3.5962 -2.0038 12 8 0.6295 -4.7890 -1.2977 13 6 1.8810 -4.7165 -0.6105 14 1 2.6728 -4.4770 -1.3203 15 6 2.1796 -6.0625 0.0530 16 7 2.2830 -7.1013 -0.9749 17 6 2.6401 -8.3549 -0.6324 18 8 2.7975 -8.6431 0.5351 19 6 2.8439 -9.3987 -1.7002 20 6 1.5688 -10.0554 -2.2330 21 6 0.9137 -10.8476 -1.1311 22 6 1.3177 -12.1453 -0.8787 23 6 0.7195 -12.8707 0.1346 24 6 -0.2887 -12.3015 0.8898 25 6 -0.6961 -11.0055 0.6342 26 6 -0.0949 -10.2785 -0.3761 27 6 4.1010 -10.2661 -1.6094 28 6 3.9937 -9.1850 -2.6867 29 6 1.8059 -3.6229 0.4611 30 1 -0.4849 0.8401 0.0004 31 1 -0.7457 -2.6257 -0.3697 32 1 -0.0046 -1.5056 -1.5412 33 1 -0.6606 -3.7492 -2.5335 34 1 1.0656 -3.3524 -2.7187 35 1 3.1204 -5.9973 0.5996 36 1 1.3747 -6.3136 0.7436 37 1 2.0945 -6.8868 -1.9019 38 1 0.8825 -9.2847 -2.5838 39 1 1.8206 -10.7208 -3.0588 40 1 2.1031 -12.5912 -1.4709 41 1 1.0375 -13.8834 0.3341 42 1 -0.7584 -12.8694 1.6793 43 1 -1.4841 -10.5609 1.2240 44 1 -0.4134 -9.2661 -0.5761 45 1 4.7804 -10.0821 -0.7772 46 1 4.0197 -11.3050 -1.9292 47 1 3.8418 -9.5126 -3.7152 48 1 4.6027 -8.2894 -2.5634 49 1 1.1071 -3.9220 1.2424 50 1 2.7938 -3.4640 0.8934 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482191512.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:31 Heat of formation + Delta-G solvation = -12.135495 kcal Electronic energy + Delta-G solvation = -30191.245435 eV Core-core repulsion = 26184.609810 eV Total energy + Delta-G solvation = -4006.635625 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.42256 -39.10862 -38.49110 -36.88079 -34.85328 -34.25577 -32.48806 -31.55516 -30.96830 -30.66857 -27.80047 -27.32853 -25.73491 -23.46695 -23.05362 -22.84974 -22.48171 -21.72388 -21.37101 -20.00037 -19.20220 -17.30453 -16.91985 -16.55917 -16.11260 -15.89467 -15.58755 -15.25406 -15.18875 -14.99516 -14.48253 -14.44217 -14.05251 -13.81092 -13.50220 -13.43229 -13.24694 -13.13272 -12.94654 -12.72656 -12.49521 -12.35984 -12.21740 -11.80286 -11.59367 -11.48049 -11.12013 -11.08211 -10.92303 -10.76453 -10.71578 -10.42172 -10.30064 -10.25432 -10.08512 -9.77982 -9.60756 -9.06615 -8.98107 -8.94102 -8.77237 -8.59049 -6.71216 -5.87142 -3.38303 1.25897 1.34089 2.67154 3.12271 3.31378 3.38130 3.39607 3.43633 3.71785 4.21494 4.37502 4.39336 4.49338 4.63140 4.69505 4.79980 4.91661 4.96079 5.03317 5.13095 5.27880 5.31611 5.35983 5.40199 5.44545 5.46788 5.50527 5.59099 5.62237 5.65734 5.79354 5.84769 5.85774 5.94220 5.96340 6.03065 6.14033 6.28473 6.35363 6.36742 6.44058 6.47661 6.51990 6.56185 6.74326 6.92771 7.09117 7.51812 7.61945 7.67895 7.83117 8.31562 8.34458 9.09751 9.69648 10.29113 11.20510 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019188 B = 0.002282 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.886863 B =12265.042431 C =12875.394010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.006 3.994 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.257 4.257 8 H 0.067 0.933 9 N -0.594 5.594 10 C 0.141 3.859 11 C 0.039 3.961 12 O -0.390 6.390 13 C 0.066 3.934 14 H 0.058 0.942 15 C 0.131 3.869 16 N -0.716 5.716 17 C 0.548 3.452 18 O -0.534 6.534 19 C -0.149 4.149 20 C -0.037 4.037 21 C -0.078 4.078 22 C -0.111 4.111 23 C -0.122 4.122 24 C -0.124 4.124 25 C -0.116 4.116 26 C -0.105 4.105 27 C -0.143 4.143 28 C -0.163 4.163 29 C 0.122 3.878 30 H 0.256 0.744 31 H 0.028 0.972 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.404 0.596 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.100 0.900 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.100 0.900 49 H 0.030 0.970 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.014 -23.309 -6.816 24.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.386 4.386 8 H 0.084 0.916 9 N -0.318 5.318 10 C 0.016 3.984 11 C -0.039 4.039 12 O -0.309 6.309 13 C 0.006 3.994 14 H 0.076 0.924 15 C 0.007 3.993 16 N -0.367 5.367 17 C 0.333 3.667 18 O -0.410 6.410 19 C -0.152 4.152 20 C -0.074 4.074 21 C -0.078 4.078 22 C -0.129 4.129 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.134 4.134 26 C -0.123 4.123 27 C -0.180 4.180 28 C -0.200 4.200 29 C -0.006 4.006 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.238 0.762 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.118 0.882 49 H 0.047 0.953 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.911 -23.473 -5.932 24.386 hybrid contribution 0.357 1.375 -0.315 1.455 sum 3.268 -22.098 -6.247 23.196 Atomic orbital electron populations 1.69965 1.05300 1.25687 1.53873 1.25228 0.95505 0.98510 1.00060 0.86207 0.79039 0.83272 0.77723 1.21323 1.21540 1.20320 1.19173 0.90501 0.83375 1.45594 0.91571 1.43995 1.29509 1.03968 1.54285 1.21434 0.88688 0.96500 0.91826 1.23344 0.98888 0.86728 0.94910 1.87768 1.37972 1.37293 1.67902 1.22795 0.86767 0.94187 0.95653 0.92444 1.21418 1.02038 0.85292 0.90541 1.45908 1.69512 1.09134 1.12152 1.19404 0.76490 0.82123 0.88705 1.90704 1.50829 1.80195 1.19262 1.21376 0.92236 1.01026 1.00582 1.20066 0.93608 0.98338 0.95413 1.19694 0.96237 0.94390 0.97442 1.20931 0.99591 0.94097 0.98282 1.21074 0.96957 0.99791 0.96180 1.21117 0.97789 0.95603 0.99697 1.21136 1.00028 0.94614 0.97609 1.21067 0.96108 0.99570 0.95581 1.22957 0.97662 0.96428 1.00982 1.23167 0.99566 1.01493 0.95752 1.21457 0.98961 0.87217 0.92923 0.93422 0.95366 0.88835 0.90092 0.94175 0.90214 0.90931 0.76163 0.89996 0.89869 0.86451 0.86355 0.86374 0.86170 0.86267 0.88141 0.88033 0.87759 0.88156 0.95260 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.78 11.03 55.49 0.61 -25.17 16 2 C 0.01 0.16 5.11 -17.43 -0.09 0.08 16 3 Si 0.91 21.27 29.56 -169.99 -5.03 16.25 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.26 -6.92 9.63 -15.06 -0.15 -7.06 16 8 H 0.07 1.74 7.84 -52.49 -0.41 1.33 16 9 N -0.59 -14.71 3.04 -171.83 -0.52 -15.23 16 10 C 0.14 3.32 5.37 -3.53 -0.02 3.30 16 11 C 0.04 0.73 6.98 37.31 0.26 0.99 16 12 O -0.39 -7.09 10.15 -35.23 -0.36 -7.45 16 13 C 0.07 1.13 2.86 -26.58 -0.08 1.05 16 14 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 15 C 0.13 1.98 5.37 -4.04 -0.02 1.96 16 16 N -0.72 -9.41 5.47 -60.29 -0.33 -9.74 16 17 C 0.55 7.51 6.54 -10.99 -0.07 7.44 16 18 O -0.53 -9.42 17.01 5.56 0.09 -9.33 16 19 C -0.15 -1.50 1.86 -155.66 -0.29 -1.79 16 20 C -0.04 -0.33 5.22 -27.88 -0.15 -0.48 16 21 C -0.08 -0.84 4.85 -104.62 -0.51 -1.35 16 22 C -0.11 -1.10 9.72 -39.58 -0.38 -1.49 16 23 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 24 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 25 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 26 C -0.11 -1.27 9.55 -39.58 -0.38 -1.64 16 27 C -0.14 -1.27 9.88 -26.73 -0.26 -1.54 16 28 C -0.16 -1.27 9.92 -26.73 -0.27 -1.53 16 29 C 0.12 2.52 6.02 -3.53 -0.02 2.50 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.09 2.41 6.28 -51.93 -0.33 2.08 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.40 4.71 8.34 -40.82 -0.34 4.37 16 38 H 0.08 0.71 8.05 -51.93 -0.42 0.30 16 39 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 40 H 0.12 0.91 7.88 -52.49 -0.41 0.49 16 41 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 43 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 44 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 45 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.10 0.72 7.97 -51.93 -0.41 0.30 16 47 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.06 1.26 7.96 -51.93 -0.41 0.84 16 LS Contribution 410.97 15.07 6.19 6.19 Total: -1.00 -32.21 410.97 -11.16 -43.36 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -8.21 Total: 5.64 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -3.61 Total: -4.53 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.24 Total: -50.14 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.26 Total: -16.78 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.21 -11.16 -43.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482191512.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.228 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds