Wall clock time and date at job start Wed Apr 1 2020 02:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99858 * 2 1 4 4 H 1.48499 * 109.47414 * 269.99888 * 3 2 1 5 5 H 1.48507 * 109.46967 * 30.00051 * 3 2 1 6 6 H 1.48502 * 109.47303 * 149.99611 * 3 2 1 7 7 C 1.38812 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00464 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99539 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99814 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47477 * 185.01320 * 10 9 7 12 12 H 1.09000 * 110.00053 * 306.33780 * 11 10 9 13 13 C 1.54322 * 109.77193 * 67.48259 * 11 10 9 14 14 C 1.55155 * 102.86122 * 141.88861 * 13 11 10 15 15 C 1.54909 * 101.58137 * 324.30456 * 14 13 11 16 16 N 1.47020 * 109.88761 * 185.23575 * 11 10 9 17 17 C 1.34773 * 125.64850 * 61.67507 * 16 11 10 18 18 O 1.21284 * 119.99699 * 354.79996 * 17 16 11 19 19 C 1.50699 * 119.99983 * 174.79154 * 17 16 11 20 20 C 1.53004 * 109.46870 * 180.02562 * 19 17 16 21 21 H 1.08999 * 109.20072 * 55.41573 * 20 19 17 22 22 O 1.42717 * 109.33649 * 295.82199 * 20 19 17 23 23 C 1.43215 * 113.16418 * 188.01138 * 22 20 19 24 24 C 1.52974 * 108.47991 * 70.61650 * 23 22 20 25 25 C 1.50745 * 109.74679 * 310.69424 * 24 23 22 26 26 C 1.38596 * 118.76333 * 197.08916 * 25 24 23 27 27 C 1.38062 * 120.27457 * 180.45043 * 26 25 24 28 28 C 1.38257 * 119.86215 * 0.02562 * 27 26 25 29 29 C 1.38057 * 119.90065 * 359.89491 * 28 27 26 30 30 C 1.37900 * 121.34880 * 17.33715 * 25 24 23 31 31 H 0.96999 * 120.00508 * 359.97438 * 1 2 3 32 32 H 0.96995 * 120.00664 * 0.02562 * 9 7 2 33 33 H 1.08997 * 109.47133 * 65.01481 * 10 9 7 34 34 H 1.09005 * 109.47497 * 305.01746 * 10 9 7 35 35 H 1.08998 * 110.92188 * 23.47763 * 13 11 10 36 36 H 1.08998 * 110.74806 * 260.22049 * 13 11 10 37 37 H 1.09005 * 111.00577 * 206.23537 * 14 13 11 38 38 H 1.08998 * 111.03899 * 82.39610 * 14 13 11 39 39 H 1.09006 * 110.36953 * 278.17108 * 15 14 13 40 40 H 1.08998 * 110.45903 * 155.89906 * 15 14 13 41 41 H 1.09000 * 109.46847 * 60.00630 * 19 17 16 42 42 H 1.08991 * 109.47528 * 300.00523 * 19 17 16 43 43 H 1.08996 * 109.63312 * 310.91475 * 23 22 20 44 44 H 1.08996 * 109.63049 * 190.30897 * 23 22 20 45 45 H 1.08993 * 109.42135 * 190.60845 * 24 23 22 46 46 H 1.08998 * 109.37995 * 70.75132 * 24 23 22 47 47 H 1.07999 * 119.86071 * 0.45443 * 26 25 24 48 48 H 1.08007 * 120.07138 * 180.02562 * 27 26 25 49 49 H 1.08000 * 120.05059 * 180.17596 * 28 27 26 50 50 H 1.07999 * 119.85034 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0689 -4.8169 -0.1255 12 1 0.3047 -4.7410 0.6480 13 6 0.4107 -4.7925 -1.5211 14 6 0.3097 -6.2982 -1.8818 15 6 1.6108 -6.8565 -1.2531 16 7 1.7810 -6.0972 -0.0009 17 6 2.4703 -6.5105 1.0809 18 8 2.6196 -5.7651 2.0260 19 6 3.0555 -7.8988 1.1163 20 6 3.7816 -8.1124 2.4460 21 1 3.0924 -7.9137 3.2667 22 8 4.8878 -7.2146 2.5299 23 6 5.7335 -7.4665 3.6579 24 6 6.4885 -8.7747 3.4154 25 6 5.5209 -9.8502 2.9916 26 6 5.9210 -11.1749 3.0675 27 6 5.0633 -12.1845 2.6787 28 6 3.8001 -11.8726 2.2112 29 6 3.4001 -10.5533 2.1369 30 6 4.2593 -9.5388 2.5300 31 1 -0.4851 0.8400 0.0004 32 1 0.3557 -2.3881 -0.0002 33 1 2.6158 -3.7543 0.9320 34 1 2.7506 -3.6765 -0.8411 35 1 1.0394 -4.2654 -2.2388 36 1 -0.5798 -4.3402 -1.4730 37 1 0.3052 -6.4417 -2.9623 38 1 -0.5704 -6.7516 -1.4258 39 1 2.4573 -6.6858 -1.9183 40 1 1.5051 -7.9202 -1.0402 41 1 3.7609 -8.0168 0.2937 42 1 2.2559 -8.6328 1.0173 43 1 5.1260 -7.5557 4.5584 44 1 6.4450 -6.6488 3.7720 45 1 6.9898 -9.0795 4.3339 46 1 7.2298 -8.6243 2.6306 47 1 6.9079 -11.4185 3.4323 48 1 5.3784 -13.2158 2.7396 49 1 3.1256 -12.6601 1.9089 50 1 2.4133 -10.3106 1.7712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483952482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:17 Heat of formation + Delta-G solvation = -62.375921 kcal Electronic energy + Delta-G solvation = -30343.052836 eV Core-core repulsion = 26334.238622 eV Total energy + Delta-G solvation = -4008.814213 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.67080 -40.88684 -38.80323 -38.22197 -36.43225 -34.79859 -33.56770 -33.16753 -32.52182 -30.96358 -30.32786 -29.25924 -26.74211 -25.71063 -24.80338 -24.51039 -23.48917 -22.66581 -21.67136 -20.98897 -20.13042 -19.11842 -18.44518 -17.82543 -17.64938 -17.21920 -16.81464 -16.45401 -16.20628 -16.07064 -15.55601 -15.39489 -15.25201 -15.05504 -14.94944 -14.68347 -14.52031 -14.19788 -13.98713 -13.78320 -13.63678 -13.42724 -13.31011 -13.11363 -12.94535 -12.88637 -12.73849 -12.62937 -12.39741 -12.22521 -12.05093 -11.92706 -11.84465 -11.78708 -11.58015 -11.55955 -11.03742 -10.77879 -10.56317 -9.69877 -9.62688 -9.53883 -9.05518 -7.99458 -5.29241 0.36522 0.45465 1.42751 1.45914 1.54633 1.67870 1.95837 2.53488 2.72295 2.86272 3.32242 3.39046 3.63917 3.67595 3.69256 3.80659 3.89600 3.93849 4.00639 4.11769 4.13765 4.21846 4.27777 4.30525 4.31378 4.37262 4.41804 4.53879 4.58719 4.62093 4.66724 4.74469 4.81167 4.85661 4.89140 4.95719 4.97025 5.06299 5.08880 5.15277 5.16524 5.17030 5.36943 5.41387 5.50036 5.52454 5.61395 5.64443 6.08759 6.19437 6.22173 6.61762 7.24101 7.28502 7.99796 8.28195 9.23852 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015474 B = 0.002508 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.107234 B =11160.374265 C =12645.410781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.977 3.023 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.736 5.736 10 C 0.154 3.846 11 C 0.138 3.862 12 H 0.051 0.949 13 C -0.118 4.118 14 C -0.118 4.118 15 C 0.094 3.906 16 N -0.615 5.615 17 C 0.516 3.484 18 O -0.574 6.574 19 C -0.112 4.112 20 C 0.146 3.854 21 H 0.056 0.944 22 O -0.388 6.388 23 C 0.052 3.948 24 C -0.110 4.110 25 C -0.089 4.089 26 C -0.125 4.125 27 C -0.120 4.120 28 C -0.124 4.124 29 C -0.116 4.116 30 C -0.130 4.130 31 H 0.254 0.746 32 H 0.376 0.624 33 H 0.001 0.999 34 H 0.016 0.984 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.144 0.856 43 H 0.050 0.950 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.087 0.913 47 H 0.140 0.860 48 H 0.146 0.854 49 H 0.149 0.851 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.133 -32.207 0.375 33.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.805 3.195 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.379 5.379 10 C 0.026 3.974 11 C 0.034 3.966 12 H 0.069 0.931 13 C -0.156 4.156 14 C -0.156 4.156 15 C -0.027 4.027 16 N -0.350 5.350 17 C 0.306 3.694 18 O -0.452 6.452 19 C -0.151 4.151 20 C 0.088 3.912 21 H 0.074 0.926 22 O -0.307 6.307 23 C -0.025 4.025 24 C -0.147 4.147 25 C -0.089 4.089 26 C -0.143 4.143 27 C -0.137 4.137 28 C -0.142 4.142 29 C -0.134 4.134 30 C -0.130 4.130 31 H 0.063 0.937 32 H 0.208 0.792 33 H 0.019 0.981 34 H 0.034 0.966 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.129 0.871 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.162 0.838 43 H 0.068 0.932 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.105 0.895 47 H 0.158 0.842 48 H 0.164 0.836 49 H 0.166 0.834 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.458 -31.607 0.811 32.729 hybrid contribution 0.046 1.527 0.578 1.634 sum 8.504 -30.080 1.389 31.290 Atomic orbital electron populations 1.69806 1.06445 1.26296 1.59051 1.25580 0.96557 1.01012 1.03211 0.85099 0.77461 0.79152 0.77779 1.20596 1.21566 1.20156 1.19535 0.91139 0.85463 1.42062 0.91713 1.42321 1.05476 1.00677 1.89450 1.20940 0.94109 0.85593 0.96759 1.21506 0.92925 0.83289 0.98920 0.93110 1.22563 1.00791 0.98923 0.93352 1.22812 0.97400 0.92478 1.02872 1.22682 0.98717 0.97429 0.83904 1.48680 1.51899 1.18402 1.16004 1.20952 0.77314 0.90189 0.80902 1.90748 1.59258 1.57579 1.37634 1.21809 1.01600 0.93000 0.98721 1.20502 0.87862 0.85676 0.97148 0.92643 1.88143 1.39117 1.55496 1.47958 1.22755 0.93282 0.98110 0.88343 1.21134 0.97269 0.92855 1.03404 1.19748 0.94230 0.95519 0.99387 1.21323 1.00907 0.91441 1.00652 1.21498 0.94080 1.00212 0.97940 1.21444 0.97009 0.96386 0.99366 1.21310 0.99892 0.92553 0.99617 1.20166 0.95513 0.95145 1.02178 0.93716 0.79182 0.98114 0.96629 0.91466 0.90586 0.87104 0.89345 0.90559 0.86766 0.86713 0.83848 0.93150 0.87906 0.87690 0.89469 0.84230 0.83586 0.83363 0.83996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.39 13.06 21.65 0.28 -61.11 16 2 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 3 Si 0.98 48.77 29.55 68.60 2.03 50.79 16 4 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 5 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 7 C -0.25 -15.37 9.99 84.03 0.84 -14.53 16 8 H 0.06 3.94 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -41.71 5.42 -343.45 -1.86 -43.57 16 10 C 0.15 7.46 5.66 86.38 0.49 7.94 16 11 C 0.14 5.15 2.95 45.34 0.13 5.28 16 12 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 13 C -0.12 -3.51 6.23 31.78 0.20 -3.31 16 14 C -0.12 -2.10 7.08 31.99 0.23 -1.87 16 15 C 0.09 1.70 6.74 86.86 0.59 2.28 16 16 N -0.62 -18.31 3.07 -788.07 -2.42 -20.72 16 17 C 0.52 16.86 7.54 87.66 0.66 17.52 16 18 O -0.57 -25.45 14.17 11.62 0.16 -25.29 16 19 C -0.11 -2.41 4.03 29.85 0.12 -2.29 16 20 C 0.15 3.67 2.29 29.84 0.07 3.74 16 21 H 0.06 1.59 7.96 -2.39 -0.02 1.57 16 22 O -0.39 -11.82 9.60 -134.32 -1.29 -13.11 16 23 C 0.05 1.19 6.85 71.97 0.49 1.68 16 24 C -0.11 -1.88 6.01 29.85 0.18 -1.70 16 25 C -0.09 -1.64 5.77 -19.84 -0.11 -1.75 16 26 C -0.13 -1.77 9.67 22.31 0.22 -1.55 16 27 C -0.12 -1.40 10.05 22.23 0.22 -1.17 16 28 C -0.12 -1.46 10.05 22.23 0.22 -1.23 16 29 C -0.12 -1.69 9.09 22.32 0.20 -1.49 16 30 C -0.13 -2.56 5.47 -19.86 -0.11 -2.67 16 31 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 32 H 0.38 21.91 7.61 -92.71 -0.71 21.21 16 33 H 0.00 0.05 6.55 -2.39 -0.02 0.04 16 34 H 0.02 0.76 8.02 -2.38 -0.02 0.74 16 35 H 0.07 2.19 7.77 -2.39 -0.02 2.17 16 36 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.11 1.16 7.47 -2.39 -0.02 1.14 16 41 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.14 1.89 6.13 -2.39 -0.01 1.87 16 43 H 0.05 1.16 8.07 -2.39 -0.02 1.14 16 44 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 48 H 0.15 0.95 8.06 -2.91 -0.02 0.92 16 49 H 0.15 0.95 8.06 -2.91 -0.02 0.92 16 50 H 0.14 1.45 6.45 -2.91 -0.02 1.43 16 Total: -1.00 -84.63 396.75 2.25 -82.38 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: 0.23 Total: 29.63 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 5.10 Total: 1.00 kcal Atomic # 7 Polarization: -121.41 SS G_CDS: -3.99 Total: -125.40 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -1.13 Total: -38.40 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 2.03 Total: 50.79 kcal Total: -84.63 2.25 -82.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483952482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.007 kcal (2) G-P(sol) polarization free energy of solvation -84.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds