Wall clock time and date at job start Wed Apr 1 2020 02:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48498 * 109.47298 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47403 * 300.00171 * 3 2 1 6 6 H 1.48509 * 109.46868 * 60.00224 * 3 2 1 7 7 C 1.38814 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99698 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99936 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47237 * 185.41861 * 10 9 7 12 12 H 1.09000 * 109.70362 * 47.98994 * 11 10 9 13 13 C 1.53195 * 109.58895 * 168.34266 * 11 10 9 14 14 C 1.53040 * 109.31496 * 174.42464 * 13 11 10 15 15 C 1.53041 * 109.53627 * 298.63104 * 14 13 11 16 16 C 1.52766 * 109.37958 * 61.24021 * 15 14 13 17 17 N 1.46924 * 109.58669 * 287.63107 * 11 10 9 18 18 C 1.34772 * 120.63141 * 6.57818 * 17 11 10 19 19 O 1.21288 * 120.00003 * 4.75330 * 18 17 11 20 20 C 1.50697 * 120.00398 * 184.74315 * 18 17 11 21 21 H 1.09005 * 109.19453 * 31.25537 * 20 18 17 22 22 O 1.43041 * 108.81664 * 151.30480 * 20 18 17 23 23 C 1.43205 * 112.83745 * 172.14093 * 22 20 18 24 24 C 1.52972 * 108.47742 * 289.03778 * 23 22 20 25 25 C 1.50749 * 109.75023 * 49.30209 * 24 23 22 26 26 C 1.38594 * 118.76425 * 162.92005 * 25 24 23 27 27 C 1.38067 * 120.27713 * 179.29109 * 26 25 24 28 28 C 1.38263 * 119.85720 * 0.24985 * 27 26 25 29 29 C 1.38058 * 119.89882 * 0.10814 * 28 27 26 30 30 C 1.37901 * 121.34918 * 342.95540 * 25 24 23 31 31 H 0.97003 * 119.99690 * 359.97438 * 1 2 3 32 32 H 0.96999 * 120.00577 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47447 * 65.41417 * 10 9 7 34 34 H 1.09000 * 109.47110 * 305.41637 * 10 9 7 35 35 H 1.09002 * 109.49744 * 294.37224 * 13 11 10 36 36 H 1.09005 * 109.49970 * 54.43541 * 13 11 10 37 37 H 1.08996 * 109.45927 * 58.65227 * 14 13 11 38 38 H 1.08996 * 109.46119 * 178.61626 * 14 13 11 39 39 H 1.08995 * 109.50342 * 181.31786 * 15 14 13 40 40 H 1.09003 * 109.50040 * 301.38796 * 15 14 13 41 41 H 1.09008 * 109.50695 * 185.70738 * 16 15 14 42 42 H 1.08992 * 109.43080 * 65.42753 * 16 15 14 43 43 H 1.08994 * 109.63794 * 169.33909 * 23 22 20 44 44 H 1.09000 * 109.80578 * 48.82922 * 23 22 20 45 45 H 1.08999 * 109.42604 * 289.22063 * 24 23 22 46 46 H 1.09001 * 109.42478 * 169.38449 * 24 23 22 47 47 H 1.08004 * 119.85899 * 359.56304 * 26 25 24 48 48 H 1.07991 * 120.07512 * 180.22482 * 27 26 25 49 49 H 1.07993 * 120.04895 * 180.09458 * 28 27 26 50 50 H 1.08000 * 119.84866 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0693 -4.8164 -0.1357 12 1 0.3731 -4.6122 -0.9491 13 6 1.8339 -6.1116 -0.4272 14 6 0.8556 -7.2885 -0.4244 15 6 0.2066 -7.4111 0.9562 16 6 -0.5721 -6.1337 1.2656 17 7 0.3251 -4.9793 1.1206 18 6 0.4669 -4.0897 2.1230 19 8 1.1468 -3.0983 1.9623 20 6 -0.2194 -4.3267 3.4436 21 1 -0.2921 -5.3996 3.6222 22 8 0.5492 -3.7097 4.4802 23 6 -0.1144 -3.7267 5.7492 24 6 -1.2888 -2.7480 5.6952 25 6 -2.1078 -3.0028 4.4555 26 6 -3.3926 -2.4878 4.3874 27 6 -4.1648 -2.6898 3.2609 28 6 -3.6559 -3.4135 2.1983 29 6 -2.3788 -3.9332 2.2683 30 6 -1.6035 -3.7333 3.4002 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3881 0.0005 33 1 2.6100 -3.7577 0.9350 34 1 2.7554 -3.6737 -0.8370 35 1 2.3130 -6.0393 -1.4036 36 1 2.5927 -6.2667 0.3398 37 1 0.0833 -7.1206 -1.1750 38 1 1.3930 -8.2080 -0.6558 39 1 -0.4725 -8.2636 0.9646 40 1 0.9802 -7.5548 1.7105 41 1 -0.9505 -6.1764 2.2870 42 1 -1.4049 -6.0391 0.5689 43 1 0.5815 -3.4211 6.5305 44 1 -0.4835 -4.7304 5.9595 45 1 -0.9089 -1.7265 5.6750 46 1 -1.9146 -2.8837 6.5773 47 1 -3.7899 -1.9222 5.2174 48 1 -5.1642 -2.2839 3.2098 49 1 -4.2567 -3.5721 1.3150 50 1 -1.9820 -4.4979 1.4377 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484618358.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:47 Heat of formation + Delta-G solvation = 10.142685 kcal Electronic energy + Delta-G solvation = -32766.914003 eV Core-core repulsion = 28761.244433 eV Total energy + Delta-G solvation = -4005.669571 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.84040 -39.39123 -37.50622 -36.62530 -34.57183 -33.13402 -32.51712 -31.97086 -31.16509 -29.75846 -29.36241 -26.61053 -25.57079 -24.30202 -23.78434 -22.94020 -22.32501 -21.17083 -20.58173 -19.95650 -18.67490 -17.46961 -16.85980 -16.45947 -16.32692 -15.48320 -15.34687 -15.05259 -14.69512 -14.54900 -14.41554 -14.24719 -13.74544 -13.58563 -13.55973 -13.36433 -13.09534 -12.85681 -12.79956 -12.41700 -12.23325 -12.15181 -12.03388 -11.79350 -11.66171 -11.57865 -11.06172 -10.96045 -10.79998 -10.67194 -10.64296 -10.60080 -10.51344 -10.25009 -9.77515 -9.53079 -9.41895 -8.78224 -8.59874 -8.52238 -8.15147 -7.97766 -6.40260 -5.44775 -2.64130 1.45345 1.55022 3.08228 3.33014 3.60904 3.65697 3.67926 3.90257 4.14531 4.66191 4.68287 4.78701 4.81093 4.85965 4.88967 4.91959 5.00354 5.14776 5.15729 5.21640 5.23163 5.30308 5.41023 5.46069 5.50605 5.57398 5.64074 5.76582 5.79169 5.82478 5.83995 5.90153 5.94841 5.98024 6.02732 6.09151 6.12556 6.17751 6.21572 6.38422 6.57091 6.60132 6.66914 6.68080 6.72387 6.95131 7.13084 7.16663 7.31979 7.92946 7.96733 8.72527 8.99159 9.84477 10.45062 10.79500 11.79005 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007590 B = 0.005967 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3688.080991 B = 4691.095283 C = 6729.857287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.021 4.021 3 Si 0.899 3.101 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.206 4.206 8 H 0.064 0.936 9 N -0.693 5.693 10 C 0.161 3.839 11 C 0.144 3.856 12 H 0.070 0.930 13 C -0.127 4.127 14 C -0.117 4.117 15 C -0.135 4.135 16 C 0.104 3.896 17 N -0.615 5.615 18 C 0.481 3.519 19 O -0.408 6.408 20 C 0.117 3.883 21 H 0.081 0.919 22 O -0.344 6.344 23 C 0.059 3.941 24 C -0.116 4.116 25 C -0.066 4.066 26 C -0.121 4.121 27 C -0.114 4.114 28 C -0.117 4.117 29 C -0.106 4.106 30 C -0.103 4.103 31 H 0.247 0.753 32 H 0.380 0.620 33 H 0.034 0.966 34 H 0.018 0.982 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.101 0.899 44 H 0.053 0.947 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.230 -17.979 8.347 21.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.215 4.215 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.224 1.224 6 H -0.224 1.224 7 C -0.338 4.338 8 H 0.082 0.918 9 N -0.336 5.336 10 C 0.033 3.967 11 C 0.041 3.959 12 H 0.088 0.912 13 C -0.166 4.166 14 C -0.155 4.155 15 C -0.173 4.173 16 C -0.020 4.020 17 N -0.355 5.355 18 C 0.263 3.737 19 O -0.273 6.273 20 C 0.056 3.944 21 H 0.098 0.902 22 O -0.261 6.261 23 C -0.018 4.018 24 C -0.153 4.153 25 C -0.066 4.066 26 C -0.139 4.139 27 C -0.132 4.132 28 C -0.135 4.135 29 C -0.124 4.124 30 C -0.104 4.104 31 H 0.057 0.943 32 H 0.214 0.786 33 H 0.051 0.949 34 H 0.035 0.965 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.119 0.881 44 H 0.071 0.929 45 H 0.107 0.893 46 H 0.101 0.899 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.464 -17.147 8.253 20.098 hybrid contribution -0.373 0.925 0.136 1.007 sum -6.838 -16.222 8.389 19.501 Atomic orbital electron populations 1.69673 1.04879 1.24523 1.59496 1.24584 0.95388 0.97061 1.04513 0.86200 0.78748 0.85073 0.76820 1.20877 1.22429 1.22374 1.19177 0.90661 0.84353 1.39604 0.91801 1.42213 1.05299 0.99448 1.86666 1.20843 0.92863 0.85143 0.97865 1.21485 0.93906 0.95417 0.85047 0.91232 1.21920 0.98172 0.94258 1.02284 1.21490 0.98871 0.98296 0.96800 1.21862 1.00114 0.97193 0.98150 1.21701 0.92684 0.85810 1.01781 1.47870 1.46207 1.25707 1.15734 1.19798 0.85341 0.84135 0.84407 1.91275 1.34315 1.23861 1.77809 1.20906 0.88160 0.95946 0.89435 0.90189 1.88311 1.41148 1.80140 1.16543 1.22632 0.94721 0.98078 0.86367 1.21140 0.96797 1.01896 0.95465 1.19400 0.94430 0.97271 0.95483 1.20966 0.93836 1.00438 0.98678 1.21070 0.99789 0.98626 0.93705 1.21035 0.95790 0.98281 0.98425 1.21325 0.94237 0.99901 0.96960 1.19767 0.95052 1.00455 0.95112 0.94293 0.78614 0.94851 0.96453 0.90817 0.91533 0.91829 0.91996 0.91128 0.91548 0.90214 0.91539 0.88119 0.92882 0.89314 0.89933 0.86200 0.86164 0.86002 0.85154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.56 13.06 55.49 0.72 -29.83 16 2 C -0.02 -0.66 5.50 -17.43 -0.10 -0.75 16 3 Si 0.90 24.53 29.55 -169.99 -5.02 19.51 16 4 H -0.28 -7.50 7.11 56.52 0.40 -7.10 16 5 H -0.30 -8.02 7.11 56.52 0.40 -7.61 16 6 H -0.30 -8.19 7.11 56.52 0.40 -7.79 16 7 C -0.21 -6.31 9.72 -15.06 -0.15 -6.45 16 8 H 0.06 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.69 -19.09 3.18 -59.91 -0.19 -19.28 16 10 C 0.16 3.56 4.89 -4.04 -0.02 3.54 16 11 C 0.14 2.45 2.91 -67.60 -0.20 2.25 16 12 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 13 C -0.13 -1.63 5.34 -26.61 -0.14 -1.77 16 14 C -0.12 -1.16 5.89 -26.69 -0.16 -1.32 16 15 C -0.13 -1.27 6.07 -26.83 -0.16 -1.43 16 16 C 0.10 1.19 4.35 -3.93 -0.02 1.17 16 17 N -0.61 -9.88 2.64 -165.48 -0.44 -10.32 16 18 C 0.48 9.52 5.76 -10.99 -0.06 9.46 16 19 O -0.41 -10.49 10.36 -12.93 -0.13 -10.62 16 20 C 0.12 1.96 2.48 -29.06 -0.07 1.89 16 21 H 0.08 1.08 6.22 -51.93 -0.32 0.76 16 22 O -0.34 -6.22 10.11 -53.71 -0.54 -6.76 16 23 C 0.06 0.76 6.84 37.14 0.25 1.01 16 24 C -0.12 -1.51 6.01 -27.87 -0.17 -1.68 16 25 C -0.07 -1.02 5.78 -104.59 -0.60 -1.62 16 26 C -0.12 -1.70 9.67 -39.51 -0.38 -2.08 16 27 C -0.11 -1.56 10.05 -39.63 -0.40 -1.96 16 28 C -0.12 -1.71 10.05 -39.64 -0.40 -2.11 16 29 C -0.11 -1.69 8.52 -39.50 -0.34 -2.03 16 30 C -0.10 -1.72 5.43 -104.62 -0.57 -2.29 16 31 H 0.25 7.86 8.31 -40.82 -0.34 7.52 16 32 H 0.38 11.16 7.15 -40.82 -0.29 10.87 16 33 H 0.03 0.82 6.41 -51.93 -0.33 0.48 16 34 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.84 4.97 -51.92 -0.26 0.58 16 42 H 0.07 0.71 7.30 -51.93 -0.38 0.33 16 43 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.56 8.07 -51.93 -0.42 0.14 16 45 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 48 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 49 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 50 H 0.13 1.97 4.04 -52.49 -0.21 1.76 16 LS Contribution 379.44 15.07 5.72 5.72 Total: -1.00 -37.94 379.44 -11.24 -49.18 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -7.68 Total: 8.60 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -3.67 Total: -6.18 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.10 Total: -59.44 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.68 Total: -17.38 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.02 Total: 19.51 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.94 -11.24 -49.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484618358.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.318 kcal (2) G-P(sol) polarization free energy of solvation -37.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds