Wall clock time and date at job start Wed Apr 1 2020 02:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47102 * 299.99508 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99856 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47008 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47347 * 180.02562 * 11 10 9 13 13 H 1.09001 * 110.88079 * 305.70186 * 12 11 10 14 14 C 1.55156 * 111.00523 * 69.57963 * 12 11 10 15 15 C 1.54321 * 102.94001 * 153.57533 * 14 12 11 16 16 N 1.47025 * 107.27496 * 337.81071 * 15 14 12 17 17 C 1.34775 * 125.65038 * 178.99300 * 16 15 14 18 18 O 1.21282 * 119.99895 * 179.97438 * 17 16 15 19 19 C 1.50698 * 120.00041 * 359.97438 * 17 16 15 20 20 C 1.52992 * 109.47271 * 179.97438 * 19 17 16 21 21 H 1.09007 * 110.13212 * 306.69588 * 20 19 17 22 22 O 1.43941 * 110.15369 * 68.46996 * 20 19 17 23 23 C 1.43952 * 104.94947 * 147.56839 * 22 20 19 24 24 C 1.51077 * 105.95617 * 331.55729 * 23 22 20 25 25 C 1.37963 * 132.68949 * 197.71193 * 24 23 22 26 26 C 1.38303 * 119.91973 * 180.02562 * 25 24 23 27 27 C 1.38261 * 120.04086 * 359.95261 * 26 25 24 28 28 C 1.38292 * 120.04124 * 0.02562 * 27 26 25 29 29 C 1.37960 * 119.91938 * 359.97438 * 28 27 26 30 30 C 1.47473 * 108.72078 * 358.97226 * 16 15 14 31 31 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 32 32 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 33 33 H 1.08995 * 109.48126 * 300.00228 * 10 9 7 34 34 H 1.09002 * 109.47178 * 60.00594 * 10 9 7 35 35 H 1.09005 * 109.47089 * 300.00548 * 11 10 9 36 36 H 1.09004 * 109.47291 * 60.00299 * 11 10 9 37 37 H 1.09001 * 110.72089 * 271.94279 * 14 12 11 38 38 H 1.09001 * 110.71883 * 35.21840 * 14 12 11 39 39 H 1.09003 * 109.88099 * 97.22414 * 15 14 12 40 40 H 1.09001 * 109.88204 * 218.38693 * 15 14 12 41 41 H 1.09005 * 109.47040 * 299.99953 * 19 17 16 42 42 H 1.09000 * 109.46980 * 59.99515 * 19 17 16 43 43 H 1.09001 * 110.15354 * 212.43263 * 23 22 20 44 44 H 1.08998 * 110.15256 * 90.67473 * 23 22 20 45 45 H 1.07997 * 120.04423 * 0.02562 * 25 24 23 46 46 H 1.08005 * 119.97485 * 179.97438 * 26 25 24 47 47 H 1.07999 * 119.97531 * 180.02562 * 27 26 25 48 48 H 1.08000 * 120.04090 * 179.97438 * 28 27 26 49 49 H 1.08997 * 110.34872 * 265.25709 * 30 16 15 50 50 H 1.08994 * 110.40403 * 142.91423 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.0638 -4.8197 -0.0001 12 6 1.8288 -6.1448 0.0005 13 1 2.5384 -6.1841 -0.8260 14 6 2.5436 -6.3736 1.3585 15 6 2.6425 -7.9114 1.4421 16 7 1.6051 -8.4643 0.5591 17 6 1.3770 -9.7743 0.3393 18 8 0.4895 -10.1175 -0.4127 19 6 2.2248 -10.8126 1.0279 20 6 1.7610 -12.2091 0.6093 21 1 0.6897 -12.3155 0.7798 22 8 2.0691 -12.4389 -0.7779 23 6 2.3415 -13.8495 -0.8691 24 6 2.8707 -14.2587 0.4855 25 6 3.5792 -15.3602 0.9192 26 6 3.9364 -15.4701 2.2508 27 6 3.5848 -14.4769 3.1460 28 6 2.8750 -13.3725 2.7112 29 6 2.5186 -13.2628 1.3830 30 6 0.8546 -7.3483 -0.0461 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3881 0.0042 33 1 2.6848 -3.7146 -0.8893 34 1 2.6846 -3.7145 0.8906 35 1 0.4367 -4.7621 0.8896 36 1 0.4375 -4.7618 -0.8904 37 1 3.5361 -5.9230 1.3527 38 1 1.9451 -5.9805 2.1804 39 1 3.6270 -8.2383 1.1072 40 1 2.4698 -8.2388 2.4673 41 1 3.2685 -10.6758 0.7444 42 1 2.1247 -10.7054 2.1080 43 1 3.0908 -14.0383 -1.6378 44 1 1.4253 -14.3951 -1.0948 45 1 3.8545 -16.1357 0.2199 46 1 4.4907 -16.3322 2.5914 47 1 3.8646 -14.5636 4.1855 48 1 2.6000 -12.5968 3.4106 49 1 -0.0413 -7.1339 0.5365 50 1 0.5906 -7.5829 -1.0772 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484548999.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:39 Heat of formation + Delta-G solvation = -38.571973 kcal Electronic energy + Delta-G solvation = -28826.976071 eV Core-core repulsion = 24819.194074 eV Total energy + Delta-G solvation = -4007.781997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.28992 -40.03475 -38.05463 -37.47914 -35.12772 -33.29331 -32.80177 -31.71365 -31.03112 -30.38898 -29.53916 -27.65391 -26.36179 -24.76924 -23.74170 -22.98919 -22.03479 -21.67418 -21.16106 -20.13428 -19.23589 -17.72133 -17.14072 -16.96555 -16.71867 -16.42231 -16.09695 -15.75879 -15.37528 -14.87231 -14.71662 -14.53264 -14.12222 -14.05812 -13.65036 -13.58402 -13.32341 -13.27439 -13.12216 -12.91272 -12.81071 -12.53870 -12.42019 -12.20337 -12.02136 -11.70971 -11.62668 -11.36773 -11.27564 -11.05354 -10.82829 -10.63503 -10.45933 -10.37283 -10.30029 -10.00673 -9.91908 -9.67420 -9.39163 -9.03525 -8.86084 -8.72683 -6.90241 -5.75270 -3.03882 0.73467 0.83221 2.53887 2.82349 3.19106 3.44012 3.47949 3.49367 3.51832 3.72485 4.10428 4.33471 4.37493 4.50661 4.52463 4.59026 4.60536 4.72032 4.81805 4.86458 4.93391 4.95238 5.01732 5.07966 5.11994 5.24207 5.32439 5.37527 5.42696 5.47984 5.52047 5.56402 5.64221 5.70619 5.83381 5.85537 5.86405 5.90944 5.92899 5.96074 6.13026 6.15705 6.27908 6.35762 6.37722 6.42340 6.45684 6.85803 6.90542 7.40963 7.71401 8.06751 8.43871 9.54802 10.13796 10.47941 11.47781 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.031135 B = 0.001545 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.092114 B =18123.528201 C =18575.992820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.115 4.115 12 C -0.094 4.094 13 H 0.084 0.916 14 C -0.127 4.127 15 C 0.099 3.901 16 N -0.620 5.620 17 C 0.529 3.471 18 O -0.531 6.531 19 C -0.133 4.133 20 C 0.139 3.861 21 H 0.094 0.906 22 O -0.340 6.340 23 C 0.087 3.913 24 C -0.128 4.128 25 C -0.095 4.095 26 C -0.115 4.115 27 C -0.116 4.116 28 C -0.091 4.091 29 C -0.126 4.126 30 C 0.110 3.890 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.017 0.983 34 H 0.019 0.981 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.129 0.871 48 H 0.126 0.874 49 H 0.070 0.930 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.185 -34.350 6.548 35.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.379 5.379 10 C 0.027 3.973 11 C -0.154 4.154 12 C -0.114 4.114 13 H 0.103 0.897 14 C -0.165 4.165 15 C -0.024 4.024 16 N -0.355 5.355 17 C 0.317 3.683 18 O -0.407 6.407 19 C -0.172 4.172 20 C 0.081 3.919 21 H 0.111 0.889 22 O -0.259 6.259 23 C 0.010 3.990 24 C -0.128 4.128 25 C -0.113 4.113 26 C -0.133 4.133 27 C -0.134 4.134 28 C -0.109 4.109 29 C -0.127 4.127 30 C -0.012 4.012 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.035 0.965 34 H 0.037 0.963 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.115 0.885 44 H 0.096 0.904 45 H 0.144 0.856 46 H 0.146 0.854 47 H 0.147 0.853 48 H 0.144 0.856 49 H 0.088 0.912 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.836 -34.343 5.945 35.723 hybrid contribution 0.264 0.808 0.274 0.893 sum 8.100 -33.534 6.219 35.055 Atomic orbital electron populations 1.69673 1.05119 1.25509 1.57929 1.24750 0.95533 0.97716 1.03118 0.86117 0.78761 0.84133 0.77186 1.20570 1.21863 1.21884 1.19287 0.91062 0.84220 1.42442 0.91146 1.42385 1.05916 1.00106 1.89488 1.20622 0.93481 0.85453 0.97720 1.21670 0.98650 0.92535 1.02515 1.22338 0.97202 0.94112 0.97740 0.89718 1.22740 1.02425 0.92937 0.98390 1.22115 0.91245 0.95199 0.93845 1.48561 1.35289 1.05153 1.46522 1.20076 0.84502 0.81676 0.82030 1.90738 1.32988 1.80071 1.36932 1.21789 1.01490 0.92261 1.01704 1.21043 0.98561 0.91255 0.81073 0.88884 1.89248 1.90138 1.22505 1.23961 1.21797 1.00181 0.82965 0.94032 1.21121 0.99031 0.95777 0.96891 1.20428 0.97918 0.96922 0.96071 1.21174 0.99935 0.99167 0.93000 1.21168 0.98419 0.93826 0.99974 1.20450 0.98183 0.98437 0.93850 1.21037 0.99589 0.97293 0.94760 1.22350 0.94841 0.84870 0.99180 0.93578 0.78315 0.96513 0.96314 0.91598 0.91505 0.89599 0.90059 0.91450 0.91487 0.87927 0.87611 0.88467 0.90381 0.85647 0.85416 0.85336 0.85573 0.91194 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.50 13.06 55.49 0.72 -27.77 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.77 5.60 -59.91 -0.34 -19.10 16 10 C 0.15 3.04 6.14 -4.04 -0.02 3.01 16 11 C -0.12 -1.78 4.83 -26.73 -0.13 -1.91 16 12 C -0.09 -1.16 3.03 -88.47 -0.27 -1.43 16 13 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 14 C -0.13 -1.30 5.75 -24.90 -0.14 -1.45 16 15 C 0.10 0.87 6.49 -3.06 -0.02 0.85 16 16 N -0.62 -7.19 3.33 -170.48 -0.57 -7.76 16 17 C 0.53 6.68 7.76 -10.99 -0.09 6.60 16 18 O -0.53 -8.82 15.82 -3.46 -0.05 -8.87 16 19 C -0.13 -1.18 4.55 -27.89 -0.13 -1.31 16 20 C 0.14 1.38 2.84 -27.70 -0.08 1.30 16 21 H 0.09 0.99 7.92 -51.93 -0.41 0.58 16 22 O -0.34 -4.04 10.89 -44.25 -0.48 -4.52 16 23 C 0.09 0.73 7.63 36.19 0.28 1.00 16 24 C -0.13 -1.04 6.32 -104.40 -0.66 -1.70 16 25 C -0.10 -0.61 10.04 -39.66 -0.40 -1.01 16 26 C -0.11 -0.65 10.05 -39.55 -0.40 -1.04 16 27 C -0.12 -0.66 10.05 -39.55 -0.40 -1.06 16 28 C -0.09 -0.60 9.78 -39.66 -0.39 -0.99 16 29 C -0.13 -1.06 5.72 -104.40 -0.60 -1.65 16 30 C 0.11 1.38 6.38 -2.50 -0.02 1.36 16 31 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.38 10.29 7.67 -40.82 -0.31 9.98 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.02 0.36 7.63 -51.93 -0.40 -0.03 16 35 H 0.07 1.02 8.04 -51.93 -0.42 0.61 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.86 7.96 -51.93 -0.41 0.45 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.11 0.66 7.82 -51.93 -0.41 0.25 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 46 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 47 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 48 H 0.13 0.59 7.86 -52.49 -0.41 0.18 16 49 H 0.07 0.88 8.04 -51.93 -0.42 0.46 16 50 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 LS Contribution 407.02 15.07 6.13 6.13 Total: -1.00 -35.28 407.02 -11.53 -46.81 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -8.22 Total: 4.47 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -3.70 Total: -6.87 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.18 Total: -54.64 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.54 Total: -13.39 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.28 -11.53 -46.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484548999.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.237 kcal (2) G-P(sol) polarization free energy of solvation -35.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds