Wall clock time and date at job start Wed Apr 1 2020 02:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99858 * 2 1 4 4 H 1.48499 * 109.47414 * 269.99888 * 3 2 1 5 5 H 1.48507 * 109.46967 * 30.00051 * 3 2 1 6 6 H 1.48502 * 109.47303 * 149.99611 * 3 2 1 7 7 C 1.38812 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00464 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99539 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99814 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47477 * 185.01320 * 10 9 7 12 12 H 1.09000 * 110.00053 * 306.33780 * 11 10 9 13 13 C 1.54322 * 109.77193 * 67.48259 * 11 10 9 14 14 C 1.55155 * 102.86122 * 141.88861 * 13 11 10 15 15 C 1.54909 * 101.58137 * 324.30456 * 14 13 11 16 16 N 1.47020 * 109.88761 * 185.23575 * 11 10 9 17 17 C 1.34773 * 125.64850 * 61.67507 * 16 11 10 18 18 O 1.21284 * 119.99699 * 354.79996 * 17 16 11 19 19 C 1.50699 * 119.99983 * 174.79154 * 17 16 11 20 20 C 1.53004 * 109.46870 * 180.02562 * 19 17 16 21 21 H 1.08999 * 109.20072 * 55.41573 * 20 19 17 22 22 O 1.42717 * 109.33649 * 295.82199 * 20 19 17 23 23 C 1.43215 * 113.16418 * 188.01138 * 22 20 19 24 24 C 1.52974 * 108.47991 * 70.61650 * 23 22 20 25 25 C 1.50745 * 109.74679 * 310.69424 * 24 23 22 26 26 C 1.38596 * 118.76333 * 197.08916 * 25 24 23 27 27 C 1.38062 * 120.27457 * 180.45043 * 26 25 24 28 28 C 1.38257 * 119.86215 * 0.02562 * 27 26 25 29 29 C 1.38057 * 119.90065 * 359.89491 * 28 27 26 30 30 C 1.37900 * 121.34880 * 17.33715 * 25 24 23 31 31 H 0.96999 * 120.00508 * 359.97438 * 1 2 3 32 32 H 0.96995 * 120.00664 * 0.02562 * 9 7 2 33 33 H 1.08997 * 109.47133 * 65.01481 * 10 9 7 34 34 H 1.09005 * 109.47497 * 305.01746 * 10 9 7 35 35 H 1.08998 * 110.92188 * 23.47763 * 13 11 10 36 36 H 1.08998 * 110.74806 * 260.22049 * 13 11 10 37 37 H 1.09005 * 111.00577 * 206.23537 * 14 13 11 38 38 H 1.08998 * 111.03899 * 82.39610 * 14 13 11 39 39 H 1.09006 * 110.36953 * 278.17108 * 15 14 13 40 40 H 1.08998 * 110.45903 * 155.89906 * 15 14 13 41 41 H 1.09000 * 109.46847 * 60.00630 * 19 17 16 42 42 H 1.08991 * 109.47528 * 300.00523 * 19 17 16 43 43 H 1.08996 * 109.63312 * 310.91475 * 23 22 20 44 44 H 1.08996 * 109.63049 * 190.30897 * 23 22 20 45 45 H 1.08993 * 109.42135 * 190.60845 * 24 23 22 46 46 H 1.08998 * 109.37995 * 70.75132 * 24 23 22 47 47 H 1.07999 * 119.86071 * 0.45443 * 26 25 24 48 48 H 1.08007 * 120.07138 * 180.02562 * 27 26 25 49 49 H 1.08000 * 120.05059 * 180.17596 * 28 27 26 50 50 H 1.07999 * 119.85034 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0689 -4.8169 -0.1255 12 1 0.3047 -4.7410 0.6480 13 6 0.4107 -4.7925 -1.5211 14 6 0.3097 -6.2982 -1.8818 15 6 1.6108 -6.8565 -1.2531 16 7 1.7810 -6.0972 -0.0009 17 6 2.4703 -6.5105 1.0809 18 8 2.6196 -5.7651 2.0260 19 6 3.0555 -7.8988 1.1163 20 6 3.7816 -8.1124 2.4460 21 1 3.0924 -7.9137 3.2667 22 8 4.8878 -7.2146 2.5299 23 6 5.7335 -7.4665 3.6579 24 6 6.4885 -8.7747 3.4154 25 6 5.5209 -9.8502 2.9916 26 6 5.9210 -11.1749 3.0675 27 6 5.0633 -12.1845 2.6787 28 6 3.8001 -11.8726 2.2112 29 6 3.4001 -10.5533 2.1369 30 6 4.2593 -9.5388 2.5300 31 1 -0.4851 0.8400 0.0004 32 1 0.3557 -2.3881 -0.0002 33 1 2.6158 -3.7543 0.9320 34 1 2.7506 -3.6765 -0.8411 35 1 1.0394 -4.2654 -2.2388 36 1 -0.5798 -4.3402 -1.4730 37 1 0.3052 -6.4417 -2.9623 38 1 -0.5704 -6.7516 -1.4258 39 1 2.4573 -6.6858 -1.9183 40 1 1.5051 -7.9202 -1.0402 41 1 3.7609 -8.0168 0.2937 42 1 2.2559 -8.6328 1.0173 43 1 5.1260 -7.5557 4.5584 44 1 6.4450 -6.6488 3.7720 45 1 6.9898 -9.0795 4.3339 46 1 7.2298 -8.6243 2.6306 47 1 6.9079 -11.4185 3.4323 48 1 5.3784 -13.2158 2.7396 49 1 3.1256 -12.6601 1.9089 50 1 2.4133 -10.3106 1.7712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483952482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:18 Heat of formation + Delta-G solvation = -39.576399 kcal Electronic energy + Delta-G solvation = -30342.064174 eV Core-core repulsion = 26334.238622 eV Total energy + Delta-G solvation = -4007.825552 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.79328 -39.78449 -37.83847 -37.09943 -34.45130 -33.92877 -32.50102 -31.63591 -31.20993 -30.17135 -28.94217 -28.24588 -25.08563 -24.65507 -24.01665 -23.06645 -22.08291 -21.80872 -20.49088 -20.22249 -18.76197 -17.68854 -17.05196 -16.68623 -16.44198 -16.39793 -15.86182 -15.49767 -14.93318 -14.56630 -14.51868 -14.39242 -13.93676 -13.80313 -13.62205 -13.45710 -13.24376 -13.12111 -12.81335 -12.74072 -12.65540 -12.44678 -12.26568 -12.03428 -11.97234 -11.59670 -11.35641 -11.23875 -11.04852 -10.85558 -10.78871 -10.76358 -10.48427 -10.37240 -9.97534 -9.75254 -9.67045 -9.45426 -9.07484 -8.89479 -8.74131 -8.32827 -6.79842 -5.66966 -2.94286 0.99332 1.04098 2.90006 3.12169 3.39719 3.50442 3.55396 3.58153 3.66021 4.27162 4.34686 4.49434 4.60350 4.64954 4.68860 4.71042 4.79346 4.83829 4.97170 5.00570 5.07375 5.11861 5.13030 5.24881 5.27127 5.37438 5.46777 5.50798 5.55413 5.64138 5.65655 5.66982 5.67632 5.72365 5.80406 5.86367 5.98454 6.11681 6.13647 6.17491 6.18039 6.25494 6.27990 6.49861 6.65214 6.65974 6.92557 7.07357 7.16649 7.78265 7.81939 8.46275 8.53047 9.63099 10.20867 10.56575 11.56318 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015474 B = 0.002508 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.107234 B =11160.374265 C =12645.410781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.907 3.093 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.230 4.230 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.145 3.855 11 C 0.132 3.868 12 H 0.074 0.926 13 C -0.120 4.120 14 C -0.135 4.135 15 C 0.100 3.900 16 N -0.616 5.616 17 C 0.526 3.474 18 O -0.513 6.513 19 C -0.127 4.127 20 C 0.147 3.853 21 H 0.080 0.920 22 O -0.353 6.353 23 C 0.060 3.940 24 C -0.118 4.118 25 C -0.069 4.069 26 C -0.119 4.119 27 C -0.119 4.119 28 C -0.123 4.123 29 C -0.111 4.111 30 C -0.111 4.111 31 H 0.254 0.746 32 H 0.382 0.618 33 H 0.037 0.963 34 H 0.019 0.981 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.055 0.945 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.122 0.878 48 H 0.122 0.878 49 H 0.123 0.877 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.705 -28.985 1.877 30.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.361 4.361 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.017 3.983 11 C 0.029 3.971 12 H 0.092 0.908 13 C -0.158 4.158 14 C -0.173 4.173 15 C -0.023 4.023 16 N -0.352 5.352 17 C 0.313 3.687 18 O -0.388 6.388 19 C -0.167 4.167 20 C 0.089 3.911 21 H 0.098 0.902 22 O -0.271 6.271 23 C -0.017 4.017 24 C -0.155 4.155 25 C -0.069 4.069 26 C -0.137 4.137 27 C -0.137 4.137 28 C -0.141 4.141 29 C -0.129 4.129 30 C -0.112 4.112 31 H 0.063 0.937 32 H 0.216 0.784 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.074 0.926 44 H 0.119 0.881 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.140 0.860 48 H 0.140 0.860 49 H 0.141 0.859 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.017 -28.330 2.350 29.536 hybrid contribution 0.159 0.547 0.061 0.573 sum 8.176 -27.783 2.412 29.061 Atomic orbital electron populations 1.69655 1.05040 1.25463 1.58400 1.24709 0.95540 0.97559 1.03418 0.86181 0.78704 0.83901 0.77408 1.21833 1.21824 1.20799 1.19225 0.91018 0.84059 1.41831 0.91300 1.42212 1.05701 0.99804 1.89621 1.20988 0.93347 0.84973 0.98982 1.21787 0.94481 0.83355 0.97480 0.90805 1.22658 1.02081 0.95136 0.95933 1.22798 0.96853 0.96787 1.00850 1.22303 0.98311 0.95664 0.86028 1.48542 1.52786 1.19336 1.14517 1.19998 0.78123 0.88814 0.81718 1.90776 1.57052 1.55603 1.35337 1.21770 1.00608 0.95663 0.98633 1.20524 0.88647 0.84456 0.97504 0.90228 1.88207 1.38136 1.53947 1.46780 1.22594 0.93377 0.96479 0.89270 1.21196 0.97623 0.94282 1.02374 1.19546 0.94108 0.94549 0.98719 1.21079 0.99817 0.92044 1.00778 1.21118 0.94255 0.99144 0.99151 1.21097 0.96538 0.96264 1.00162 1.21088 0.99488 0.92450 0.99869 1.20270 0.94505 0.96202 1.00205 0.93653 0.78429 0.94541 0.96329 0.89974 0.89882 0.90100 0.90874 0.91414 0.91092 0.88136 0.87701 0.92626 0.88116 0.89777 0.89580 0.86009 0.86031 0.85892 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.16 13.06 55.49 0.72 -28.43 16 2 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 3 Si 0.91 23.38 29.55 -169.99 -5.02 18.35 16 4 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 6 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.23 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.73 -19.65 5.42 -59.91 -0.32 -19.97 16 10 C 0.15 3.32 5.66 -4.04 -0.02 3.29 16 11 C 0.13 2.37 2.95 -66.96 -0.20 2.17 16 12 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 13 C -0.12 -1.79 6.23 -24.90 -0.16 -1.95 16 14 C -0.13 -1.42 7.08 -24.58 -0.17 -1.59 16 15 C 0.10 1.07 6.74 -2.53 -0.02 1.05 16 16 N -0.62 -9.25 3.07 -163.02 -0.50 -9.75 16 17 C 0.53 8.39 7.54 -10.99 -0.08 8.31 16 18 O -0.51 -10.59 14.17 -9.78 -0.14 -10.73 16 19 C -0.13 -1.44 4.03 -27.88 -0.11 -1.55 16 20 C 0.15 1.80 2.29 -27.90 -0.06 1.74 16 21 H 0.08 1.05 7.96 -51.93 -0.41 0.64 16 22 O -0.35 -5.06 9.60 -50.57 -0.49 -5.55 16 23 C 0.06 0.65 6.85 37.14 0.25 0.90 16 24 C -0.12 -1.02 6.01 -27.87 -0.17 -1.19 16 25 C -0.07 -0.67 5.77 -104.59 -0.60 -1.28 16 26 C -0.12 -0.98 9.67 -39.51 -0.38 -1.36 16 27 C -0.12 -0.89 10.05 -39.64 -0.40 -1.29 16 28 C -0.12 -0.93 10.05 -39.64 -0.40 -1.33 16 29 C -0.11 -0.95 9.09 -39.50 -0.36 -1.31 16 30 C -0.11 -1.16 5.47 -104.62 -0.57 -1.73 16 31 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.38 10.59 7.61 -40.82 -0.31 10.28 16 33 H 0.04 0.94 6.55 -51.93 -0.34 0.60 16 34 H 0.02 0.43 8.02 -51.93 -0.42 0.02 16 35 H 0.08 1.33 7.77 -51.93 -0.40 0.93 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.55 7.47 -51.93 -0.39 0.16 16 41 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.10 0.86 6.13 -51.93 -0.32 0.54 16 43 H 0.06 0.58 8.07 -51.93 -0.42 0.16 16 44 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 48 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 49 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 50 H 0.13 0.85 6.45 -52.49 -0.34 0.51 16 LS Contribution 396.75 15.07 5.98 5.98 Total: -1.00 -36.38 396.75 -11.43 -47.82 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.97 Total: 6.97 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -3.70 Total: -4.68 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -0.10 Total: -58.15 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.62 Total: -16.28 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.38 -11.43 -47.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483952482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.241 kcal (2) G-P(sol) polarization free energy of solvation -36.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds